GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001001-TA|BGIBMGA001001-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH, IPR011598|Helix-loop-helix
DNA-binding
         (193 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      32   0.003
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    24   0.83 
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   5.8  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 32.3 bits (70), Expect = 0.003
 Identities = 24/64 (37%), Positives = 34/64 (53%), Gaps = 13/64 (20%)

Query: 68  KQVNNGFAALRQHIPSAVTAALAGGRGSSRKLSKVDTLRLAVEYIKSLKRLLD---ESDD 124
           + +N  FAALR+ IP+            S KLSK+ TL+LA  YI  L ++L    E+ +
Sbjct: 267 QSLNEAFAALRKIIPTL----------PSDKLSKIQTLKLATRYIDFLFQVLHCNMENTE 316

Query: 125 GCSD 128
           G  D
Sbjct: 317 GADD 320


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 24.2 bits (50), Expect = 0.83
 Identities = 9/24 (37%), Positives = 16/24 (66%)

Query: 170 YDAYEPMSPEDEELLDVISWWQQQ 193
           Y   +P+SPE EEL+  + ++Q +
Sbjct: 325 YGYVKPISPEQEELIHRLVYFQNE 348


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 8/25 (32%), Positives = 16/25 (64%)

Query: 105 LRLAVEYIKSLKRLLDESDDGCSDT 129
           L ++V++IK     +D ++D C+ T
Sbjct: 182 LEMSVDFIKGSISNIDGAEDHCNKT 206


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.129    0.384 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,215
Number of Sequences: 429
Number of extensions: 1907
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 193
length of database: 140,377
effective HSP length: 54
effective length of query: 139
effective length of database: 117,211
effective search space: 16292329
effective search space used: 16292329
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 42 (21.0 bits)