Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001002-TA|BGIBMGA001002-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH, IPR011598|Helix-loop-helix
DNA-binding
(404 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g47180.1 68416.m05123 zinc finger (C3HC4-type RING finger) fa... 39 0.005
At2g27060.1 68415.m03251 leucine-rich repeat transmembrane prote... 39 0.005
At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a '... 32 0.78
At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a '... 32 0.78
At4g28410.1 68417.m04067 aminotransferase-related similar to nic... 31 1.0
At3g61670.1 68416.m06911 expressed protein weak similarity to ex... 31 1.4
At1g12920.1 68414.m01500 eukaryotic release factor 1 family prot... 31 1.4
At2g27150.1 68415.m03263 aldehyde oxidase 3 (AAO3) identical to ... 31 1.8
At2g25670.2 68415.m03077 expressed protein 31 1.8
At2g25670.1 68415.m03076 expressed protein 31 1.8
At5g13860.1 68418.m01620 tumour susceptibility gene 101 (TSG101)... 30 3.2
At5g08020.1 68418.m00933 replication protein, putative similar t... 30 3.2
At4g13810.1 68417.m02140 disease resistance family protein / LRR... 29 5.5
At3g55830.1 68416.m06203 glycosyltransferase family protein 47 s... 29 5.5
At2g46510.1 68415.m05796 basic helix-loop-helix (bHLH) family pr... 29 5.5
At2g24310.1 68415.m02906 expressed protein 29 5.5
At4g18450.1 68417.m02737 ethylene-responsive factor, putative si... 29 7.3
At4g18700.1 68417.m02765 CBL-interacting protein kinase 12 (CIPK... 28 9.7
At4g13920.1 68417.m02154 disease resistance family protein / LRR... 28 9.7
At4g03916.1 68417.m00552 hypothetical protein low similarity to ... 28 9.7
>At3g47180.1 68416.m05123 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 210
Score = 39.1 bits (87), Expect = 0.005
Identities = 34/116 (29%), Positives = 57/116 (49%), Gaps = 11/116 (9%)
Query: 248 DEEEGQPLTPSSDLLVQDEVNSHILDAHFQFPNSAEHFSVIPEQNYLSETEVPVSESDFE 307
+EE QP DL + ++ NS + A Q NS HF+ + S + + + ESD E
Sbjct: 5 EEEPKQPPNKLPDLALFEQANSEVALAASQ-ANS--HFAHAMHDS--SPSMISMIESDEE 59
Query: 308 IKYADSLNQHIQQSFNENTDIPFALNPDLILPENQFKFKESDNSSFTENEDFCEVE 363
+ + +N++ + F+ N F ++ D I N+F + NS+ E +DF E E
Sbjct: 60 SEDEEEINENYYEYFDSNG---FGVDEDEI---NEFLEDQESNSNLEEEDDFLEEE 109
>At2g27060.1 68415.m03251 leucine-rich repeat transmembrane protein
kinase, putative
Length = 1007
Score = 39.1 bits (87), Expect = 0.005
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 45 VLRKKQRIQPADTVSVPALMRTIEPSSSSVLAKKARYRENTSSDETVRTPT 95
+LRK+ + +D +++ EPSSS+V+A K +EN SS T TP+
Sbjct: 576 MLRKQHDEEKSDVTGEKSIVPKTEPSSSNVIAAKNSVQENESSSSTTSTPS 626
>At1g08060.2 68414.m00881 MOM1 identical to MOM1 (mutation in a
'Morpheus molecule') [Arabidopsis thaliana]
gi|8132770|gb|AAF73381.1|
Length = 2001
Score = 31.9 bits (69), Expect = 0.78
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 328 IPFALNPDLILPENQFKFKESDNSS--FTENEDFCEVELKKELPDIQVTPEDREQFEETL 385
IPF + D L E + +ES+NS F E + + EL++++ ++Q E R +F E
Sbjct: 1727 IPFPVFNDPFLHELEKLRRESENSKKTFEEKKSILKAELERKMAEVQA--EFRRKFHEVE 1784
Query: 386 KWWQEKTRQTRPTKTLN 402
+ TR T+ K N
Sbjct: 1785 A--EHNTRTTKIEKDKN 1799
>At1g08060.1 68414.m00880 MOM1 identical to MOM1 (mutation in a
'Morpheus molecule') [Arabidopsis thaliana]
gi|8132770|gb|AAF73381.1|
Length = 2001
Score = 31.9 bits (69), Expect = 0.78
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 328 IPFALNPDLILPENQFKFKESDNSS--FTENEDFCEVELKKELPDIQVTPEDREQFEETL 385
IPF + D L E + +ES+NS F E + + EL++++ ++Q E R +F E
Sbjct: 1727 IPFPVFNDPFLHELEKLRRESENSKKTFEEKKSILKAELERKMAEVQA--EFRRKFHEVE 1784
Query: 386 KWWQEKTRQTRPTKTLN 402
+ TR T+ K N
Sbjct: 1785 A--EHNTRTTKIEKDKN 1799
>At4g28410.1 68417.m04067 aminotransferase-related similar to
nicotianamine aminotransferase [Hordeum vulgare subsp.
vulgare] GI:6469090
Length = 447
Score = 31.5 bits (68), Expect = 1.0
Identities = 19/61 (31%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 309 KYADSLNQHIQQSFNENTDIPFALNPDLILPENQFKFKESDNSSFTENEDFCEVELKKEL 368
+ +S+ +H+ S + +T + FAL P+ IL + + +F E +NS ++N DF + K++
Sbjct: 303 RVVESIKEHLDISPDPSTILQFAL-PN-ILEKTKKEFFEKNNSILSQNVDFA-FDALKDI 359
Query: 369 P 369
P
Sbjct: 360 P 360
>At3g61670.1 68416.m06911 expressed protein weak similarity to
extra-large G-protein [Arabidopsis thaliana] GI:3201682
Length = 790
Score = 31.1 bits (67), Expect = 1.4
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 45 VLRKKQRIQPADTVSVPALMRTIEPSSSSVLAKKARYRENTSSDETV 91
VLR K + + AD+VSV ++ T +P S+S K TSSD V
Sbjct: 36 VLRAKTKEREADSVSVKSVEDTAKPVSASSPEKAILDSSETSSDSDV 82
>At1g12920.1 68414.m01500 eukaryotic release factor 1 family protein
/ eRF1 family protein contains Pfam profiles: PF03463
eRF1 domain 1, PF03464 eRF1 domain 2, PF03465 eRF1
domain 3
Length = 434
Score = 31.1 bits (67), Expect = 1.4
Identities = 14/51 (27%), Positives = 34/51 (66%)
Query: 344 KFKESDNSSFTENEDFCEVELKKELPDIQVTPEDREQFEETLKWWQEKTRQ 394
K +ESD S+F ++E E+E+++++P ++ + ++F TL++ K+++
Sbjct: 347 KDQESDTSNFHDSETNAELEVQEKMPLLEWFANEYKRFGCTLEFVTNKSQE 397
>At2g27150.1 68415.m03263 aldehyde oxidase 3 (AAO3) identical to
GP:3172044:gnl:PID:d1029570:AB010080
Length = 1332
Score = 30.7 bits (66), Expect = 1.8
Identities = 17/52 (32%), Positives = 24/52 (46%)
Query: 293 YLSETEVPVSESDFEIKYADSLNQHIQQSFNENTDIPFALNPDLILPENQFK 344
YL E P+ ES I DS N+H + +PF + +L N+FK
Sbjct: 512 YLFEFFYPLIESGHRICSLDSGNKHNNSHVDTVKSLPFLSSSQQVLESNEFK 563
>At2g25670.2 68415.m03077 expressed protein
Length = 318
Score = 30.7 bits (66), Expect = 1.8
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 292 NYLSETEVPVSESDFEIKYADSLNQHIQQSFNENTDIPFALNPDLI-LPENQFKFKESDN 350
++ +V V ES+ E D + +++ + T++ P++ PE KE++
Sbjct: 97 SHTDSKDVHVEESESEEDILDEGDDDVEEEQEQETEVQVHPEPEVKKAPEVPAPPKEAER 156
Query: 351 SSFTENEDFCEV-ELKKELPDIQVTPEDREQFEETLKWWQEK 391
+ E+ EL+ L D V P++ EE+ + QEK
Sbjct: 157 QLSKKERKKKELAELEALLADFGVAPKENNGLEESQEAGQEK 198
>At2g25670.1 68415.m03076 expressed protein
Length = 318
Score = 30.7 bits (66), Expect = 1.8
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 2/102 (1%)
Query: 292 NYLSETEVPVSESDFEIKYADSLNQHIQQSFNENTDIPFALNPDLI-LPENQFKFKESDN 350
++ +V V ES+ E D + +++ + T++ P++ PE KE++
Sbjct: 97 SHTDSKDVHVEESESEEDILDEGDDDVEEEQEQETEVQVHPEPEVKKAPEVPAPPKEAER 156
Query: 351 SSFTENEDFCEV-ELKKELPDIQVTPEDREQFEETLKWWQEK 391
+ E+ EL+ L D V P++ EE+ + QEK
Sbjct: 157 QLSKKERKKKELAELEALLADFGVAPKENNGLEESQEAGQEK 198
>At5g13860.1 68418.m01620 tumour susceptibility gene 101 (TSG101)
family protein similar to SP|Q99816 Tumor susceptibility
gene 101 protein {Homo sapiens}; contains Pfam profile
PF05743: Tumour susceptibility gene 101 protein (TSG101)
Length = 368
Score = 29.9 bits (64), Expect = 3.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 38 NVRREIIVLRKKQRIQPADTVSVPALMRTIEPSSSSV 74
N R++I+ R + P+ VS+P L I PSS+ V
Sbjct: 106 NPTRDMIIKRPHSNVSPSGLVSLPYLQNWIYPSSNLV 142
>At5g08020.1 68418.m00933 replication protein, putative similar to
replication protein A1 [Oryza sativa] GI:2258469;
contains InterPro entry IPR004365: OB-fold nucleic acid
binding domain
Length = 604
Score = 29.9 bits (64), Expect = 3.2
Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 309 KYADSLNQHIQQSFNENTDIPFALNPDLILPENQFKFKESDN-SSFTENEDFCEV 362
K ++ + + NEN+++ A N ++ PE +F F D ++ +D +V
Sbjct: 241 KQFKTVQNDYEMTLNENSEVEEASNEEMFTPETKFNFVPIDELGTYVNQKDLIDV 295
>At4g13810.1 68417.m02140 disease resistance family protein / LRR
family protein contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611; similar to disease
resistance protein [Lycopersicon esculentum]
gi|3894383|gb|AAC78591
Length = 741
Score = 29.1 bits (62), Expect = 5.5
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 338 LPENQFKFKESDNSSFTENEDFCEVELKK-----ELPDIQVTPEDREQFEETLKW 387
+PE + + D+SSFTEN C L K E Q ED+E+ ++ W
Sbjct: 651 IPETT-QIQTQDSSSFTENPGLCGAPLLKKCGGEEEATKQEQDEDKEEEDQVFSW 704
>At3g55830.1 68416.m06203 glycosyltransferase family protein 47
similar to exostose-related protein 2, Homo sapiens,
PIR:JC5935 [SP|Q93063], EXTL2, Mus musculus
[GI:10443633]
Length = 334
Score = 29.1 bits (62), Expect = 5.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 303 ESDFEIKYADSLNQHIQQSFNENTDIPFALNPDLILP 339
E F+I DSLN ++ + TD F+++ D+I P
Sbjct: 136 ELRFDINKEDSLNNRFKEIKDLKTDAVFSIDDDIIFP 172
>At2g46510.1 68415.m05796 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain
Length = 566
Score = 29.1 bits (62), Expect = 5.5
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 141 PN-KKLSKVETLRMAVEYIRNLESLLNIGHADKENTSRSCMESFPSPASSSPRENSQ 196
PN K+ K L A+ YI+ L+ + I ++ T +S ES SP + Q
Sbjct: 419 PNISKMDKASLLGDAISYIKELQEKVKIMEDERVGTDKSLSESNTITVEESPEVDIQ 475
>At2g24310.1 68415.m02906 expressed protein
Length = 322
Score = 29.1 bits (62), Expect = 5.5
Identities = 26/104 (25%), Positives = 40/104 (38%), Gaps = 5/104 (4%)
Query: 51 RIQPADTVSVPALMR--TIEPSSSSVLAKKARYRENT--SSDETVRTPTPLXXXXXXXXX 106
++Q ++ P M T+ SS S+ A+ R E+ SS T +T TP+
Sbjct: 102 KLQGGSNLTTPFSMAETTLVSSSPSLPAENVRVSESNLKSSSSTAKT-TPVSASPSVNAR 160
Query: 107 XXXXXXXXDGFAALRRHIPEEVAAAFETTNSNRGPNKKLSKVET 150
P E FETT + P++K+ ET
Sbjct: 161 VSESNLNSSSSTTPVSVSPSEKVRVFETTPVSASPSEKVRVFET 204
>At4g18450.1 68417.m02737 ethylene-responsive factor, putative
similar to ethylene response factor 1 GB:AAD03544
GI:4128208 from [Arabidopsis thaliana]; EREBP-1
(Ethylene-inducible DNA binding protein that interact
with an ethylene-responsive element) - Nicotiana
tabacum, PATCHX:D1007899
Length = 303
Score = 28.7 bits (61), Expect = 7.3
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 244 PHLYDEEEG-QPLTPSSDLLVQDEVNSHILDAHFQFPNSAEH 284
P L D EG + + S D+ +D+ + ILDA FPN H
Sbjct: 45 PTLDDIPEGSREMLQSLDMSTEDQEWTEILDAIASFPNKTNH 86
>At4g18700.1 68417.m02765 CBL-interacting protein kinase 12 (CIPK12)
identical to CBL-interacting protein kinase 12
[Arabidopsis thaliana] gi|13249123|gb|AAK16687; contains
Pfam profiles PF00069: Protein kinase domain and
PF03822: NAF domain; identical to cDNA CBL-interacting
protein kinase 12 (CIPK12) GI:13249122
Length = 489
Score = 28.3 bits (60), Expect = 9.7
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 330 FALNPDLILPENQFKFKESDNSSFTENEDFCEVELKKELPDI 371
F L P L++ E K K D TE EDFC ELK +L ++
Sbjct: 419 FELTPSLVVVE--VKKKGGDK---TEYEDFCNNELKPKLQNL 455
>At4g13920.1 68417.m02154 disease resistance family protein / LRR
family protein contains leucine rich-repeat domains
Pfam:PF00560, INTERPRO:IPR001611; similar to Cf-2.2
[Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
Length = 891
Score = 28.3 bits (60), Expect = 9.7
Identities = 11/44 (25%), Positives = 24/44 (54%)
Query: 344 KFKESDNSSFTENEDFCEVELKKELPDIQVTPEDREQFEETLKW 387
+ + ++SSF EN C L+K+ + +++E+ ++ L W
Sbjct: 806 QIQSQNSSSFAENPGLCGAPLQKKCGGEEEEDKEKEEKDKGLSW 849
>At4g03916.1 68417.m00552 hypothetical protein low similarity to
SP|P07271 DNA repair and recombination protein PIF1,
mitochondrial precursor {Saccharomyces cerevisiae}
Length = 251
Score = 28.3 bits (60), Expect = 9.7
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 275 HFQFPNSAEHFSVIPEQNYLSETEVPVSESDFEIKYADSLNQHIQQSFNENTDIPFALNP 334
HF PN E IPE+ ++E E P+ EI +L EN D+ F
Sbjct: 7 HFAKPNDGEVLIGIPEEFLITEGEDPIKAISLEICGDPTL-------LLENKDLKFIQER 59
Query: 335 DLILPENQ 342
++ P N+
Sbjct: 60 AILSPTNE 67
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.311 0.127 0.351
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,125,386
Number of Sequences: 28952
Number of extensions: 386773
Number of successful extensions: 1016
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1008
Number of HSP's gapped (non-prelim): 20
length of query: 404
length of database: 12,070,560
effective HSP length: 83
effective length of query: 321
effective length of database: 9,667,544
effective search space: 3103281624
effective search space used: 3103281624
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 60 (28.3 bits)
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