Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001001-TA|BGIBMGA001001-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH, IPR011598|Helix-loop-helix
DNA-binding
(193 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z47356-3|CAA87416.1| 268|Caenorhabditis elegans Hypothetical pr... 41 7e-04
Z68338-7|CAA92758.1| 203|Caenorhabditis elegans Hypothetical pr... 40 0.001
U78953-1|AAB38323.1| 185|Caenorhabditis elegans basic helix-loo... 40 0.001
Z69787-9|CAA93634.1| 226|Caenorhabditis elegans Hypothetical pr... 36 0.019
U41554-2|AAA83297.2| 111|Caenorhabditis elegans Helix loop heli... 35 0.033
U10402-7|AAA19069.1| 192|Caenorhabditis elegans C. elegans neur... 35 0.033
U28944-18|AAA68375.2| 246|Caenorhabditis elegans Helix loop hel... 34 0.057
Z27079-2|CAA81589.1| 205|Caenorhabditis elegans Hypothetical pr... 33 0.17
U58732-4|AAB00595.1| 147|Caenorhabditis elegans Helix loop heli... 32 0.23
AF369899-1|AAK72958.1| 147|Caenorhabditis elegans Fer3-like pro... 32 0.23
U40421-1|AAA81437.2| 178|Caenorhabditis elegans Helix loop heli... 31 0.53
AF037063-1|AAC26105.1| 178|Caenorhabditis elegans twist protein. 31 0.53
U39472-4|AAK31389.2| 319|Caenorhabditis elegans Helix loop heli... 30 1.2
U39472-3|AAN39683.1| 320|Caenorhabditis elegans Helix loop heli... 30 1.2
U39472-2|AAN39684.1| 324|Caenorhabditis elegans Helix loop heli... 30 1.2
M59940-2|AAA16290.1| 320|Caenorhabditis elegans CeMyoD, alterna... 30 1.2
M59940-1|AAA16289.1| 324|Caenorhabditis elegans CeMyoD protein. 30 1.2
U50199-4|AAA91264.2| 142|Caenorhabditis elegans Abnormal cell l... 29 1.6
U15418-1|AAA67360.1| 71|Caenorhabditis elegans LIN-32 protein. 29 1.6
AF025464-2|AAN84804.1| 496|Caenorhabditis elegans Prion-like-(q... 29 1.6
AF025464-1|AAN84805.1| 529|Caenorhabditis elegans Prion-like-(q... 29 1.6
Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical pr... 28 3.7
X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein ... 28 3.7
Z71180-3|CAA94892.2| 763|Caenorhabditis elegans Hypothetical pr... 27 8.6
AL021474-7|CAA16311.2| 763|Caenorhabditis elegans Hypothetical ... 27 8.6
>Z47356-3|CAA87416.1| 268|Caenorhabditis elegans Hypothetical
protein T15H9.3 protein.
Length = 268
Score = 40.7 bits (91), Expect = 7e-04
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 9/52 (17%)
Query: 68 KQVNNGFAALRQHIPSAVTAALAGGRGSSRKLSKVDTLRLAVEYIKSLKRLL 119
+ VN+G+ LR+H+P +++SKVDTLRLA+ YIK L LL
Sbjct: 187 RNVNDGYERLRKHLPVHF---------DEKRISKVDTLRLAIRYIKHLDNLL 229
>Z68338-7|CAA92758.1| 203|Caenorhabditis elegans Hypothetical
protein T24B8.6 protein.
Length = 203
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Query: 69 QVNNGFAALRQHIPSAVTAALAGGRGSSRKLSKVDTLRLAVEYIKSLKRLLDES 122
QVN GF L++ +P A G+ KLSKV+TLR A YI+ L++ L S
Sbjct: 74 QVNQGFVLLQERVPKAA--------GNKAKLSKVETLREAARYIQELQKQLGMS 119
>U78953-1|AAB38323.1| 185|Caenorhabditis elegans basic
helix-loop-helix DNA bindingprotein HLH-3 protein.
Length = 185
Score = 39.9 bits (89), Expect = 0.001
Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 8/54 (14%)
Query: 69 QVNNGFAALRQHIPSAVTAALAGGRGSSRKLSKVDTLRLAVEYIKSLKRLLDES 122
QVN GF L++ +P A G+ KLSKV+TLR A YI+ L++ L S
Sbjct: 41 QVNQGFVLLQERVPKAA--------GNKAKLSKVETLREAARYIQELQKQLGMS 86
>Z69787-9|CAA93634.1| 226|Caenorhabditis elegans Hypothetical
protein C44C10.8 protein.
Length = 226
Score = 35.9 bits (79), Expect = 0.019
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
Query: 70 VNNGFAALRQHIPSAVTAALAGGRGSSRKLSKVDTLRLAVEYIKSLKRLL 119
+N+ F L+QHIP + + L K+ TLRLA++YI LK+LL
Sbjct: 39 INSAFEILQQHIPYLKSE-------ERKSLPKIKTLRLAMQYIDHLKKLL 81
>U41554-2|AAA83297.2| 111|Caenorhabditis elegans Helix loop helix
protein 19 protein.
Length = 111
Score = 35.1 bits (77), Expect = 0.033
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 68 KQVNNGFAALRQHIPSAVTAALAGGRGSSRKLSKVDTLRLAVEYIKSLKRLLDESDDGCS 127
K + N F LR H+P + RK SK +TL+ A +YI L R+L++ + S
Sbjct: 15 KSIGNAFNMLRNHLPKQLR---------DRKPSKAETLKSAAQYISHLLRILEKEIENSS 65
Query: 128 D 128
+
Sbjct: 66 N 66
>U10402-7|AAA19069.1| 192|Caenorhabditis elegans C. elegans neuro d
homolog protein1 protein.
Length = 192
Score = 35.1 bits (77), Expect = 0.033
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 9/54 (16%)
Query: 70 VNNGFAALRQHIPSAVTAALAGGRGSSRKLSKVDTLRLAVEYIKSLKRLLDESD 123
+NN LR++IP +T +KLSK++TLRLA YI +L+R+L ++
Sbjct: 35 LNNALDMLREYIP--ITT-------QHQKLSKIETLRLARNYIDALQRMLQTNE 79
>U28944-18|AAA68375.2| 246|Caenorhabditis elegans Helix loop helix
protein 14 protein.
Length = 246
Score = 34.3 bits (75), Expect = 0.057
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 9/53 (16%)
Query: 69 QVNNGFAALRQHIPSAVTAALAGGRGSSRKLSKVDTLRLAVEYIKSLKRLLDE 121
QVN+GF LR + + ++K SK DTLR AV+YI+ L+ LL++
Sbjct: 117 QVNHGFDVLRNRLQP---------KNHTKKWSKADTLREAVKYIQQLQVLLNQ 160
>Z27079-2|CAA81589.1| 205|Caenorhabditis elegans Hypothetical
protein T05G5.2 protein.
Length = 205
Score = 32.7 bits (71), Expect = 0.17
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 8/54 (14%)
Query: 70 VNNGFAALRQHIPSAVTAALAGGRGSSRKLSKVDTLRLAVEYIKSLKRLLDESD 123
VN F L+QH+PS R ++++SK+ L A+ YI +L +L+ S+
Sbjct: 19 VNQAFLVLKQHLPSL--------RQFTKRVSKLRILNAAITYIDTLLKLIQSSE 64
>U58732-4|AAB00595.1| 147|Caenorhabditis elegans Helix loop helix
protein 13 protein.
Length = 147
Score = 32.3 bits (70), Expect = 0.23
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 97 RKLSKVDTLRLAVEYIKSLKRLLDESDDGCSDTQLGLGLSTTG 139
++LSK+DTL LA+ YI L +L +D Q + ++ TG
Sbjct: 75 KRLSKIDTLNLAIAYINMLDDVLRTPEDSGQYIQKCVHMARTG 117
>AF369899-1|AAK72958.1| 147|Caenorhabditis elegans Fer3-like
protein.
Length = 147
Score = 32.3 bits (70), Expect = 0.23
Identities = 16/43 (37%), Positives = 25/43 (58%)
Query: 97 RKLSKVDTLRLAVEYIKSLKRLLDESDDGCSDTQLGLGLSTTG 139
++LSK+DTL LA+ YI L +L +D Q + ++ TG
Sbjct: 75 KRLSKIDTLNLAIAYINMLDDVLRTPEDSGQYIQKCVHMARTG 117
>U40421-1|AAA81437.2| 178|Caenorhabditis elegans Helix loop helix
protein 8 protein.
Length = 178
Score = 31.1 bits (67), Expect = 0.53
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 68 KQVNNGFAALRQHIPSAVTAALAGGRGSSRKLSKVDTLRLAVEYIKSLKRL 118
K++N+ F LR+ IPS S K+SK+ TLR+A +YI L +
Sbjct: 34 KELNDAFTLLRKLIPSM----------PSDKMSKIHTLRIATDYISFLDEM 74
>AF037063-1|AAC26105.1| 178|Caenorhabditis elegans twist protein.
Length = 178
Score = 31.1 bits (67), Expect = 0.53
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 10/51 (19%)
Query: 68 KQVNNGFAALRQHIPSAVTAALAGGRGSSRKLSKVDTLRLAVEYIKSLKRL 118
K++N+ F LR+ IPS S K+SK+ TLR+A +YI L +
Sbjct: 34 KELNDAFTLLRKLIPSM----------PSDKMSKIHTLRIATDYISFLDEM 74
>U39472-4|AAK31389.2| 319|Caenorhabditis elegans Helix loop helix
protein 1, isoformc protein.
Length = 319
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/27 (40%), Positives = 22/27 (81%)
Query: 96 SRKLSKVDTLRLAVEYIKSLKRLLDES 122
+++L KV+ LR A++YI +L+R+L ++
Sbjct: 187 NQRLPKVEILRSAIDYINNLERMLQQA 213
>U39472-3|AAN39683.1| 320|Caenorhabditis elegans Helix loop helix
protein 1, isoforma protein.
Length = 320
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/27 (40%), Positives = 22/27 (81%)
Query: 96 SRKLSKVDTLRLAVEYIKSLKRLLDES 122
+++L KV+ LR A++YI +L+R+L ++
Sbjct: 183 NQRLPKVEILRSAIDYINNLERMLQQA 209
>U39472-2|AAN39684.1| 324|Caenorhabditis elegans Helix loop helix
protein 1, isoformb protein.
Length = 324
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/27 (40%), Positives = 22/27 (81%)
Query: 96 SRKLSKVDTLRLAVEYIKSLKRLLDES 122
+++L KV+ LR A++YI +L+R+L ++
Sbjct: 187 NQRLPKVEILRSAIDYINNLERMLQQA 213
>M59940-2|AAA16290.1| 320|Caenorhabditis elegans CeMyoD,
alternatively spliced productprotein.
Length = 320
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/27 (40%), Positives = 22/27 (81%)
Query: 96 SRKLSKVDTLRLAVEYIKSLKRLLDES 122
+++L KV+ LR A++YI +L+R+L ++
Sbjct: 183 NQRLPKVEILRSAIDYINNLERMLQQA 209
>M59940-1|AAA16289.1| 324|Caenorhabditis elegans CeMyoD protein.
Length = 324
Score = 29.9 bits (64), Expect = 1.2
Identities = 11/27 (40%), Positives = 22/27 (81%)
Query: 96 SRKLSKVDTLRLAVEYIKSLKRLLDES 122
+++L KV+ LR A++YI +L+R+L ++
Sbjct: 187 NQRLPKVEILRSAIDYINNLERMLQQA 213
>U50199-4|AAA91264.2| 142|Caenorhabditis elegans Abnormal cell
lineage protein 32 protein.
Length = 142
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 95 SSRKLSKVDTLRLAVEYIKSLKRLLDE 121
S +KLSK +TL++A +YI+ L ++L +
Sbjct: 104 SGKKLSKFETLQMAQKYIECLSQILKQ 130
>U15418-1|AAA67360.1| 71|Caenorhabditis elegans LIN-32 protein.
Length = 71
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 95 SSRKLSKVDTLRLAVEYIKSLKRLLDE 121
S +KLSK +TL++A +YI+ L ++L +
Sbjct: 33 SGKKLSKFETLQMAQKYIECLSQILKQ 59
>AF025464-2|AAN84804.1| 496|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform a protein.
Length = 496
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 2 PMAAIHGYQN--LGVDQKLTHLQTPAPRRLAPAPVDTTRCKKRSYLHQPYPTQP 53
P H Y N G Q +L TP P + AP P + T+ + +PT P
Sbjct: 240 PRQQQHVYSNPQQGYQQNYQNLYTPPPAQQAPIPTEKTQIPRPPSHGSAWPTFP 293
>AF025464-1|AAN84805.1| 529|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform b protein.
Length = 529
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 2 PMAAIHGYQN--LGVDQKLTHLQTPAPRRLAPAPVDTTRCKKRSYLHQPYPTQP 53
P H Y N G Q +L TP P + AP P + T+ + +PT P
Sbjct: 262 PRQQQHVYSNPQQGYQQNYQNLYTPPPAQQAPIPTEKTQIPRPPSHGSAWPTFP 315
>Z77666-6|CAB01232.1| 1321|Caenorhabditis elegans Hypothetical protein
K08E7.9 protein.
Length = 1321
Score = 28.3 bits (60), Expect = 3.7
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 73 GFAALRQHIPSAVTAALAGGR--GSSRKLSKVDTLRLAVE 110
GFA + P A AGG G RK+SK+D+L LA E
Sbjct: 1032 GFAT--SYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGE 1069
>X65054-1|CAA46190.1| 1321|Caenorhabditis elegans P-glycoprotein A
protein.
Length = 1321
Score = 28.3 bits (60), Expect = 3.7
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 73 GFAALRQHIPSAVTAALAGGR--GSSRKLSKVDTLRLAVE 110
GFA + P A AGG G RK+SK+D+L LA E
Sbjct: 1032 GFAT--SYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGE 1069
>Z71180-3|CAA94892.2| 763|Caenorhabditis elegans Hypothetical
protein F22E12.1 protein.
Length = 763
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 25 APRRLAPAPVDTTRCKKRS-YLHQPYPTQPAS 55
A RL P TT + + Y+H PYPT P +
Sbjct: 593 ARMRLTTIPTPTTTVETTTEYVHVPYPTLPVN 624
>AL021474-7|CAA16311.2| 763|Caenorhabditis elegans Hypothetical
protein F22E12.1 protein.
Length = 763
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 25 APRRLAPAPVDTTRCKKRS-YLHQPYPTQPAS 55
A RL P TT + + Y+H PYPT P +
Sbjct: 593 ARMRLTTIPTPTTTVETTTEYVHVPYPTLPVN 624
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.314 0.129 0.384
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,355,165
Number of Sequences: 27539
Number of extensions: 151791
Number of successful extensions: 268
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 246
Number of HSP's gapped (non-prelim): 25
length of query: 193
length of database: 12,573,161
effective HSP length: 78
effective length of query: 115
effective length of database: 10,425,119
effective search space: 1198888685
effective search space used: 1198888685
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 57 (27.1 bits)
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