Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001001-TA|BGIBMGA001001-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH, IPR011598|Helix-loop-helix
DNA-binding
(193 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27345| Best HMM Match : HLH (HMM E-Value=1.2e-20) 53 2e-07
SB_32910| Best HMM Match : No HMM Matches (HMM E-Value=.) 47 9e-06
SB_43185| Best HMM Match : HLH (HMM E-Value=4e-20) 47 1e-05
SB_535| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_35548| Best HMM Match : BPL_LipA_LipB (HMM E-Value=1.5e-27) 44 1e-04
SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_56922| Best HMM Match : HLH (HMM E-Value=1.9e-21) 42 4e-04
SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12) 39 0.003
SB_37377| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.029
SB_52528| Best HMM Match : HLH (HMM E-Value=3.9e-18) 36 0.029
SB_47522| Best HMM Match : HLH (HMM E-Value=1e-17) 35 0.038
SB_30517| Best HMM Match : HLH (HMM E-Value=6.9e-15) 34 0.066
SB_56921| Best HMM Match : HLH (HMM E-Value=9.9e-19) 34 0.088
SB_12347| Best HMM Match : HLH (HMM E-Value=3.8e-21) 33 0.12
SB_9126| Best HMM Match : HLH (HMM E-Value=2.5e-18) 33 0.15
SB_6246| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.15
SB_28433| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.47
SB_12656| Best HMM Match : CS (HMM E-Value=0.0018) 31 0.82
SB_46206| Best HMM Match : HLH (HMM E-Value=5e-18) 29 2.5
SB_39365| Best HMM Match : HLH (HMM E-Value=5.5e-07) 29 3.3
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.4
SB_77| Best HMM Match : cNMP_binding (HMM E-Value=0.0097) 28 4.4
SB_33048| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_25064| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.8
SB_21015| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.6
>SB_27345| Best HMM Match : HLH (HMM E-Value=1.2e-20)
Length = 153
Score = 52.8 bits (121), Expect = 2e-07
Identities = 28/56 (50%), Positives = 41/56 (73%), Gaps = 9/56 (16%)
Query: 68 KQVNNGFAALRQHIPSAVTAALAGGRGSSRKLSKVDTLRLAVEYIKSLKRLLDESD 123
K V++GFAALR+HIP+ ++KLSKV+TLR A+EYIK L+R+L++S+
Sbjct: 85 KLVSDGFAALRKHIPTTPV---------NKKLSKVETLRTAIEYIKHLQRILNDSN 131
>SB_32910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 155
Score = 47.2 bits (107), Expect = 9e-06
Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 9/54 (16%)
Query: 70 VNNGFAALRQHIPSAVTAALAGGRGSSRKLSKVDTLRLAVEYIKSLKRLLDESD 123
VN+GF++LRQHIP +KLSKV+TLR AV YIK L+ L++E D
Sbjct: 86 VNDGFSSLRQHIPYFP---------EKKKLSKVETLRCAVAYIKHLQSLIEEYD 130
>SB_43185| Best HMM Match : HLH (HMM E-Value=4e-20)
Length = 232
Score = 46.8 bits (106), Expect = 1e-05
Identities = 35/123 (28%), Positives = 59/123 (47%), Gaps = 12/123 (9%)
Query: 1 MPMAAIHGYQNLGVDQKLTHLQTPAPRRLAPAPVDTTRCKKRSYLHQPYPTQPASXXXXX 60
+P ++I Y +L D ++ + P PV + ++R + +PA
Sbjct: 14 IPASSIR-YTSLSEDDS-AEVRPATKFAMVPTPV-LGQTRRRRAVSTAKQKEPAVVARRN 70
Query: 61 XXXXXXXKQVNNGFAALRQHIPSAVTAALAGGRGSSRKLSKVDTLRLAVEYIKSLKRLLD 120
K VN+GF LR+H+P+ ++KLSKV TLR A+EYI+ L+ LL
Sbjct: 71 ARERKRVKLVNDGFMRLRKHVPTDP---------KNKKLSKVKTLRSAIEYIRHLQHLLG 121
Query: 121 ESD 123
+++
Sbjct: 122 QAN 124
>SB_535| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 46.0 bits (104), Expect = 2e-05
Identities = 27/80 (33%), Positives = 39/80 (48%), Gaps = 9/80 (11%)
Query: 49 YPTQPASXXXXXXXXXXXXKQVNNGFAALRQHIPSAVTAALAGGRGSSRKLSKVDTLRLA 108
Y +PA + VN G+A LR+H+P S +++SKV+TLR A
Sbjct: 48 YNLEPAFIRKRNERERIRVRHVNEGYARLREHLPE---------EPSDKRMSKVETLRAA 98
Query: 109 VEYIKSLKRLLDESDDGCSD 128
+ YIK L+ LL G S+
Sbjct: 99 IRYIKHLESLLQAEAAGSSE 118
>SB_35548| Best HMM Match : BPL_LipA_LipB (HMM E-Value=1.5e-27)
Length = 378
Score = 43.6 bits (98), Expect = 1e-04
Identities = 22/60 (36%), Positives = 37/60 (61%), Gaps = 5/60 (8%)
Query: 69 QVNNGFAALRQHIPSAVTAALAGGRGSSRKLSKVDTLRLAVEYIKSLKRLLDESDDGCSD 128
++N+ F LR IP ++ G+G RKL++++TLRLA YI +L +L++ + SD
Sbjct: 308 RLNSAFDVLRGVIPDYLS-----GKGPERKLTQIETLRLATHYIMALSEMLEDENQKSSD 362
>SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 41.9 bits (94), Expect = 3e-04
Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 19/107 (17%)
Query: 68 KQVNNGFAALRQHIPSAVTAALAGGRGSSRKLSKVDTLRLAVEYIKSLKRLLDESDDG-- 125
+ +++ LR H+P V A +KLSK+ TLRLA+ YI L +L +SDDG
Sbjct: 51 RSISDALLHLRYHLPQTVVA-------KDKKLSKIQTLRLAIRYISDLFEIL-QSDDGQG 102
Query: 126 --------CSDTQLGLGLSTTG-SQTXXXXXXXXXXXXXFVSESSAG 163
C++ G L T+ + T F S+SSAG
Sbjct: 103 INISNGQLCAEYLDGNDLLTSSENSTTSTSCMFAQEQQDFASDSSAG 149
>SB_56922| Best HMM Match : HLH (HMM E-Value=1.9e-21)
Length = 157
Score = 41.5 bits (93), Expect = 4e-04
Identities = 24/56 (42%), Positives = 31/56 (55%), Gaps = 9/56 (16%)
Query: 70 VNNGFAALRQHIPSAVTAALAGGRGSSRKLSKVDTLRLAVEYIKSLKRLLDESDDG 125
+N F LR HIP+ KLSK+ TLRLA+ YI+ L +L+ES DG
Sbjct: 47 MNTAFEDLRNHIPNVPP---------DTKLSKIKTLRLAISYIRYLMDILEESKDG 93
>SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)
Length = 1650
Score = 38.7 bits (86), Expect = 0.003
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 71 NNGFAALRQHIPSAVTAALAGGRGSSRKLSKVDTLRLAVEYIKSLKRLLDESDDGCSDT 129
N F ALR+ S A G SR+L+K++TLRLA+EYIK L + L+E DT
Sbjct: 86 NKAFDALRE---SLYNFAKTG----SRRLTKLETLRLAIEYIKELTQSLNEEAMSGQDT 137
>SB_37377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 35.5 bits (78), Expect = 0.029
Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 9/53 (16%)
Query: 68 KQVNNGFAALRQHIPSAVTAALAGGRGSSRKLSKVDTLRLAVEYIKSLKRLLD 120
+ +N F LR+HIP+ ++LSKVDTLRLA+ YI L +++
Sbjct: 57 QSINEAFEGLRKHIPTLPY---------EKRLSKVDTLRLAIGYIGFLTEMIN 100
>SB_52528| Best HMM Match : HLH (HMM E-Value=3.9e-18)
Length = 138
Score = 35.5 bits (78), Expect = 0.029
Identities = 22/52 (42%), Positives = 28/52 (53%), Gaps = 9/52 (17%)
Query: 68 KQVNNGFAALRQHIPSAVTAALAGGRGSSRKLSKVDTLRLAVEYIKSLKRLL 119
+QVN F LR IP R +K SK+DT+RLA YI+ L +LL
Sbjct: 49 QQVNAAFETLRNKIPL---------RALEKKPSKIDTIRLATRYIQDLTQLL 91
>SB_47522| Best HMM Match : HLH (HMM E-Value=1e-17)
Length = 213
Score = 35.1 bits (77), Expect = 0.038
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 39 CKKRSYLHQPYPTQPASXXXXXXXXXXXXKQVNNGFAALRQHIPSAVTAALAGGRGSSRK 98
C K S+ H+ Y ++ +N+ F +LR+ IP K
Sbjct: 52 CFKSSHRHKKYAHLRSNRECATARERSRMHSLNDAFDSLRKAIPKT-------NYNQEEK 104
Query: 99 LSKVDTLRLAVEYIKSLKRLL 119
SK+ TLRLA+ YI +L +L
Sbjct: 105 PSKIATLRLAIHYIAALSDIL 125
>SB_30517| Best HMM Match : HLH (HMM E-Value=6.9e-15)
Length = 178
Score = 34.3 bits (75), Expect = 0.066
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 10/57 (17%)
Query: 70 VNNGFAALRQHIPSAVTAALAGGRGSSRKLSKVDTLRLAVEYIKSLKRLL-DESDDG 125
+NN F +LR +P + A G ++K+ TLRLA+ YIK+L +L DES G
Sbjct: 103 LNNAFQSLRDALPCYI----ADGH-----MAKITTLRLAINYIKALTDVLRDESSTG 150
>SB_56921| Best HMM Match : HLH (HMM E-Value=9.9e-19)
Length = 200
Score = 33.9 bits (74), Expect = 0.088
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 9/49 (18%)
Query: 68 KQVNNGFAALRQHIPSAVTAALAGGRGSSRKLSKVDTLRLAVEYIKSLK 116
+ +N FA LR+HIP+ S KLSK+ TL+LA+ YI L+
Sbjct: 54 ENINAAFAELRKHIPNVP---------SDTKLSKIKTLQLAMSYIHHLE 93
>SB_12347| Best HMM Match : HLH (HMM E-Value=3.8e-21)
Length = 143
Score = 33.5 bits (73), Expect = 0.12
Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 9/50 (18%)
Query: 70 VNNGFAALRQHIPSAVTAALAGGRGSSRKLSKVDTLRLAVEYIKSLKRLL 119
VN F ALR IP+ S RKLSK++TLRLA YI L +L
Sbjct: 66 VNAAFNALRLLIPT---------EPSDRKLSKIETLRLASSYIAHLSTIL 106
>SB_9126| Best HMM Match : HLH (HMM E-Value=2.5e-18)
Length = 179
Score = 33.1 bits (72), Expect = 0.15
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 97 RKLSKVDTLRLAVEYIKSLKRLLDESDDGCSDTQLGLGLSTTGSQ 141
+KLSK++ LRLA++YI L L+ S +Q L S GSQ
Sbjct: 73 QKLSKIEVLRLAIDYIAMLSCYLNNSQSAAVCSQPALSAS-IGSQ 116
>SB_6246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 33.1 bits (72), Expect = 0.15
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 95 SSRKLSKVDTLRLAVEYIKSLKRLLDESDD 124
SS KL+K+DTL LA +YIK L +L + D
Sbjct: 93 SSGKLTKLDTLLLARDYIKHLNEILQRTRD 122
>SB_28433| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 536
Score = 31.5 bits (68), Expect = 0.47
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 97 RKLSKVDTLRLAVEYIKSLKRLLDESDDG 125
+KLSKV+ LR AV+YI+ L +L+ DG
Sbjct: 472 KKLSKVEILRTAVKYIQFLDGVLEGMGDG 500
>SB_12656| Best HMM Match : CS (HMM E-Value=0.0018)
Length = 277
Score = 30.7 bits (66), Expect = 0.82
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 24 PAPRRLAPAPVDTTRCKKRSYLHQPYPTQPA 54
P+P L P+P+ T Y+H P+P P+
Sbjct: 152 PSPFPLHPSPLPATSIPPSRYIHPPFPLHPS 182
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 20 HLQTPAPR-RLAPAPVDTTRCKKRSYLHQPYPTQPA 54
HL +P PR L P+P+ T Y+H P+P P+
Sbjct: 75 HL-SPNPRPTLHPSPLPATSIPPSRYIHLPFPLHPS 109
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 20 HLQTPAPRRLAPAPVDTTRCKKRSYLHQPYPTQPA 54
++ P+P L P+P+ T Y+H P+P P+
Sbjct: 121 YIHPPSP--LHPSPLPATSIPPSRYIHLPFPIHPS 153
Score = 27.5 bits (58), Expect = 7.6
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 26 PRRLAPAPVDTTRCKKRSYLHQPYPTQPA 54
P L P+P+ T Y+H P+P P+
Sbjct: 176 PFPLHPSPLPATSIPPSRYIHPPFPLHPS 204
>SB_46206| Best HMM Match : HLH (HMM E-Value=5e-18)
Length = 400
Score = 29.1 bits (62), Expect = 2.5
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 95 SSRKLSKVDTLRLAVEYIKSLKRLLDESDDGCS 127
S R+++K++ LR+A YIKSL L G S
Sbjct: 335 SKRRVTKLEILRIACNYIKSLSDTLRGESSGPS 367
>SB_39365| Best HMM Match : HLH (HMM E-Value=5.5e-07)
Length = 105
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 96 SRKLSKVDTLRLAVEYIKSLKRLLDESDDGCSDTQ 130
+RKLSK L+ A+EYI+SL+ + + D S+T+
Sbjct: 68 NRKLSKNMILQTAIEYIRSLQEEFNITVDPQSNTE 102
>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3176
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
Query: 114 SLKRLLDESDDGCSDTQLGLGLSTTGSQTXXXXXXXXXXXXXFVSESSAGPNCHD----V 169
SL RL ++ + + L L + + S S SS P H+ +
Sbjct: 3100 SLSRLANQRNTAYPFSALSLSIGSASSSARSSPVHFNLGRAQSPSSSSLLPRSHEPVPIL 3159
Query: 170 YDAYEPMSPEDEE 182
D YEP+S +DE+
Sbjct: 3160 SDNYEPLSDDDED 3172
>SB_77| Best HMM Match : cNMP_binding (HMM E-Value=0.0097)
Length = 498
Score = 28.3 bits (60), Expect = 4.4
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 10/57 (17%)
Query: 5 AIHGYQNLGVDQKLTHLQTPAPRRLAPA-------PVDTTRCKKRSYLHQPYPTQPA 54
A+HG+ LG+ +L TP+ RR+ P+ PVDTT R L +P + A
Sbjct: 150 ALHGF--LGLSYELISSSTPSSRRIQPSGTTSRTRPVDTTE-SPRGALKKPQTLETA 203
>SB_33048| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 216
Score = 27.9 bits (59), Expect = 5.8
Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 2 PMAAIHGYQNLGVDQKLTHLQTPAPRRLAPA-PVDTTRCKKRSYLHQPYPTQPAS 55
P HG Q + THL+ AP P+ R HQ YP+ PAS
Sbjct: 42 PAILSHGEQRSSITH--THLRACLTGNSAPILPILNCELVSREIAHQYYPSSPAS 94
>SB_25064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1134
Score = 27.9 bits (59), Expect = 5.8
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 98 KLSKVDTLRLAVEYIKSLKRLLDESDDGCSDTQLGLG 134
K+S+ ++++L ++ +K K + DE + C D L G
Sbjct: 262 KVSEANSVKLEIQEMKFTKNVSDEEIEACGDIPLNPG 298
>SB_21015| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 50
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/39 (33%), Positives = 19/39 (48%)
Query: 102 VDTLRLAVEYIKSLKRLLDESDDGCSDTQLGLGLSTTGS 140
V+T+ L E K ++ E DD SD +G TT +
Sbjct: 5 VETITLGAEKRKMASKIYIEEDDNQSDIDVGFSFLTTSN 43
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.314 0.129 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,886,897
Number of Sequences: 59808
Number of extensions: 204659
Number of successful extensions: 370
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 340
Number of HSP's gapped (non-prelim): 29
length of query: 193
length of database: 16,821,457
effective HSP length: 78
effective length of query: 115
effective length of database: 12,156,433
effective search space: 1397989795
effective search space used: 1397989795
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 58 (27.5 bits)
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