GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001002-TA|BGIBMGA001002-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH, IPR011598|Helix-loop-helix
DNA-binding
         (404 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           79   4e-17
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           66   4e-13
AJ536347-1|CAD60438.1|   40|Tribolium castaneum putative Ash pro...    39   7e-05
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    28   0.10 
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        25   0.73 
U61151-1|AAB41306.1|   45|Tribolium castaneum TATH1 protein.           25   0.97 
U61152-1|AAB41307.1|   45|Tribolium castaneum TATH2 protein.           22   6.8  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    22   6.8  

>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 79.4 bits (187), Expect = 4e-17
 Identities = 45/75 (60%), Positives = 56/75 (74%), Gaps = 6/75 (8%)

Query: 115 DGFAALRRHIPEEVAAAFETTNSNRGPNKKLSKVETLRMAVEYIRNLESLLNIGHADKEN 174
           +GFA LR+HIP  +AAAFE+  ++RG NKKLSKVETLRMAVEYIR+LE LL    A  E+
Sbjct: 70  NGFANLRQHIPNFIAAAFES--NSRGGNKKLSKVETLRMAVEYIRSLEDLL----ALDES 123

Query: 175 TSRSCMESFPSPASS 189
           T  S   S PSP+++
Sbjct: 124 TVSSSTSSIPSPSTT 138


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 66.1 bits (154), Expect = 4e-13
 Identities = 34/64 (53%), Positives = 45/64 (70%), Gaps = 2/64 (3%)

Query: 115 DGFAALRRHIPEEVAAAF--ETTNSNRGPNKKLSKVETLRMAVEYIRNLESLLNIGHADK 172
           +GFA LR+HIP  VAAAF  +  ++ RG +KKLSKVETLR+AVEYIR+L+ ++     D 
Sbjct: 103 NGFATLRQHIPASVAAAFAPQGPSTGRGASKKLSKVETLRLAVEYIRSLKQMIEDHENDT 162

Query: 173 ENTS 176
              S
Sbjct: 163 TGNS 166


>AJ536347-1|CAD60438.1|   40|Tribolium castaneum putative Ash
           protein protein.
          Length = 40

 Score = 38.7 bits (86), Expect = 7e-05
 Identities = 19/31 (61%), Positives = 25/31 (80%), Gaps = 2/31 (6%)

Query: 115 DGFAALRRHIPEEVAAAFETTNSNRGPNKKL 145
           +GFA LR+HIP  +AAAFE  +++RG NKKL
Sbjct: 10  NGFANLRQHIPNFIAAAFE--SNSRGGNKKL 38


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 28.3 bits (60), Expect = 0.10
 Identities = 12/26 (46%), Positives = 19/26 (73%)

Query: 141 PNKKLSKVETLRMAVEYIRNLESLLN 166
           P+ KLSK++TL++A  YI  L  +L+
Sbjct: 127 PSDKLSKIQTLKLAARYIDFLYHVLS 152


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 25.4 bits (53), Expect = 0.73
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 7/80 (8%)

Query: 309 KYAD--SLNQHIQQSFNENTDIPFALNPDLILPENQFKFKESDNSSFTENEDFCEVELKK 366
           KY D   L +H+++S  + T  PF LN    +P    K +  D +         E  +  
Sbjct: 357 KYHDPSQLLRHVEESDKQRTHQPFLLN----IPSEGIKVEPRDKAPSPYGGQMFEAPIPN 412

Query: 367 ELPD-IQVTPEDREQFEETL 385
             P  +  TP +   F+  L
Sbjct: 413 VSPHYVTPTPPEAPLFQNVL 432


>U61151-1|AAB41306.1|   45|Tribolium castaneum TATH1 protein.
          Length = 45

 Score = 25.0 bits (52), Expect = 0.97
 Identities = 11/18 (61%), Positives = 14/18 (77%)

Query: 140 GPNKKLSKVETLRMAVEY 157
           G ++KLSK ETL+MA  Y
Sbjct: 28  GNDRKLSKFETLQMAQTY 45


>U61152-1|AAB41307.1|   45|Tribolium castaneum TATH2 protein.
          Length = 45

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 10/14 (71%), Positives = 11/14 (78%)

Query: 144 KLSKVETLRMAVEY 157
           KLSK ETL+MA  Y
Sbjct: 32  KLSKFETLQMAQTY 45


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 10/29 (34%), Positives = 15/29 (51%)

Query: 69  PSSSSVLAKKARYRENTSSDETVRTPTPL 97
           P +S++LA   RY     +   +  PTPL
Sbjct: 214 PGTSAMLAAYQRYNPYLQAASMLPKPTPL 242


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.311    0.127    0.351 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,291
Number of Sequences: 317
Number of extensions: 3819
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 9
length of query: 404
length of database: 114,650
effective HSP length: 58
effective length of query: 346
effective length of database: 96,264
effective search space: 33307344
effective search space used: 33307344
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 44 (21.8 bits)