GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001001-TA|BGIBMGA001001-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH, IPR011598|Helix-loop-helix
DNA-binding
         (193 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0864 + 6567619-6567729,6567984-6568136                           30   1.4  
02_05_0745 - 31442980-31443135,31443362-31443472                       28   4.2  
05_01_0437 + 3471154-3471447,3471664-3471858,3472619-3472741,347...    27   7.4  
03_01_0451 + 3461229-3461561,3462043-3462290,3462425-3462716,346...    27   7.4  
03_01_0232 + 1824517-1825506                                           27   7.4  
12_01_0026 + 219663-220843,222201-222447,222574-224535                 27   9.8  
02_01_0745 - 5550472-5551053                                           27   9.8  

>06_01_0864 + 6567619-6567729,6567984-6568136
          Length = 87

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 93  RGSSRKLSKVDTLRLAVEYIKSLKRLLDESDDGCSDTQLGLGLSTTGSQ 141
           R  + + S    L+    YIKSL R +D+  D  SD   G+  ++ G++
Sbjct: 32  RRGANQASTTKLLKETCSYIKSLHREVDDLSDRLSDLMAGMDHNSPGAE 80


>02_05_0745 - 31442980-31443135,31443362-31443472
          Length = 88

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 93  RGSSRKLSKVDTLRLAVEYIKSLKRLLDESDDGCSDTQLGLGLSTTGSQ 141
           RGSS+  S    L+    YIKSL R +D+  D  SD    +  ++ G++
Sbjct: 33  RGSSQA-STTKLLKETCNYIKSLHREVDDLSDRLSDLMATMDHNSPGAE 80


>05_01_0437 +
           3471154-3471447,3471664-3471858,3472619-3472741,
           3473245-3473430,3473633-3473766,3473866-3474052,
           3474179-3474280
          Length = 406

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/39 (38%), Positives = 20/39 (51%)

Query: 83  SAVTAALAGGRGSSRKLSKVDTLRLAVEYIKSLKRLLDE 121
           S+  AA  GG G S   + VD L   V  +  LKR ++E
Sbjct: 63  SSAAAAPGGGGGGSGDAAAVDHLTSLVSRLHGLKRKMEE 101


>03_01_0451 +
          3461229-3461561,3462043-3462290,3462425-3462716,
          3463057-3463209,3463288-3463674
          Length = 470

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 21 LQTPAPRRLAPAPVDTTRCKKRSYLHQPYP 50
          LQT  PR + P P+   R  +   LH+P P
Sbjct: 3  LQTLNPRHVLPLPLPRRRAPRPRVLHRPPP 32


>03_01_0232 + 1824517-1825506
          Length = 329

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 20/90 (22%), Positives = 32/90 (35%)

Query: 75  AALRQHIPSAVTAALAGGRGSSRKLSKVDTLRLAVEYIKSLKRLLDESDDGCSDTQLGLG 134
           AALR+   + + AAL   R S R LS++ +    + Y  S      +S +      +G  
Sbjct: 143 AALRRRDATRLAAALRARRRSDRDLSRLASTLRDLSYRSSSAAATSDSGEAALAEAVGAA 202

Query: 135 LSTTGSQTXXXXXXXXXXXXXFVSESSAGP 164
                + +               S S A P
Sbjct: 203 TCAAAAASASFFAGLASASASSASRSLASP 232


>12_01_0026 + 219663-220843,222201-222447,222574-224535
          Length = 1129

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 16/40 (40%), Positives = 20/40 (50%)

Query: 79  QHIPSAVTAALAGGRGSSRKLSKVDTLRLAVEYIKSLKRL 118
           +H  + + A+L  G  S RKLS  D      E   SLKRL
Sbjct: 928 RHFLTKIQASLCSGSISKRKLSMSDDQEKLQESPSSLKRL 967


>02_01_0745 - 5550472-5551053
          Length = 193

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 9/19 (47%), Positives = 15/19 (78%)

Query: 168 DVYDAYEPMSPEDEELLDV 186
           +VYD Y PMSP  ++++D+
Sbjct: 46  EVYDPYGPMSPPSQKVVDL 64


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.129    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,497,636
Number of Sequences: 37544
Number of extensions: 202353
Number of successful extensions: 430
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 423
Number of HSP's gapped (non-prelim): 7
length of query: 193
length of database: 14,793,348
effective HSP length: 78
effective length of query: 115
effective length of database: 11,864,916
effective search space: 1364465340
effective search space used: 1364465340
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 57 (27.1 bits)