GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001001-TA|BGIBMGA001001-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH, IPR011598|Helix-loop-helix
DNA-binding
         (193 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    28   0.78 
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    25   7.3  
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po...    25   9.6  

>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 16/31 (51%), Positives = 21/31 (67%), Gaps = 4/31 (12%)

Query: 96  SRKLSKVDTLRLAVEYIKSL----KRLLDES 122
           SRKL+K   L  A EYIKSL    K+L++E+
Sbjct: 476 SRKLNKATILSKATEYIKSLQSKNKKLIEEN 506


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 75  AALRQHIPSAVTAALAGGRGSSRKLSKV--DTLRLAVEY--IKSLKRLLDESDDG 125
           +A+   I   V  A  G   SS+   ++    L+ A +Y  + SLKR+++E+D+G
Sbjct: 223 SAVLYSIVEVVCRAKFGLVASSQSAQQIVEKLLKTATKYEALNSLKRIMEETDEG 277


>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 449

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)

Query: 15  DQKLTHLQTPAPRRLAPAPVDTTRCKKRSYLHQPYPTQ 52
           D+++  + T  P +L PA V   R   ++YL    P Q
Sbjct: 338 DERIIFMTTNHPEKLDPALVRPGRVDVKAYLGNATPEQ 375


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.129    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 787,816
Number of Sequences: 5004
Number of extensions: 25692
Number of successful extensions: 31
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 3
length of query: 193
length of database: 2,362,478
effective HSP length: 69
effective length of query: 124
effective length of database: 2,017,202
effective search space: 250133048
effective search space used: 250133048
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 51 (24.6 bits)