GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001001-TA|BGIBMGA001001-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH, IPR011598|Helix-loop-helix
DNA-binding
         (193 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF395079-1|AAK97461.1|  371|Anopheles gambiae basic helix-loop-h...    93   4e-21

>AF395079-1|AAK97461.1|  371|Anopheles gambiae basic
           helix-loop-helix transcriptionfactor ASH protein.
          Length = 371

 Score = 93.5 bits (222), Expect = 4e-21
 Identities = 51/86 (59%), Positives = 59/86 (68%), Gaps = 3/86 (3%)

Query: 40  KKRSYLHQPY--PTQPASXXXXXXXXXXXXKQVNNGFAALRQHIPSAVTAALAGG-RGSS 96
           KK +Y   PY  P Q AS            KQVNNGFA LRQHIPS V  AL  G RG++
Sbjct: 85  KKYAYCGLPYATPQQSASVQRRNARERNRVKQVNNGFANLRQHIPSTVVTALTNGARGAN 144

Query: 97  RKLSKVDTLRLAVEYIKSLKRLLDES 122
           +KLSKVDTLRLAVEYI+SL+R+LDE+
Sbjct: 145 KKLSKVDTLRLAVEYIRSLQRMLDEN 170



 Score = 40.7 bits (91), Expect = 3e-05
 Identities = 15/19 (78%), Positives = 17/19 (89%)

Query: 175 PMSPEDEELLDVISWWQQQ 193
           P +P+DEELLD ISWWQQQ
Sbjct: 353 PQNPDDEELLDYISWWQQQ 371


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.314    0.129    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,849
Number of Sequences: 2123
Number of extensions: 6399
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 2
length of query: 193
length of database: 516,269
effective HSP length: 61
effective length of query: 132
effective length of database: 386,766
effective search space: 51053112
effective search space used: 51053112
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 46 (22.6 bits)