Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001002-TA|BGIBMGA001002-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH, IPR011598|Helix-loop-helix
DNA-binding
(404 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1196 + 28316186-28316290,28317529-28317633,28317725-283177... 30 2.9
04_03_0272 + 13725262-13725443,13726036-13726114,13726329-137263... 30 2.9
01_01_0069 + 536787-537068,537193-537493,537528-537581,538848-53... 30 2.9
05_01_0511 + 4256220-4256828,4256920-4257175,4257247-4257309,425... 30 3.8
11_04_0460 - 17955102-17955146,17955253-17955310,17955442-179555... 29 6.6
08_02_1162 - 24811327-24812162,24815969-24816028,24816526-248167... 29 6.6
12_02_0356 + 17915029-17916236,17932970-17933283,17933936-179342... 29 8.8
11_03_0064 + 9518810-9519164,9519533-9520359 29 8.8
10_07_0179 - 13860745-13861571,13861940-13862294 29 8.8
09_01_0073 - 1057560-1058043,1058199-1058385,1058754-1059062,105... 29 8.8
04_03_0961 + 21263735-21263773,21264157-21264279,21266774-212668... 29 8.8
04_03_0647 + 18367321-18367675,18368044-18368885 29 8.8
02_04_0515 + 23582105-23583519,23583613-23583741,23583835-235839... 29 8.8
02_02_0305 + 8786599-8787184,8788613-8790001,8790370-8791196 29 8.8
01_06_1783 + 39845998-39846174,39846260-39846534,39846758-398468... 29 8.8
01_06_0392 + 28964006-28964204,28964496-28964977,28965075-28965176 29 8.8
>06_03_1196 +
28316186-28316290,28317529-28317633,28317725-28317796,
28318023-28318259,28318608-28318718,28318810-28318923,
28319272-28319373,28320238-28320306,28320447-28320553,
28321128-28321224,28321347-28321466,28321663-28321847,
28322065-28322353
Length = 570
Score = 30.3 bits (65), Expect = 2.9
Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 283 EHFSVIPE--QNYLSETEVPVSESDFEIKYADSLNQHIQQSFNENTDIPFALNPDLILPE 340
E++S++ NY S+ + + + D SL+ H++ N + D+ +++N I P
Sbjct: 482 EYWSMVKTTYNNYNSDVDDELVDLDAPEMNVGSLDDHVEIDLNSDDDLEYSMNKMSITPN 541
Query: 341 NQFKFKESDNS 351
F + NS
Sbjct: 542 RSFFHQIMANS 552
>04_03_0272 +
13725262-13725443,13726036-13726114,13726329-13726390,
13726575-13726700,13726780-13726879,13727143-13727226,
13727328-13727462
Length = 255
Score = 30.3 bits (65), Expect = 2.9
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 11 NASVNKAQILQETVNNSLNITNNDPNQNVRREIIVLRKKQRIQPADTVSVPALMRTIEPS 70
N +V Q+LQ V SL+ N V++E LRKK I + + + + E +
Sbjct: 159 NFTVRDLQLLQNQVEMSLHSIRNKKGSLVQKENSELRKKFNIAHQRNIELHKKLNSGEST 218
Query: 71 SSSVLAKKAR 80
SS + + ++
Sbjct: 219 SSEQVTRSSK 228
>01_01_0069 +
536787-537068,537193-537493,537528-537581,538848-539241,
539345-539595,539678-539798,539893-540133,540341-540445,
540571-540615,540738-540890,541132-541410,541705-541841,
541975-542017,542228-542329
Length = 835
Score = 30.3 bits (65), Expect = 2.9
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 224 LRQQQYVDIAASENFHLVSTPHLYDEEEGQPLTPSSDLLVQDEVNSHILDAHFQFPNSAE 283
L++ Q+ D + STPH + +++ PSS L + H L A F N+A+
Sbjct: 30 LKRMQH-DYSPQGTIITTSTPHDHHQQQQSVAAPSSYNLSHCRLLLHKLPAAFFGSNNAD 88
Query: 284 HFSVIPEQNYLSETEVPVSE 303
H I + + EV +E
Sbjct: 89 HAGAIQVRRRVGRGEVYETE 108
>05_01_0511 +
4256220-4256828,4256920-4257175,4257247-4257309,
4257397-4257491
Length = 340
Score = 29.9 bits (64), Expect = 3.8
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 328 IPFALNPDLILPENQFKFKESDNSSFTENEDFCEVE---LKKELPDIQVTPEDREQFEET 384
+PF D P Q + D S NE E + + +E+ D P E ++
Sbjct: 106 VPFVHPKD---PSVQMNMDDGDGPSAEVNETSVEEDWLLVTEEVVDHAREPHTEEAYQAY 162
Query: 385 LKWWQEKTRQTRPT 398
L+W+Q +TR TR T
Sbjct: 163 LRWYQPRTR-TRVT 175
>11_04_0460 -
17955102-17955146,17955253-17955310,17955442-17955593,
17955888-17955993,17956101-17956222,17956766-17956834,
17956969-17957214,17957331-17957373,17957449-17957520,
17957954-17958066,17958158-17958238,17958343-17958415,
17959413-17959519,17960410-17960514,17960684-17960974,
17961621-17961707,17961774-17961842,17961917-17961973,
17962057-17962155,17962223-17962312,17962395-17962511,
17964164-17964244,17964353-17964502,17964812-17964956,
17967359-17967510,17967647-17967784,17967838-17967914,
17968032-17968134
Length = 1015
Score = 29.1 bits (62), Expect = 6.6
Identities = 24/87 (27%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 287 VIPEQNYLSETEVPVSESDFEIKYADSLNQHIQQSFNENTDIPFAL-NPDLILPENQFKF 345
VI Q Y V + FE + N HI + AL N D+ ++ KF
Sbjct: 894 VIMIQRYKEVLVYSVLLAKFEPSQSGKANTHIMHGASHFLQCVHALWNRDITYDLSK-KF 952
Query: 346 KESDNSSFTENEDFCEVELKKELPDIQ 372
++ E E F E+E+++ L DI+
Sbjct: 953 AKAKRLGIDEEEGFQEIEMRQWLQDIR 979
>08_02_1162 -
24811327-24812162,24815969-24816028,24816526-24816725,
24817436-24817657,24817989-24818312,24818852-24818988
Length = 592
Score = 29.1 bits (62), Expect = 6.6
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 277 QFPNSAEHFSVIPEQNYLSETEVPVSESDFEIKYADSLNQHIQQSFN 323
+ P A+ S E + + +PV ESD +++ S+ H+ S+N
Sbjct: 190 ELPIDADSQSGCDESPHRTVFVLPVGESDIYVRFPTSIRHHMDGSYN 236
>12_02_0356 +
17915029-17916236,17932970-17933283,17933936-17934244,
17934613-17935439
Length = 885
Score = 28.7 bits (61), Expect = 8.8
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 294 LSETEVPVSESDFEIKYADSLNQHIQQSFNENTDIPFALNPD---LILPENQFKFKESDN 350
L E+P+ ES F I+ D+ Q +++S N F D I P N +KFK D+
Sbjct: 589 LKPLELPLEESYFIIE-TDASQQGMKRSMNYAGVECFTFGDDNKLRIFPPNSYKFKPKDH 647
Query: 351 SSFTENED 358
E ++
Sbjct: 648 IILDEVQE 655
>11_03_0064 + 9518810-9519164,9519533-9520359
Length = 393
Score = 28.7 bits (61), Expect = 8.8
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 294 LSETEVPVSESDFEIKYADSLNQHIQQSFNENTDIPFALNPD---LILPENQFKFKESDN 350
L E+P+ ES F I+ D+ Q +++S N F D I P N +KFK D+
Sbjct: 97 LKPLELPLEESYFIIE-TDASQQGMKRSMNYAGVECFTFGDDNKLRIFPPNSYKFKPKDH 155
Query: 351 SSFTENED 358
E ++
Sbjct: 156 IILDEVQE 163
>10_07_0179 - 13860745-13861571,13861940-13862294
Length = 393
Score = 28.7 bits (61), Expect = 8.8
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 294 LSETEVPVSESDFEIKYADSLNQHIQQSFNENTDIPFALNPD---LILPENQFKFKESDN 350
L E+P+ ES F I+ D+ Q +++S N F D I P N +KFK D+
Sbjct: 97 LKPLELPLEESYFIIE-TDASQQGMKRSMNYAGVECFTFGDDNKLRIFPPNSYKFKPKDH 155
Query: 351 SSFTENED 358
E ++
Sbjct: 156 IILDEVQE 163
>09_01_0073 -
1057560-1058043,1058199-1058385,1058754-1059062,
1059427-1060269,1061572-1062552,1063189-1063516
Length = 1043
Score = 28.7 bits (61), Expect = 8.8
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 294 LSETEVPVSESDFEIKYADSLNQHIQQSFNENTDIPFALNPD---LILPENQFKFKESDN 350
L E+P+ ES F I+ D+ Q +++S N F D I P N +KFK D+
Sbjct: 799 LKPLELPLEESYFIIE-TDASQQGMKRSMNYAGVECFTFGDDNKLRIFPPNSYKFKPKDH 857
Query: 351 SSFTENED 358
E ++
Sbjct: 858 IILDEVQE 865
>04_03_0961 +
21263735-21263773,21264157-21264279,21266774-21266847,
21266939-21267095,21267554-21267694,21267739-21267823,
21268810-21268903,21269041-21269239,21269515-21269549,
21270076-21270631,21270722-21270882,21271704-21271718,
21273078-21273330,21273439-21273562,21273688-21273788,
21274870-21274938,21275060-21275191,21275270-21275404,
21275489-21275551,21275636-21275881,21276007-21276285
Length = 1026
Score = 28.7 bits (61), Expect = 8.8
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 223 GLRQQQYVDIAASENFHLVSTPHLYDEEEGQPLTPSSDLLVQDEVNS 269
G ++ Y+ + F + + P LYD + +P + D+L++DE N+
Sbjct: 302 GFQEATYLWEDDDDRFSVENVP-LYDSADDEPTSIPKDILIKDEPNT 347
>04_03_0647 + 18367321-18367675,18368044-18368885
Length = 398
Score = 28.7 bits (61), Expect = 8.8
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 294 LSETEVPVSESDFEIKYADSLNQHIQQSFNENTDIPFALNPD---LILPENQFKFKESDN 350
L E+P+ ES F I+ D+ Q +++S N F D I P N +KFK D+
Sbjct: 97 LKPLELPLDESYFIIE-TDASQQGMKRSMNYAGVECFTFGDDNKLRIFPPNSYKFKPKDH 155
Query: 351 SSFTENED 358
E ++
Sbjct: 156 IILDEVQE 163
>02_04_0515 +
23582105-23583519,23583613-23583741,23583835-23583970,
23584051-23584139,23584236-23584347,23584427-23584533,
23584630-23584723
Length = 693
Score = 28.7 bits (61), Expect = 8.8
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
Query: 10 RNASVNKAQILQETVNNSLNITNNDPNQNVRREIIVLRKKQRIQPADTVSVPALMRTIEP 69
+N V++ + T+ N L D + V +KK+ + P D++ + + P
Sbjct: 200 KNRIVDEEEEGYPTMRNILTSRWADAGDE-EENVFVPKKKKSVSPVDSIERGSTKKVTSP 258
Query: 70 SSSSVLAKKARYRENTSSDETV 91
S VL + + SSD V
Sbjct: 259 ESGEVLVYNSVRSSSRSSDSGV 280
>02_02_0305 + 8786599-8787184,8788613-8790001,8790370-8791196
Length = 933
Score = 28.7 bits (61), Expect = 8.8
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Query: 294 LSETEVPVSESDFEIKYADSLNQHIQQSFNENTDIPFALNPD---LILPENQFKFKESDN 350
L E+P+ ES F I+ D+ Q +++S N F D I P N +KFK D+
Sbjct: 637 LKPLELPLEESYFIIE-TDASQQGMKRSMNYAGVECFTFGDDNKLRIFPPNSYKFKPKDH 695
Query: 351 SSFTENED 358
E ++
Sbjct: 696 IILDEVQE 703
>01_06_1783 +
39845998-39846174,39846260-39846534,39846758-39846891,
39846992-39847116,39847312-39847494,39847610-39847644,
39847756-39847912,39847936-39848049,39848143-39848235,
39848316-39848455,39848606-39848676,39848759-39848839,
39851475-39851954,39852110-39852387,39853346-39854143
Length = 1046
Score = 28.7 bits (61), Expect = 8.8
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 182 SFPSPASSSPRENSQERSYFMIS 204
+FP+P+SSSPR + +Y ++S
Sbjct: 2 AFPAPSSSSPRRRGRGLAYLLVS 24
>01_06_0392 + 28964006-28964204,28964496-28964977,28965075-28965176
Length = 260
Score = 28.7 bits (61), Expect = 8.8
Identities = 33/155 (21%), Positives = 57/155 (36%), Gaps = 12/155 (7%)
Query: 160 NLESLLNIGHADKENTSRSCMESFPSPASSSPRENSQERSYFMISSPAXXXXXXXXXXID 219
+L S N+ H D S E +P +++ + +ER P +D
Sbjct: 57 HLPSRPNVPHVDVSEDSMESSEEMVTPRAAASEADEEERKAATSEVPVEVVEAGEEVMVD 116
Query: 220 GLP-----GLRQQQYVDIAASENFHLVSTPHLYDEEEGQPLTPSSDLLVQDEVNSHILDA 274
LP G ++QQ +E +V P + EE + P D Q E +L
Sbjct: 117 ALPPEAAAGAQEQQ----GKAEALVVVQEPEVKREELVAKVHPMHDPEPQGE---EVLIV 169
Query: 275 HFQFPNSAEHFSVIPEQNYLSETEVPVSESDFEIK 309
++ + V ++ + ET P + + E K
Sbjct: 170 EAAAVSAVQEPEVKRDEVVVMETAAPPAVQESETK 204
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.311 0.127 0.351
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,655,509
Number of Sequences: 37544
Number of extensions: 430291
Number of successful extensions: 933
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 927
Number of HSP's gapped (non-prelim): 17
length of query: 404
length of database: 14,793,348
effective HSP length: 84
effective length of query: 320
effective length of database: 11,639,652
effective search space: 3724688640
effective search space used: 3724688640
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 61 (28.7 bits)
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