Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001002-TA|BGIBMGA001002-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH, IPR011598|Helix-loop-helix
DNA-binding
(404 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27345| Best HMM Match : HLH (HMM E-Value=1.2e-20) 50 3e-06
SB_43185| Best HMM Match : HLH (HMM E-Value=4e-20) 45 1e-04
SB_535| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 1e-04
SB_32910| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_52528| Best HMM Match : HLH (HMM E-Value=3.9e-18) 41 0.002
SB_35548| Best HMM Match : BPL_LipA_LipB (HMM E-Value=1.5e-27) 40 0.003
SB_56921| Best HMM Match : HLH (HMM E-Value=9.9e-19) 36 0.059
SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.059
SB_28433| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.077
SB_56922| Best HMM Match : HLH (HMM E-Value=1.9e-21) 35 0.10
SB_39365| Best HMM Match : HLH (HMM E-Value=5.5e-07) 35 0.10
SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44) 35 0.14
SB_27857| Best HMM Match : Cadherin (HMM E-Value=0) 34 0.24
SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12) 33 0.31
SB_17029| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.41
SB_3655| Best HMM Match : BTB (HMM E-Value=0.035) 32 0.72
SB_12347| Best HMM Match : HLH (HMM E-Value=3.8e-21) 32 0.72
SB_37377| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.95
SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006) 31 1.3
SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10) 31 1.7
SB_9126| Best HMM Match : HLH (HMM E-Value=2.5e-18) 31 1.7
SB_47522| Best HMM Match : HLH (HMM E-Value=1e-17) 31 2.2
SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23) 31 2.2
SB_24365| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_16340| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.9
SB_39386| Best HMM Match : RVT_1 (HMM E-Value=7.1e-28) 30 3.9
SB_26913| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.9
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.9
SB_2420| Best HMM Match : GSH_synthase (HMM E-Value=7.9) 30 3.9
SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05) 29 5.1
SB_2155| Best HMM Match : RepA1_leader (HMM E-Value=0.86) 29 5.1
SB_54| Best HMM Match : Actin (HMM E-Value=0) 29 6.7
SB_8598| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.9
SB_4414| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.9
SB_160| Best HMM Match : PRP1_N (HMM E-Value=2.7) 29 8.9
>SB_27345| Best HMM Match : HLH (HMM E-Value=1.2e-20)
Length = 153
Score = 50.0 bits (114), Expect = 3e-06
Identities = 30/52 (57%), Positives = 36/52 (69%), Gaps = 12/52 (23%)
Query: 115 DGFAALRRHIPEEVAAAFETTNSNRGPNKKLSKVETLRMAVEYIRNLESLLN 166
DGFAALR+HIP TT N KKLSKVETLR A+EYI++L+ +LN
Sbjct: 89 DGFAALRKHIP--------TTPVN----KKLSKVETLRTAIEYIKHLQRILN 128
>SB_43185| Best HMM Match : HLH (HMM E-Value=4e-20)
Length = 232
Score = 45.2 bits (102), Expect = 1e-04
Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 14/58 (24%)
Query: 115 DGFAALRRHIPEEVAAAFETTNSNRGPNKKLSKVETLRMAVEYIRNLESLLNIGHADK 172
DGF LR+H+P + NKKLSKV+TLR A+EYIR+L+ LL G A+K
Sbjct: 82 DGFMRLRKHVPTDPK------------NKKLSKVKTLRSAIEYIRHLQHLL--GQANK 125
>SB_535| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 45.2 bits (102), Expect = 1e-04
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 12/64 (18%)
Query: 115 DGFAALRRHIPEEVAAAFETTNSNRGPNKKLSKVETLRMAVEYIRNLESLLNIGHADKEN 174
+G+A LR H+PEE + +K++SKVETLR A+ YI++LESLL A
Sbjct: 71 EGYARLREHLPEEPS------------DKRMSKVETLRAAIRYIKHLESLLQAEAAGSSE 118
Query: 175 TSRS 178
++S
Sbjct: 119 GNKS 122
>SB_32910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 155
Score = 42.3 bits (95), Expect = 7e-04
Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 12/58 (20%)
Query: 115 DGFAALRRHIPEEVAAAFETTNSNRGPNKKLSKVETLRMAVEYIRNLESLLNIGHADK 172
DGF++LR+HIP F KKLSKVETLR AV YI++L+SL+ A+K
Sbjct: 88 DGFSSLRQHIPY-----FPE-------KKKLSKVETLRCAVAYIKHLQSLIEEYDAEK 133
>SB_52528| Best HMM Match : HLH (HMM E-Value=3.9e-18)
Length = 138
Score = 41.1 bits (92), Expect = 0.002
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
Query: 122 RHIPEEVAAAFETTNSN---RGPNKKLSKVETLRMAVEYIRNLESLLNIGHADKENTSRS 178
R+ ++V AAFET + R KK SK++T+R+A YI++L LL++ + TS S
Sbjct: 45 RNRVQQVNAAFETLRNKIPLRALEKKPSKIDTIRLATRYIQDLTQLLSLAETEGRITSPS 104
>SB_35548| Best HMM Match : BPL_LipA_LipB (HMM E-Value=1.5e-27)
Length = 378
Score = 40.3 bits (90), Expect = 0.003
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 137 SNRGPNKKLSKVETLRMAVEYIRNLESLLNIGHADKENTSRSCMESFPSPASSSP 191
S +GP +KL+++ETLR+A YI L +L D+ S C E + + SSP
Sbjct: 325 SGKGPERKLTQIETLRLATHYIMALSEMLE----DENQKSSDCCECGHTYSRSSP 375
>SB_56921| Best HMM Match : HLH (HMM E-Value=9.9e-19)
Length = 200
Score = 35.9 bits (79), Expect = 0.059
Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 14/90 (15%)
Query: 117 FAALRRHIPEEVAAAFETTNSNRGPNKKLSKVETLRMAVEYIRNLESLLNIGHADKENTS 176
FA LR+HIP N + KLSK++TL++A+ YI +LE L+ G +
Sbjct: 60 FAELRKHIP------------NVPSDTKLSKIKTLQLAMSYIHHLELQLS-GEESRVVIV 106
Query: 177 RSCMESFPSPASSSPRENSQERSYFMISSP 206
+ S P P + RE Y + SSP
Sbjct: 107 KHVTPSEPQPVIRT-REREPSIEYDLPSSP 135
>SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 35.9 bits (79), Expect = 0.059
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Query: 115 DGFAALRRHIPEEVAAAFETTNSNRGPNKKLSKVETLRMAVEYIRNLESLLNIGHADKEN 174
D LR H+P+ V A +KKLSK++TLR+A+ YI +L +L N
Sbjct: 55 DALLHLRYHLPQTVVAK----------DKKLSKIQTLRLAIRYISDLFEILQSDDGQGIN 104
Query: 175 TSRS--CMESFPSPASSSPRENS 195
S C E + ENS
Sbjct: 105 ISNGQLCAEYLDGNDLLTSSENS 127
>SB_28433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 536
Score = 35.5 bits (78), Expect = 0.077
Identities = 19/33 (57%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 141 PNKKLSKVETLRMAVEYIRNLESLLNIGHADKE 173
P+KKLSKVE LR AV+YI+ L+ +L G D E
Sbjct: 470 PDKKLSKVEILRTAVKYIQFLDGVLE-GMGDGE 501
>SB_56922| Best HMM Match : HLH (HMM E-Value=1.9e-21)
Length = 157
Score = 35.1 bits (77), Expect = 0.10
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 138 NRGPNKKLSKVETLRMAVEYIRNLESLLNIGHADKENTSRS 178
N P+ KLSK++TLR+A+ YIR L +L K R+
Sbjct: 60 NVPPDTKLSKIKTLRLAISYIRYLMDILEESKDGKPRVRRN 100
>SB_39365| Best HMM Match : HLH (HMM E-Value=5.5e-07)
Length = 105
Score = 35.1 bits (77), Expect = 0.10
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 141 PNKKLSKVETLRMAVEYIRNLESLLNIGHADKENT 175
PN+KLSK L+ A+EYIR+L+ NI + NT
Sbjct: 67 PNRKLSKNMILQTAIEYIRSLQEEFNITVDPQSNT 101
>SB_58463| Best HMM Match : DUF1168 (HMM E-Value=0.44)
Length = 603
Score = 34.7 bits (76), Expect = 0.14
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 3/108 (2%)
Query: 296 ETEVPVSESDFEIKYADSLNQHIQQSFNENTDIPFALNPDLILPENQFKFKESDNSSFTE 355
E ++ + E KYA L Q + Q + +N +L ++Q K +ES E
Sbjct: 24 ENQLAEEKYHLEQKYASMLQQVLVQKRLDLLQSESVIN---LLRDHQQKVRESKQKEVAE 80
Query: 356 NEDFCEVELKKELPDIQVTPEDREQFEETLKWWQEKTRQTRPTKTLNK 403
+++ +V + EL + P+D K Q ++Q +KT NK
Sbjct: 81 SKNGSQVAKESELLATKTEPQDVPATGHYAKGLQSPSKQCSNSKTSNK 128
>SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 2418
Score = 33.9 bits (74), Expect = 0.24
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 25 NNSLNITNNDPNQNVRREIIVLRKKQRIQPADTVSVPALMRTIEPSSSSVLAKKARYREN 84
NN L+ T + NVR ++++ + + VP + PS S ++ K+ Y +N
Sbjct: 954 NNQLS-TASTLTPNVRYQLLIRASDSATRNPSSAQVPVYVSVYSPSESPIVFDKSSYNQN 1012
Query: 85 TSSDETVRT 93
D + T
Sbjct: 1013 LPEDSSANT 1021
>SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)
Length = 1650
Score = 33.5 bits (73), Expect = 0.31
Identities = 13/25 (52%), Positives = 21/25 (84%)
Query: 142 NKKLSKVETLRMAVEYIRNLESLLN 166
+++L+K+ETLR+A+EYI+ L LN
Sbjct: 104 SRRLTKLETLRLAIEYIKELTQSLN 128
>SB_17029| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 434
Score = 33.1 bits (72), Expect = 0.41
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 231 DIAASENFHLVSTPHLYDEEEGQPLTPSSDLLVQDEV 267
DI + FHL+ P + EE G+ L+ +SDLL + E+
Sbjct: 216 DIIGDKAFHLIRFPTMSKEEIGEVLSQASDLLTKKEL 252
>SB_3655| Best HMM Match : BTB (HMM E-Value=0.035)
Length = 369
Score = 32.3 bits (70), Expect = 0.72
Identities = 17/56 (30%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 303 ESDFEIKYADSLNQHIQQSFNENTDIPFALNPDLILPENQFKFKESDNSSFTENED 358
++D + D+++ I++S NTDI + + + LP++ K K S + TEN+D
Sbjct: 142 KTDHPLDVTDAIHDSIEESIFINTDINQS-SSESDLPDSDEKMKTSSANEHTENDD 196
>SB_12347| Best HMM Match : HLH (HMM E-Value=3.8e-21)
Length = 143
Score = 32.3 bits (70), Expect = 0.72
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 142 NKKLSKVETLRMAVEYIRNLESLLNIG 168
++KLSK+ETLR+A YI +L ++L G
Sbjct: 83 DRKLSKIETLRLASSYIAHLSTILISG 109
>SB_37377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 31.9 bits (69), Expect = 0.95
Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 14/66 (21%)
Query: 115 DGFAALRRHIPEEVAAAFETTNSNRGPNKKLSKVETLRMAVEYIRNLESLLN--IGHADK 172
+ F LR+HIP +E K+LSKV+TLR+A+ YI L ++N + H+
Sbjct: 61 EAFEGLRKHIP---TLPYE---------KRLSKVDTLRLAIGYIGFLTEMINSDMSHSQA 108
Query: 173 ENTSRS 178
SR+
Sbjct: 109 LQPSRT 114
>SB_50950| Best HMM Match : AAA_5 (HMM E-Value=0.0006)
Length = 1552
Score = 31.5 bits (68), Expect = 1.3
Identities = 20/77 (25%), Positives = 33/77 (42%)
Query: 1 MSSIDIVVFRNASVNKAQILQETVNNSLNITNNDPNQNVRREIIVLRKKQRIQPADTVSV 60
M +D + NKA + + N L + NQ + E +++K +P DT +
Sbjct: 511 MVQLDCDDLKRGLANKANKFADQLLNKLAEEHRSENQRIISEFESIKEKALTKPEDTKEM 570
Query: 61 PALMRTIEPSSSSVLAK 77
L + IE + S L K
Sbjct: 571 IDLQKFIEEAKSKGLIK 587
>SB_44315| Best HMM Match : M (HMM E-Value=2.2e-10)
Length = 2155
Score = 31.1 bits (67), Expect = 1.7
Identities = 27/102 (26%), Positives = 45/102 (44%), Gaps = 7/102 (6%)
Query: 307 EIKYADSLNQHIQQSFNENTDIPFALNPDLILPENQFKFKESDNSSFTENEDFCEVEL-- 364
E+K +S +Q ++Q D+ + DL E FK E +NS+ N + E EL
Sbjct: 1042 ELKERNSAHQELEQKMQ---DLRENFSADLSELEQNFKIIEEENSALKLNVEALESELQL 1098
Query: 365 --KKELPDIQVTPEDREQFEETLKWWQEKTRQTRPTKTLNKK 404
K++L + + RE +E + Q K R + N +
Sbjct: 1099 SVKEKLENEHILRGLREDLQEAMSDKQIKDRALHDLRIENDR 1140
>SB_9126| Best HMM Match : HLH (HMM E-Value=2.5e-18)
Length = 179
Score = 31.1 bits (67), Expect = 1.7
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 143 KKLSKVETLRMAVEYIRNLESLLN 166
+KLSK+E LR+A++YI L LN
Sbjct: 73 QKLSKIEVLRLAIDYIAMLSCYLN 96
>SB_47522| Best HMM Match : HLH (HMM E-Value=1e-17)
Length = 213
Score = 30.7 bits (66), Expect = 2.2
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 115 DGFAALRRHIPEEVAAAFETTNSNRGPNKKLSKVETLRMAVEYIRNLESLLNIGHADKEN 174
D F +LR+ IP+ TN N+ +K SK+ TLR+A+ YI L +L G E
Sbjct: 85 DAFDSLRKAIPK--------TNYNQ--EEKPSKIATLRLAIHYIAALSDIL--GKPIPEP 132
Query: 175 TSRSCMESFPSPASSSPRENSQE 197
+ S A + +++QE
Sbjct: 133 EPKEARRDGESRAKRARLDDTQE 155
>SB_35812| Best HMM Match : Atrophin-1 (HMM E-Value=0.23)
Length = 4240
Score = 30.7 bits (66), Expect = 2.2
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Query: 345 FKESDNSSFTENEDFCEVELKKELPDIQVTPEDREQFEETLKWWQEKTRQTRPTKT 400
F S +S+ ++ + K+E IQ P DREQ ET + E +R+T P T
Sbjct: 664 FSSSQSSASKQSSQIPQQSRKEEAVTIQHPPYDREQ--ETRPTFDETSRRTSPGMT 717
>SB_24365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 30.3 bits (65), Expect = 2.9
Identities = 44/190 (23%), Positives = 75/190 (39%), Gaps = 30/190 (15%)
Query: 218 IDGLPGLRQQQYVDIAASENFHLVSTPHLYDEEEGQPLTPSSDLLVQDEVNSHILDAHFQ 277
+DG P + Q + + S+ + P D++E + T + D QD+ ++
Sbjct: 306 LDGTPHMDFQSKEEASQSQTVNEDKVPTTNDDDEDKASTTNDD--DQDKAST-------- 355
Query: 278 FPNSAEHFSVIPEQNYLSETEVPVSESDFEIKYADSLNQHIQQSFNENTDIPFA--LNPD 335
N E F I + + E +SE K D L Q I++ ++D PD
Sbjct: 356 -TNDNEEFEEIEKNPPVEPAEYTISEE----KRKDLLRQIIEEESTPSSDEDDGDYEEPD 410
Query: 336 LILP--ENQFKFKESDNSSFTENEDFCEVELKKELPDIQVTPEDREQFEETLKWWQEKTR 393
P + + E + +S E+ED D + ED ++ EE W + KT+
Sbjct: 411 DDQPVHPSHYSVPEDEITSADEDED-----------DDKDEKEDEDELEEKEDWSKNKTK 459
Query: 394 QTRPTKTLNK 403
+ KT K
Sbjct: 460 KKTKEKTKEK 469
>SB_16340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 330
Score = 30.3 bits (65), Expect = 2.9
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 340 ENQFKFKESDNSSFTENEDFCEVELKKELPDIQVTPEDREQFEETLKWWQEKTRQTR 396
E Q + K+S + + N++ E ++ K ++Q E+RE+FEE LK E+ +TR
Sbjct: 153 EQQKRLKDSYDETVKRNQEL-EEQVLKMADEMQ---EERERFEEALKVVTERLVETR 205
>SB_39386| Best HMM Match : RVT_1 (HMM E-Value=7.1e-28)
Length = 1239
Score = 29.9 bits (64), Expect = 3.9
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 292 NYLSETEVPVSESDFE-IKYADSLNQHIQQSFNENTDIPFALNPDLILPENQFKFKESDN 350
N L + E P+ ++ IK + + +E T P LN +L+L E+ K N
Sbjct: 773 NGLKKMEGPIGDAAANLIKRWKEIVTGKPDNTSELTPTPVKLNTELLLQESDTARKSLLN 832
Query: 351 SSFTENEDFC 360
+SF+E E C
Sbjct: 833 TSFSEKEKNC 842
>SB_26913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 121
Score = 29.9 bits (64), Expect = 3.9
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 69 PSSSSVLAKKARYRENTSSDETVRTP 94
P + V KK R+R TS ET+ TP
Sbjct: 54 PETEDVTPKKTRHRRQTSQSETIDTP 79
>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3760
Score = 29.9 bits (64), Expect = 3.9
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 10/62 (16%)
Query: 335 DLILPENQFKFKESDNSSFTENE----------DFCEVELKKELPDIQVTPEDREQFEET 384
D ++ E K KES+N + E E D ++ L+K+L D+Q E+ + E
Sbjct: 3003 DRVIDEKTIKDKESENKTLKEEEQDLKRRLRQADNVQLNLRKDLEDLQKEKEELRKENEN 3062
Query: 385 LK 386
LK
Sbjct: 3063 LK 3064
Score = 29.1 bits (62), Expect = 6.7
Identities = 26/114 (22%), Positives = 53/114 (46%), Gaps = 8/114 (7%)
Query: 293 YLSETEVPVSESDFEIKYADSLNQHIQQSFNENTDIPFALNPDLILPENQFKFKESDNSS 352
Y ET + +++ + K+ L Q I+ N+N ++ N FK K S+
Sbjct: 2642 YKQETLIQSIKTEND-KFKKRLEQEIKDKENKNLELQRLTNQI-----EDFKTKLSEVEG 2695
Query: 353 FTENEDFCEVELKKELPDIQVTPEDREQFEETLKWWQEKTRQTRP--TKTLNKK 404
+ + + ++ E+ ++ T ED+E+ EE L ++K ++ K LN++
Sbjct: 2696 RVKAANSEKKTIEDEVKKLRETVEDKEELEEILGEMRDKRKRLHDDIEKALNER 2749
>SB_2420| Best HMM Match : GSH_synthase (HMM E-Value=7.9)
Length = 343
Score = 29.9 bits (64), Expect = 3.9
Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 15 NKAQILQETVNNSLNITNNDPNQNVRREIIVLRKKQRIQPADTVSV 60
N +L +T ++ LN+ +N P QN +I L KK+R+ SV
Sbjct: 99 NSKSLLGKT-HSLLNLVDNSPIQNKEESVIPLLKKRRVDTTAQESV 143
>SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1266
Score = 29.5 bits (63), Expect = 5.1
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 115 DGFAALRRHIPEEVAAAFETTNSNRGPNKKLSKVETLRMAVEYIRNLESLLNIGHADKEN 174
D A +RR +P+ AA + + G + K + R A + + N A ++
Sbjct: 28 DSGAGIRRRVPQRTAADGRSAKRSTGSWRSREKKQAERGAT-----ITKMSN--RAPTQH 80
Query: 175 TSRSCMESFPSPASSSPRENSQERS 199
RS ESF PA S R N + S
Sbjct: 81 RRRSSNESFYRPARESVRRNPEGMS 105
>SB_44156| Best HMM Match : Extensin_2 (HMM E-Value=0.05)
Length = 1878
Score = 29.5 bits (63), Expect = 5.1
Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 5/119 (4%)
Query: 38 NVRREIIVLRKKQRIQPADTVSVPALMRTIEPSSSSVLAKKARYRENTSSDETVRTPTPL 97
++ RE+ + K + PA T P + R++ S+ ++ A S+ E V P
Sbjct: 471 SILRELCIHAKHVQPIPASTRPPPQVKRSLSQGSAPTWSRNAGDDSIKSNQEPV-VPCKR 529
Query: 98 XXXXXXXXXXXXXXXXXDGFAALRRHIPEEVAAAFETTNSNRGPNK----KLSKVETLR 152
GFAA R E + + SN G +LS+V+TLR
Sbjct: 530 PRSDSNVGSVSGLARNVVGFAAAERERLRESLSVENSVRSNLGRQSLAQVQLSQVDTLR 588
>SB_2155| Best HMM Match : RepA1_leader (HMM E-Value=0.86)
Length = 427
Score = 29.5 bits (63), Expect = 5.1
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Query: 313 SLNQHIQQSFNENTDIPFALNPDLILPENQFKFKESDNSSFTENEDF 359
SLN I + +E + F ++ LP+ FKESD S E+E+F
Sbjct: 28 SLNVDISDALSERDRVKFTVHTKTTLPD----FKESDFSVVREHEEF 70
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 29.1 bits (62), Expect = 6.7
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 288 IPEQNYLSETEVPVSESDFEIKYADSLNQHIQQSFNENTDIPFALNPDLILPENQFKFKE 347
IP+ N + EV D + +D +N I ++ N+N NPDLIL E
Sbjct: 1963 IPDGN---DIEVESGVFDANREESDDINDMIIKTTNDNPVETSPKNPDLILEEG-----S 2014
Query: 348 SDNSSFTENEDFCEV 362
S SF ++ED ++
Sbjct: 2015 SYKPSFNDDEDILDL 2029
>SB_8598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 238
Score = 28.7 bits (61), Expect = 8.9
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 322 FNENTDIPFALNPDLILPENQFK-FKESDNSSFTENED 358
F N+D F +N D + N + F + ++ FT N D
Sbjct: 25 FTSNSDAVFTINTDAVFTSNTYAVFTSNSDAVFTSNSD 62
>SB_4414| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 877
Score = 28.7 bits (61), Expect = 8.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 363 ELKKELPDIQVTPEDREQFEETLKWWQEKTRQTRPTKT 400
+L+ +LP+++VT ED +Q + + W + RP T
Sbjct: 36 DLRHDLPEVRVTSEDTQQRGDRNQRWISRAGCIRPKTT 73
>SB_160| Best HMM Match : PRP1_N (HMM E-Value=2.7)
Length = 257
Score = 28.7 bits (61), Expect = 8.9
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 344 KFKESDNSSFTENEDFCEVELKKE--LPDIQVTPEDREQFEETLKWWQEK 391
KF+ES + + +L+KE D Q+T ED EQ E+L+ +EK
Sbjct: 4 KFRESHIAKLERMRKSSKEDLEKEEDTRDQQITREDLEQTRESLQQLKEK 53
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.311 0.127 0.351
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,849,542
Number of Sequences: 59808
Number of extensions: 535308
Number of successful extensions: 1295
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1258
Number of HSP's gapped (non-prelim): 46
length of query: 404
length of database: 16,821,457
effective HSP length: 84
effective length of query: 320
effective length of database: 11,797,585
effective search space: 3775227200
effective search space used: 3775227200
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 61 (28.7 bits)
- SilkBase 1999-2023 -