Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001003-TA|BGIBMGA001003-PA|IPR001128|Cytochrome P450,
IPR002401|E-class P450, group I, IPR000923|Blue (type 1) copper domain
         (420 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    81   3e-16
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    74   4e-14
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    31   0.30 
SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit C...    29   1.6  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    28   2.1  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    28   2.8  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    28   2.8  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    28   2.8  
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom...    27   3.7  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    27   3.7  
SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyc...    27   4.9  

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 81.0 bits (191), Expect = 3e-16
 Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 2/162 (1%)

Query: 205 SDHEIKEEVDTIMFEGHDTTAAGSSFVLCLLGIHQEIQSKVYDELFEIF-GDSDRLVTFA 263
           SD EI     + +F   D T++  +++  LL  H ++  KV +E   I  GD D  ++  
Sbjct: 305 SDEEISLTFLSFLFASQDATSSAMTWLFQLLADHPDVLQKVREEQLRIRKGDIDVPLSLD 364

Query: 264 DTLQMKYLERVILESLRLYPPVPAIARKLTRDVQIVTNNYIIPAGSTVVIGTFKIHRDPK 323
              +M Y   V+ E LRL PPV  +  ++ +   I T +Y +P  + V+   +    D K
Sbjct: 365 LMEKMTYTRAVVKECLRLRPPVLMVPYRVKKAFPI-TPDYTVPKDAMVIPTLYGALHDSK 423

Query: 324 YHKNPNVFNPDNFLPENTQNRHYYSYIPFSAGPRSCVGRKYA 365
            +  P  FNPD + P     +   +++ F  GP  C+G++YA
Sbjct: 424 VYPEPETFNPDRWAPNGLAEQSPKNWMVFGNGPHVCLGQRYA 465


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 73.7 bits (173), Expect = 4e-14
 Identities = 53/195 (27%), Positives = 90/195 (46%), Gaps = 16/195 (8%)

Query: 204 ISDHEIKEEVDTIMFEGHDTTAAGSSFVLCLLGIHQEIQSKVYDELFEIFGDSDRLVTFA 263
           + +HEI   +  ++  G  T+AA   +VL LLG   EI   +++E   + G++  L  F 
Sbjct: 273 LKEHEIAGMMIALLMAGQHTSAATIVWVLALLGSKPEIIEMLWEEQKRVVGENLEL-KFD 331

Query: 264 DTLQMKYLERVILESLRLYPPVPAIARKLTRDVQIVTNNYIIPAGSTVVIGTFKIHRDPK 323
               M  L  VI E+LRL+PP+ +  RK+ RD+ +  +  +IPA + ++        + +
Sbjct: 332 QYKDMPLLNYVIQETLRLHPPIHSHMRKVKRDLPVPGSKIVIPANNYLLAAPGLTATEEE 391

Query: 324 YHKNPNVFNPDNF-----LPENTQNRHY-YS---------YIPFSAGPRSCVGRKYAXXX 368
           Y  +   F+P  +       EN +   Y Y          Y+PF AG   C+G ++A   
Sbjct: 392 YFTHATDFDPKRWNDRVNEDENAEQIDYGYGLVTKGAASPYLPFGAGRHRCIGEQFAYMH 451

Query: 369 XXXXXSTILRNYKTT 383
                S  + +Y  T
Sbjct: 452 LSTIISKFVHDYTWT 466


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 31.1 bits (67), Expect = 0.30
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 163  DTVFKGYRDDLDFNDEQDVGEKKRLAFLDLMIESAQNHTCNISDHEIKEEVDTI 216
            D    GY D+LD+N E +VGE     F    +E+A   T +  DH   EE D +
Sbjct: 1949 DNASSGYEDELDYN-EDEVGENDSTTF--EAMENAFTETSDNDDH--LEEADHV 1997


>SPAPB1A10.04c |cwp1||geranylgeranyltransferase I alpha subunit
           Cwp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 294

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 11/36 (30%), Positives = 21/36 (58%)

Query: 83  QRHYKVWLHFDAIFKLTSLFKKQRELLKTIHGLTNK 118
           Q++Y+VW H   I  LT  ++++ E  K +  + +K
Sbjct: 108 QKNYQVWHHRQKILSLTKNYERELEFTKKMFEIDSK 143


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 57  GITKTTQDAASFDYAMAVMKMCNIIHQ 83
           G  + T D   F + +AV+K C+I+H+
Sbjct: 149 GSGRNTTDIVLFPFVLAVIKCCDIVHR 175


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 13/56 (23%), Positives = 25/56 (44%)

Query: 120 IKKKKFMYLQNKEKGIIPPTIEELTKIKDTNDSIMEDSAKTLSDTVFKGYRDDLDF 175
           +KK     ++   +   PP+    + + D NDS++   +     T F G+ D L +
Sbjct: 172 LKKYSSTKVERVSEAAPPPSSLNSSTVLDENDSLISQGSSVDDQTDFLGFDDSLSY 227


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 177 DEQDVGEKKRLAFLDLMIESAQNHTCNISDHEIK 210
           D+++ G KKR+  L  + E+ + H   +SD +I+
Sbjct: 355 DKKNQGSKKRIVILKAIGETYEKHATVVSDDDIR 388


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1274

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 121  KKKKFMYLQNKEKGIIPPTIEELTKIKDTNDSI-MEDSAKTLSDT 164
            K+K   YLQ+  K  +   + +L  +K+TN+ +   DS  +L DT
Sbjct: 1081 KEKHLKYLQSSYKNSLEVQLAKLDIVKETNERLSTADSILSLIDT 1125


>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 15/50 (30%), Positives = 24/50 (48%)

Query: 140 IEELTKIKDTNDSIMEDSAKTLSDTVFKGYRDDLDFNDEQDVGEKKRLAF 189
           +E L K+ +  ++I+ED  + +   V       L   DE D  EK+R  F
Sbjct: 59  LESLRKLTNAQNTIIEDKKRKVEKPVSGNQFSLLSEEDEVDKKEKRRRRF 108


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 15/47 (31%), Positives = 25/47 (53%)

Query: 131 KEKGIIPPTIEELTKIKDTNDSIMEDSAKTLSDTVFKGYRDDLDFND 177
           K  G     I++L++  + ND I ++S K+  D V K   ++ DF D
Sbjct: 642 KMTGYDDEIIQDLSRYIEGNDEIEKESYKSGLDIVMKNTDENTDFVD 688


>SPBC646.16 |||20S proteasome component alpha 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 244

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 21  NSKSVVKKL--RSEVGKTFDVHDYMSCVTVDILLETAMGITKTTQDAASFDYAMAVMKMC 78
           + K V  KL   S V   F +   + CV    + +    +++   +AA F+Y       C
Sbjct: 50  SQKKVPDKLIDASTVKHVFPITKGIGCVMTGSIADARAQVSRARSEAAEFEYKNGYPMPC 109

Query: 79  NIIHQR 84
           +++ +R
Sbjct: 110 DVLAKR 115


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.321    0.136    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,943,641
Number of Sequences: 5004
Number of extensions: 83309
Number of successful extensions: 254
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 240
Number of HSP's gapped (non-prelim): 12
length of query: 420
length of database: 2,362,478
effective HSP length: 75
effective length of query: 345
effective length of database: 1,987,178
effective search space: 685576410
effective search space used: 685576410
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)