Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001002-TA|BGIBMGA001002-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH, IPR011598|Helix-loop-helix
DNA-binding
(404 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U39472-4|AAK31389.2| 319|Caenorhabditis elegans Helix loop heli... 38 0.013
U39472-3|AAN39683.1| 320|Caenorhabditis elegans Helix loop heli... 38 0.013
U39472-2|AAN39684.1| 324|Caenorhabditis elegans Helix loop heli... 38 0.013
M59940-2|AAA16290.1| 320|Caenorhabditis elegans CeMyoD, alterna... 38 0.013
M59940-1|AAA16289.1| 324|Caenorhabditis elegans CeMyoD protein. 38 0.013
Z47356-3|CAA87416.1| 268|Caenorhabditis elegans Hypothetical pr... 37 0.029
Z68338-7|CAA92758.1| 203|Caenorhabditis elegans Hypothetical pr... 36 0.068
U78953-1|AAB38323.1| 185|Caenorhabditis elegans basic helix-loo... 36 0.068
U00043-11|AAN65290.1| 641|Caenorhabditis elegans Hypothetical p... 33 0.27
U00043-10|AAC77505.1| 779|Caenorhabditis elegans Hypothetical p... 33 0.27
Z83103-9|CAI79157.1| 376|Caenorhabditis elegans Hypothetical pr... 33 0.36
U28944-18|AAA68375.2| 246|Caenorhabditis elegans Helix loop hel... 32 0.63
AF125972-1|AAD14770.2| 349|Caenorhabditis elegans Hypothetical ... 32 0.63
AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical... 32 0.83
U58739-3|AAB00609.1| 237|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z69787-9|CAA93634.1| 226|Caenorhabditis elegans Hypothetical pr... 31 1.9
Z54238-2|CAA90994.1| 200|Caenorhabditis elegans Hypothetical pr... 31 1.9
Z81523-2|CAB04248.1| 928|Caenorhabditis elegans Hypothetical pr... 30 2.5
Z81523-1|CAB04241.1| 944|Caenorhabditis elegans Hypothetical pr... 30 2.5
U50199-4|AAA91264.2| 142|Caenorhabditis elegans Abnormal cell l... 30 2.5
U15418-1|AAA67360.1| 71|Caenorhabditis elegans LIN-32 protein. 30 2.5
U51999-7|AAA96089.1| 89|Caenorhabditis elegans Helix loop heli... 30 3.4
AF099925-14|AAX55690.1| 679|Caenorhabditis elegans Calcium bind... 30 3.4
Z66494-2|CAA91257.1| 821|Caenorhabditis elegans Hypothetical pr... 29 4.5
U64835-5|AAG24196.1| 592|Caenorhabditis elegans Hypothetical pr... 29 4.5
U40421-1|AAA81437.2| 178|Caenorhabditis elegans Helix loop heli... 29 4.5
U10402-7|AAA19069.1| 192|Caenorhabditis elegans C. elegans neur... 29 4.5
AF037063-1|AAC26105.1| 178|Caenorhabditis elegans twist protein. 29 4.5
AC084158-30|AAK68574.1| 184|Caenorhabditis elegans Neurogenin p... 29 4.5
Z70205-5|CAA94115.2| 528|Caenorhabditis elegans Hypothetical pr... 29 5.9
U58732-4|AAB00595.1| 147|Caenorhabditis elegans Helix loop heli... 29 5.9
AF369899-1|AAK72958.1| 147|Caenorhabditis elegans Fer3-like pro... 29 5.9
>U39472-4|AAK31389.2| 319|Caenorhabditis elegans Helix loop helix
protein 1, isoformc protein.
Length = 319
Score = 37.9 bits (84), Expect = 0.013
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 121 RRHIPEEVAAAFETTNSNR--GPNKKLSKVETLRMAVEYIRNLESLL 165
RR + +V AFE PN++L KVE LR A++YI NLE +L
Sbjct: 165 RRRL-RKVNEAFEVVKQRTCPNPNQRLPKVEILRSAIDYINNLERML 210
>U39472-3|AAN39683.1| 320|Caenorhabditis elegans Helix loop helix
protein 1, isoforma protein.
Length = 320
Score = 37.9 bits (84), Expect = 0.013
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 121 RRHIPEEVAAAFETTNSNR--GPNKKLSKVETLRMAVEYIRNLESLL 165
RR + +V AFE PN++L KVE LR A++YI NLE +L
Sbjct: 161 RRRL-RKVNEAFEVVKQRTCPNPNQRLPKVEILRSAIDYINNLERML 206
>U39472-2|AAN39684.1| 324|Caenorhabditis elegans Helix loop helix
protein 1, isoformb protein.
Length = 324
Score = 37.9 bits (84), Expect = 0.013
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 121 RRHIPEEVAAAFETTNSNR--GPNKKLSKVETLRMAVEYIRNLESLL 165
RR + +V AFE PN++L KVE LR A++YI NLE +L
Sbjct: 165 RRRL-RKVNEAFEVVKQRTCPNPNQRLPKVEILRSAIDYINNLERML 210
>M59940-2|AAA16290.1| 320|Caenorhabditis elegans CeMyoD,
alternatively spliced productprotein.
Length = 320
Score = 37.9 bits (84), Expect = 0.013
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 121 RRHIPEEVAAAFETTNSNR--GPNKKLSKVETLRMAVEYIRNLESLL 165
RR + +V AFE PN++L KVE LR A++YI NLE +L
Sbjct: 161 RRRL-RKVNEAFEVVKQRTCPNPNQRLPKVEILRSAIDYINNLERML 206
>M59940-1|AAA16289.1| 324|Caenorhabditis elegans CeMyoD protein.
Length = 324
Score = 37.9 bits (84), Expect = 0.013
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 121 RRHIPEEVAAAFETTNSNR--GPNKKLSKVETLRMAVEYIRNLESLL 165
RR + +V AFE PN++L KVE LR A++YI NLE +L
Sbjct: 165 RRRL-RKVNEAFEVVKQRTCPNPNQRLPKVEILRSAIDYINNLERML 210
>Z47356-3|CAA87416.1| 268|Caenorhabditis elegans Hypothetical
protein T15H9.3 protein.
Length = 268
Score = 36.7 bits (81), Expect = 0.029
Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 12/51 (23%)
Query: 115 DGFAALRRHIPEEVAAAFETTNSNRGPNKKLSKVETLRMAVEYIRNLESLL 165
DG+ LR+H+P F+ K++SKV+TLR+A+ YI++L++LL
Sbjct: 191 DGYERLRKHLPVH----FD--------EKRISKVDTLRLAIRYIKHLDNLL 229
>Z68338-7|CAA92758.1| 203|Caenorhabditis elegans Hypothetical
protein T24B8.6 protein.
Length = 203
Score = 35.5 bits (78), Expect = 0.068
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 140 GPNKKLSKVETLRMAVEYIRNLESLLNIGHADKENTSRSCMESFPSPASS 189
G KLSKVETLR A YI+ L+ L + N S FP+P S
Sbjct: 91 GNKAKLSKVETLREAARYIQELQKQLGMSSTSFHN---SMPADFPTPEQS 137
>U78953-1|AAB38323.1| 185|Caenorhabditis elegans basic
helix-loop-helix DNA bindingprotein HLH-3 protein.
Length = 185
Score = 35.5 bits (78), Expect = 0.068
Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 140 GPNKKLSKVETLRMAVEYIRNLESLLNIGHADKENTSRSCMESFPSPASS 189
G KLSKVETLR A YI+ L+ L + N S FP+P S
Sbjct: 58 GNKAKLSKVETLREAARYIQELQKQLGMSSTSFHN---SMPADFPTPEQS 104
>U00043-11|AAN65290.1| 641|Caenorhabditis elegans Hypothetical
protein T26A5.2b protein.
Length = 641
Score = 33.5 bits (73), Expect = 0.27
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 315 NQHIQQSFNENTDIPFALNPDLILPENQFKFKESDNSSFTENEDFCEVELKKELPDIQVT 374
+Q QS + D+ N L PE Q K K++ + E +C +L+K+L D T
Sbjct: 394 SQREVQSSTKKPDVKVEKNVKLEAPEKQNKRKDT---ALNPKEKYCAQKLEKQLNDQTKT 450
Query: 375 PEDREQFEETLKWWQEKTRQ 394
P+ + + E + +E T++
Sbjct: 451 PKQKPKQETSAGIKRESTQR 470
>U00043-10|AAC77505.1| 779|Caenorhabditis elegans Hypothetical
protein T26A5.2a protein.
Length = 779
Score = 33.5 bits (73), Expect = 0.27
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 315 NQHIQQSFNENTDIPFALNPDLILPENQFKFKESDNSSFTENEDFCEVELKKELPDIQVT 374
+Q QS + D+ N L PE Q K K++ + E +C +L+K+L D T
Sbjct: 532 SQREVQSSTKKPDVKVEKNVKLEAPEKQNKRKDT---ALNPKEKYCAQKLEKQLNDQTKT 588
Query: 375 PEDREQFEETLKWWQEKTRQ 394
P+ + + E + +E T++
Sbjct: 589 PKQKPKQETSAGIKRESTQR 608
>Z83103-9|CAI79157.1| 376|Caenorhabditis elegans Hypothetical
protein D1025.10 protein.
Length = 376
Score = 33.1 bits (72), Expect = 0.36
Identities = 28/116 (24%), Positives = 47/116 (40%), Gaps = 3/116 (2%)
Query: 286 SVIPEQNYLSETEVPVSESDFEIKYADSLNQHIQQSFNENTDIPFALNPDLILPENQFKF 345
S Q+ + E EVP E + + + ++ D P D+ E+
Sbjct: 68 SSFSSQSKMKEPEVPEREPSTPNNSRSNWRSDMDEELTDDEDTPTPEVIDVSSDESMADV 127
Query: 346 KESDNSSFTENEDFCEVELKKELPDIQVTPEDREQFEETLKWWQEKTRQTRPTKTL 401
E N E E+ E ++E+ ++ ED E+ EE +K E+ R+ P K L
Sbjct: 128 MEEINQEVEEEEEGEAEEGQEEV--VEEVEEDEEEVEE-IKEKVEEVREVTPPKDL 180
>U28944-18|AAA68375.2| 246|Caenorhabditis elegans Helix loop helix
protein 14 protein.
Length = 246
Score = 32.3 bits (70), Expect = 0.63
Identities = 15/24 (62%), Positives = 19/24 (79%)
Query: 143 KKLSKVETLRMAVEYIRNLESLLN 166
KK SK +TLR AV+YI+ L+ LLN
Sbjct: 136 KKWSKADTLREAVKYIQQLQVLLN 159
>AF125972-1|AAD14770.2| 349|Caenorhabditis elegans Hypothetical
protein H25P19.1 protein.
Length = 349
Score = 32.3 bits (70), Expect = 0.63
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 350 NSSFTENEDFCEVELKKELPDIQVTPEDREQFEETLK------WWQEKTRQTRPTKTLNK 403
N + E C + E PD VTPED+++ EE +K + Q+ +QTR K ++
Sbjct: 168 NFYYKEKNKLCG-NWRLETPDRLVTPEDKQRLEEKMKASNITIYQQDPKKQTRAQKAMST 226
Query: 404 K 404
+
Sbjct: 227 R 227
>AC024859-13|AAK29965.2| 338|Caenorhabditis elegans Hypothetical
protein Y71H2AM.17 protein.
Length = 338
Score = 31.9 bits (69), Expect = 0.83
Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 3/36 (8%)
Query: 356 NEDFCEVELKKELPDIQVTPEDREQFEETLKWWQEK 391
++DF E +LKK + + V D E+FEET+K W+EK
Sbjct: 215 SDDFQE-QLKKAVSEKPVV--DEEKFEETVKEWEEK 247
>U58739-3|AAB00609.1| 237|Caenorhabditis elegans Hypothetical
protein F28C10.2 protein.
Length = 237
Score = 31.5 bits (68), Expect = 1.1
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 3/119 (2%)
Query: 258 SSDLLVQDEVNSHILDAHFQFPNSAEHFSVIPEQNYLSETEVPVSESDFEIKYADSLNQH 317
+S L ++D+ + H F + F+ + E+N S V+ ++ Y + L+
Sbjct: 49 ASTLAMKDQFDKHNRAKARYFHEDEKVFAKVYERNSWSWKPGKVANKQGKVVYVNILDDG 108
Query: 318 IQQSFNENTDIPFALNPDLILPENQFKFKESDNSSFT--ENEDFCEVELKKELPDIQVT 374
+++ + N P + + N +K SD S +NED+ +E K +LP I T
Sbjct: 109 RERAVHANQLKPRVDEKETVRV-NAWKDTMSDTSELLPYDNEDYEVIERKTKLPTIMPT 166
>Z69787-9|CAA93634.1| 226|Caenorhabditis elegans Hypothetical
protein C44C10.8 protein.
Length = 226
Score = 30.7 bits (66), Expect = 1.9
Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 143 KKLSKVETLRMAVEYIRNLESLLNIGHADKENTSRSCMESFP 184
K L K++TLR+A++YI +L+ LL E C ES P
Sbjct: 59 KSLPKIKTLRLAMQYIDHLKKLL----GGNEMLETDCNESRP 96
>Z54238-2|CAA90994.1| 200|Caenorhabditis elegans Hypothetical
protein T28C6.3 protein.
Length = 200
Score = 30.7 bits (66), Expect = 1.9
Identities = 36/137 (26%), Positives = 66/137 (48%), Gaps = 16/137 (11%)
Query: 259 SDLLVQDEVNSHILDAHFQFPNSAEHFSV---IPEQ-NYLSETEVPVSES-DFEIKYADS 313
S+ +++ N + A + N A F++ I E+ L + +V + E+ D E+K+ D+
Sbjct: 5 SETAIKNNNNQELGGATKRNENDATTFTMPIGIQEKLEILKKQDVQLQEALDMELKFLDT 64
Query: 314 LNQ------HIQQSFNENTDIPFALN-PDLILPENQFKFKESDNSSFTENEDFCEVELKK 366
+ H Q F++ FA + +L E++ ESD +E+ED E K
Sbjct: 65 NEKLFVKTLHDAQKFHQEPTTSFADELEESVLCESE---SESDALDESESEDSVVNEYVK 121
Query: 367 ELPDIQVTPEDREQFEE 383
E D + ED+E++E+
Sbjct: 122 ESDD-EEDDEDKEEYED 137
>Z81523-2|CAB04248.1| 928|Caenorhabditis elegans Hypothetical
protein F32H2.1b protein.
Length = 928
Score = 30.3 bits (65), Expect = 2.5
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 136 NSNRGPNKKLSKVETLRMAVEYIRNLESLLNIGHADKENTSRSCMESFPSPASSSPRENS 195
N N+++ K++ LR + +++ LN+G TS CME + + S +E S
Sbjct: 249 NKEHWSNEEVEKLKYLRESPKFVSWPMLALNLG---TNRTSYQCMEKYKTEVSQHSKEWS 305
Query: 196 QERSYFMIS 204
Q+ +I+
Sbjct: 306 QDEDTKLIA 314
>Z81523-1|CAB04241.1| 944|Caenorhabditis elegans Hypothetical
protein F32H2.1a protein.
Length = 944
Score = 30.3 bits (65), Expect = 2.5
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 136 NSNRGPNKKLSKVETLRMAVEYIRNLESLLNIGHADKENTSRSCMESFPSPASSSPRENS 195
N N+++ K++ LR + +++ LN+G TS CME + + S +E S
Sbjct: 249 NKEHWSNEEVEKLKYLRESPKFVSWPMLALNLG---TNRTSYQCMEKYKTEVSQHSKEWS 305
Query: 196 QERSYFMIS 204
Q+ +I+
Sbjct: 306 QDEDTKLIA 314
>U50199-4|AAA91264.2| 142|Caenorhabditis elegans Abnormal cell
lineage protein 32 protein.
Length = 142
Score = 30.3 bits (65), Expect = 2.5
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 143 KKLSKVETLRMAVEYIRNLESLLNIGHADKENTSRS 178
KKLSK ETL+MA +YI L +L ++ S+S
Sbjct: 106 KKLSKFETLQMAQKYIECLSQILKQDSKNENLKSKS 141
>U15418-1|AAA67360.1| 71|Caenorhabditis elegans LIN-32 protein.
Length = 71
Score = 30.3 bits (65), Expect = 2.5
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 143 KKLSKVETLRMAVEYIRNLESLLNIGHADKENTSRS 178
KKLSK ETL+MA +YI L +L ++ S+S
Sbjct: 35 KKLSKFETLQMAQKYIECLSQILKQDSKNENLKSKS 70
>U51999-7|AAA96089.1| 89|Caenorhabditis elegans Helix loop helix
protein 15 protein.
Length = 89
Score = 29.9 bits (64), Expect = 3.4
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 143 KKLSKVETLRMAVEYIRNLESLL 165
KKLSK+E LR ++ YI L++LL
Sbjct: 66 KKLSKIEILRFSIAYISFLDNLL 88
>AF099925-14|AAX55690.1| 679|Caenorhabditis elegans Calcium binding
protein homologprotein 1, isoform d protein.
Length = 679
Score = 29.9 bits (64), Expect = 3.4
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 30 ITNNDPNQNVRREIIVLRKKQRIQPADTVSVPALMRTIEPSSSSVLAKKARYRENTSSDE 89
I N+ Q++ RE++ K + + + T PS+ S KK + T S
Sbjct: 534 IANDVIAQDILREVVA--PKATVLKTTVPTTTVIQTTETPSTKSKTTKKVKVTTTTVSTT 591
Query: 90 TVRTPTP 96
T+ T TP
Sbjct: 592 TITTSTP 598
>Z66494-2|CAA91257.1| 821|Caenorhabditis elegans Hypothetical
protein C34C6.2 protein.
Length = 821
Score = 29.5 bits (63), Expect = 4.5
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 46 LRKKQRIQPADTVSVPALMRTIEPSSSSVLAKKARYRENTSSDETVRT-PTP 96
+R+ QRI + S RT+ + S ++ ++RY E TSS T ++ P P
Sbjct: 526 IRRDQRIMSVNDRSRDPSHRTVSVTDSVNISNQSRYSEQTSSTLTYKSAPIP 577
>U64835-5|AAG24196.1| 592|Caenorhabditis elegans Hypothetical
protein T09D3.3 protein.
Length = 592
Score = 29.5 bits (63), Expect = 4.5
Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 15/112 (13%)
Query: 240 LVSTPHLYDEEEGQPL----TPSSDLLVQDEVNSHILDAHFQFPNSA-------EHFSVI 288
L+ P Y E QP+ T + +L S I +HF N +H+
Sbjct: 87 LIIKPVTYSETSYQPIDIYSTTQTPILTTPPYPSRI--SHFPTENRQIFRSPVRQHYQPS 144
Query: 289 PEQNYLSETEVPVSESD-FEIKYADSLNQHIQQSFNENTDIPFALNPDLILP 339
P L ETEVPVS+S + L H+ Q+F + + LNP L P
Sbjct: 145 PNFPRLLETEVPVSQSSPMFTSNSSLLPPHMSQNFGSSI-LTQLLNPILQEP 195
>U40421-1|AAA81437.2| 178|Caenorhabditis elegans Helix loop helix
protein 8 protein.
Length = 178
Score = 29.5 bits (63), Expect = 4.5
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 141 PNKKLSKVETLRMAVEYIRNLESLLNIG 168
P+ K+SK+ TLR+A +YI L+ + G
Sbjct: 51 PSDKMSKIHTLRIATDYISFLDEMQKNG 78
>U10402-7|AAA19069.1| 192|Caenorhabditis elegans C. elegans neuro d
homolog protein1 protein.
Length = 192
Score = 29.5 bits (63), Expect = 4.5
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 142 NKKLSKVETLRMAVEYIRNLESLL 165
++KLSK+ETLR+A YI L+ +L
Sbjct: 52 HQKLSKIETLRLARNYIDALQRML 75
>AF037063-1|AAC26105.1| 178|Caenorhabditis elegans twist protein.
Length = 178
Score = 29.5 bits (63), Expect = 4.5
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 141 PNKKLSKVETLRMAVEYIRNLESLLNIG 168
P+ K+SK+ TLR+A +YI L+ + G
Sbjct: 51 PSDKMSKIHTLRIATDYISFLDEMQKNG 78
>AC084158-30|AAK68574.1| 184|Caenorhabditis elegans Neurogenin
protein 1 protein.
Length = 184
Score = 29.5 bits (63), Expect = 4.5
Identities = 14/28 (50%), Positives = 19/28 (67%)
Query: 144 KLSKVETLRMAVEYIRNLESLLNIGHAD 171
K++K+ETLR A EYI +L L+ G D
Sbjct: 97 KMTKIETLRKAQEYIASLSFQLSGGSPD 124
>Z70205-5|CAA94115.2| 528|Caenorhabditis elegans Hypothetical
protein C11H1.5 protein.
Length = 528
Score = 29.1 bits (62), Expect = 5.9
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 142 NKKLSKVETLRMAVEYIRNLESLLNIGHADKENTSRSCMESFPSPASSS 190
N+KLSK+ V+ R +SL+N G+ NT+ + ++ +P ++ S
Sbjct: 287 NRKLSKI-----LVDAYRQRQSLMNSGYLSPSNTAPTVIKPYPPSSTES 330
>U58732-4|AAB00595.1| 147|Caenorhabditis elegans Helix loop helix
protein 13 protein.
Length = 147
Score = 29.1 bits (62), Expect = 5.9
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 143 KKLSKVETLRMAVEYIRNLESLL 165
K+LSK++TL +A+ YI L+ +L
Sbjct: 75 KRLSKIDTLNLAIAYINMLDDVL 97
>AF369899-1|AAK72958.1| 147|Caenorhabditis elegans Fer3-like
protein.
Length = 147
Score = 29.1 bits (62), Expect = 5.9
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 143 KKLSKVETLRMAVEYIRNLESLL 165
K+LSK++TL +A+ YI L+ +L
Sbjct: 75 KRLSKIDTLNLAIAYINMLDDVL 97
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.311 0.127 0.351
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,855,860
Number of Sequences: 27539
Number of extensions: 431682
Number of successful extensions: 1247
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1227
Number of HSP's gapped (non-prelim): 32
length of query: 404
length of database: 12,573,161
effective HSP length: 83
effective length of query: 321
effective length of database: 10,287,424
effective search space: 3302263104
effective search space used: 3302263104
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 61 (28.7 bits)
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