Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001002-TA|BGIBMGA001002-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH, IPR011598|Helix-loop-helix
DNA-binding
(404 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 31 0.29
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 29 0.89
SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr ... 29 1.2
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa... 28 2.0
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual 28 2.7
SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces pomb... 27 3.6
SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre... 27 3.6
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 27 3.6
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 27 6.2
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 27 6.2
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 27 6.2
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 6.2
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po... 26 8.3
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc... 26 8.3
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 31.1 bits (67), Expect = 0.29
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 338 LPENQFKFKESDNSSFTENEDFCEVELKKELPDIQVTPEDREQFEETLKWWQEKT 392
LP+N S+ TE ++ E+E +K + T E+ +Q EE KWW+E++
Sbjct: 1228 LPKNSQPLSISE--IMTEQKE--EIESQKRRSSFRKTIEEIQQEEEFQKWWEEES 1278
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 29.5 bits (63), Expect = 0.89
Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 5/133 (3%)
Query: 258 SSDLLVQDEVNSHILDAHFQFPNSAEHFSVIPEQNYLSETEVPVS-ESDFEIKYADSLNQ 316
S D+ + DE+ I + + Q P E +PE L E E VS +SD E ++ ++
Sbjct: 4056 SDDVGIDDEIQPDIQENNSQPPPENEDHLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADE 4115
Query: 317 HIQQSFNENTDIPFALNPDLILPENQF--KFKESDNSSFTE-NEDFCEVELKKELPDIQV 373
+ +++ E D P D + N ++ D S E +E E ++ + + +
Sbjct: 4116 NKEEADAEK-DEPMQDFEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEE 4174
Query: 374 TPEDREQFEETLK 386
+ ED + +E L+
Sbjct: 4175 STEDGVKSDEELE 4187
Score = 26.2 bits (55), Expect = 8.3
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 147 KVETLRMAVEYIRNLESLLNIGHAD--KENTSRSCMESFPSPASSS 190
K LR ++ +NLE +NIG K +T RSC + + SSS
Sbjct: 408 KALQLRYSIPVFQNLEHNINIGRCSLKKLSTIRSCSTNSYAFTSSS 453
>SPAC15A10.08 |ain1||alpha-actinin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 621
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 138 NRGPNKKLSKVETLRMAVEYIRNL-ESLLNIGHAD 171
NR P ++ ++E + A+EYI++ L NIG AD
Sbjct: 59 NRNPRMRVHRLENVNKALEYIKSKGMPLTNIGPAD 93
>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 503
Score = 28.3 bits (60), Expect = 2.0
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 139 RGPNKKLSKVETLRMAVEYIRNLESLLNIGHAD 171
RG N LS++ T +M + + + LE +N+G D
Sbjct: 427 RGKNLLLSRLSTKKMLLAFNKKLEEAVNLGGED 459
>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.9 bits (59), Expect = 2.7
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 126 EEVAAAFETTNSNRGPNKKLSKVETLRMAVEYIRNLESLLNIGHADKENTSRSCMESFPS 185
E+ A A N +KL +E ++ +Y +E++ H K N + + P
Sbjct: 408 EDCARALNAEQGNFVRGQKLH-LEISKIQKKYQNQIENMKKGSHVTKSNQYSEMIGNLPY 466
Query: 186 PASSSPRENS 195
P SS R S
Sbjct: 467 PTSSRKRTRS 476
>SPBC336.15 |pic1|SPBC685.01|INCENP-like|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1018
Score = 27.5 bits (58), Expect = 3.6
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 350 NSSFTENEDFCEVELKKELPDIQVTPEDREQFEETLKWWQEK 391
NS ++++ D + K LP +PE REQ + KW +K
Sbjct: 923 NSDYSDDSDDEGNKKKVNLPSWAESPELREQLKRQQKWDPDK 964
>SPBC19C2.09 |sre1||sterol regulatory element binding protein
Sre1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 900
Score = 27.5 bits (58), Expect = 3.6
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 141 PNKKLSKVETLRMAVEYIRNLESL-LNIGHADKENTSRSCMESFPSPASSS 190
P +KL+K L A EYIR+LE+ + +K+ + R PS A S
Sbjct: 312 PARKLNKGTILAKATEYIRHLEAKNKELQKTNKQLSDRLAFYEDPSMAPPS 362
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 27.5 bits (58), Expect = 3.6
Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 7/103 (6%)
Query: 289 PEQNYLSETEVPVSES------DFEIKYADSLNQHIQQSFNENTDIPFALNPDLILPENQ 342
P+ N L ETEV E F ++ ++ Q++ ++TD+ P++ P +
Sbjct: 370 PKPN-LPETEVDFGEPLEVEAPSFVVQNNSAVQPTTQKTSEDSTDLHTNEIPNVAQPPSS 428
Query: 343 FKFKESDNSSFTENEDFCEVELKKELPDIQVTPEDREQFEETL 385
F+ + + ++S EN D L PE+ F L
Sbjct: 429 FEKENNKDTSKLENPDISSSPLSPTEDLFPNDPEEENLFSAAL 471
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 26.6 bits (56), Expect = 6.2
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 352 SFTENEDFCEVELKKELPDIQVTPEDREQFE 382
S E E +++ K++L +++ PED+E++E
Sbjct: 354 SAAEKEFLKDMQEKEQLKGLRLLPEDKEEYE 384
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.6 bits (56), Expect = 6.2
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 17 AQILQETVNNSLNI-TNNDPNQNVRREIIVLRKKQR 51
A + ++ VNN L + T N NQ VR E++V K+R
Sbjct: 47 ATVEKKEVNNKLIMPTANRDNQGVREELLVSSFKER 82
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 26.6 bits (56), Expect = 6.2
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 325 NTDIPFALNPDLILPENQFKFKESDNSSFTENEDFCEVELKKELPDIQVTPEDREQFEE 383
NT +PF+ + E+ F+ +ESD+ E + E ++K E V + E+ E
Sbjct: 707 NTILPFSEASQNDVSEDDFENEESDDDKIFEQQTKIEDDVKNENKTEPVEEQKSEEKNE 765
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 26.6 bits (56), Expect = 6.2
Identities = 31/158 (19%), Positives = 53/158 (33%), Gaps = 7/158 (4%)
Query: 41 REIIVLRKKQRIQPADTVSVPALMRTIEPSSSSV-LAKKARYRENTSSDETVRTPTPLXX 99
+EI K + P + + EPS SV KK++ +E +SS+ + +
Sbjct: 38 KEIAKQSSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSESE 97
Query: 100 XXXXXXXXXXXXXXXDGFAALRRHIPEEVAAAFETTNSNRGPNKKLSKVETLRMAVEYIR 159
+ EEV E + + S+ E AV I
Sbjct: 98 SSSSESESSSSESESSSSESSSSESEEEVIVKTEEKKESSSESSSSSESEEEEEAVVKIE 157
Query: 160 NLESLLNIGHADKENTSRSCMESFPSPASSSPRENSQE 197
+ + +++S S S +SSS E +E
Sbjct: 158 EKK------ESSSDSSSESSSSESESESSSSESEEEEE 189
>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1076
Score = 26.2 bits (55), Expect = 8.3
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 121 RRHIPEEVAA-AFETTNSNRGPNKKLSKVETLR 152
+R +P EV+ A TT RGP+K K LR
Sbjct: 443 KRPVPSEVSPIAIFTTRMERGPSKNYEKPINLR 475
>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
Fep1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 564
Score = 26.2 bits (55), Expect = 8.3
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 267 VNSHILDAHFQFPNSAEHFSVIPEQNY-LSETEVPVSESDFEIKYADSLNQHIQQ 320
+ S QFP + S + ++NY L+ S+ D I+ +LNQHIQQ
Sbjct: 478 IQSSTSPVSLQFPPEVQG-SNVDKRNYALNVLSQLRSQHDLMIQELHNLNQHIQQ 531
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.311 0.127 0.351
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,884,485
Number of Sequences: 5004
Number of extensions: 84781
Number of successful extensions: 245
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 234
Number of HSP's gapped (non-prelim): 18
length of query: 404
length of database: 2,362,478
effective HSP length: 74
effective length of query: 330
effective length of database: 1,992,182
effective search space: 657420060
effective search space used: 657420060
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 55 (26.2 bits)
- SilkBase 1999-2023 -