GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001002-TA|BGIBMGA001002-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH, IPR011598|Helix-loop-helix
DNA-binding
         (404 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      33   0.003
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    25   0.87 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   1.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   8.1  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   8.1  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   8.1  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 33.5 bits (73), Expect = 0.003
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 141 PNKKLSKVETLRMAVEYIRNLESLLNIGHADKENTSRSCMESFPSPASS 189
           P+ KLSK++TL++A  YI   + L  + H + ENT  +   S  +P S+
Sbjct: 284 PSDKLSKIQTLKLATRYI---DFLFQVLHCNMENTEGADDASERNPRSA 329


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 25.4 bits (53), Expect = 0.87
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 135 TNSNRGPNKKLSKVETLRMAVEYIRNLES 163
           T    GP+KKL+K    + A+  +RN+ S
Sbjct: 192 TFEGTGPSKKLAKAAASKAALAKLRNVHS 220


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 185 SPASSSPRENSQERSYFMISSPAXXXXXXXXXXIDGLPGLRQQQYVDIAASE 236
           SPASS PR  S   +    +SP           + G P    +  VDIA S+
Sbjct: 822 SPASS-PRYLSAAATSSTSTSPRPASSTAATLVLSGCPSNMMELQVDIADSQ 872


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 8.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 143 KKLSKVETLRMAVEYIRNL 161
           KK + VETL +  E+I+N+
Sbjct: 75  KKRTGVETLSVGSEFIKNI 93


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 8.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 143 KKLSKVETLRMAVEYIRNL 161
           KK + VETL +  E+I+N+
Sbjct: 75  KKRTGVETLSVGSEFIKNI 93


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 8.1
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 143 KKLSKVETLRMAVEYIRNL 161
           KK + VETL +  E+I+N+
Sbjct: 14  KKRTGVETLSVGSEFIKNI 32


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.127    0.351 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,989
Number of Sequences: 429
Number of extensions: 4747
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 6
length of query: 404
length of database: 140,377
effective HSP length: 59
effective length of query: 345
effective length of database: 115,066
effective search space: 39697770
effective search space used: 39697770
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 45 (22.2 bits)