Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001000-TA|BGIBMGA001000-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH, IPR011598|Helix-loop-helix
DNA-binding
(187 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27345| Best HMM Match : HLH (HMM E-Value=1.2e-20) 62 4e-10
SB_32910| Best HMM Match : No HMM Matches (HMM E-Value=.) 61 5e-10
SB_43185| Best HMM Match : HLH (HMM E-Value=4e-20) 58 6e-09
SB_535| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 6e-05
SB_37377| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_52528| Best HMM Match : HLH (HMM E-Value=3.9e-18) 39 0.003
SB_12347| Best HMM Match : HLH (HMM E-Value=3.8e-21) 38 0.004
SB_56922| Best HMM Match : HLH (HMM E-Value=1.9e-21) 37 0.009
SB_35548| Best HMM Match : BPL_LipA_LipB (HMM E-Value=1.5e-27) 35 0.048
SB_47522| Best HMM Match : HLH (HMM E-Value=1e-17) 35 0.048
SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.048
SB_6246| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.083
SB_9126| Best HMM Match : HLH (HMM E-Value=2.5e-18) 32 0.25
SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12) 30 1.0
SB_47523| Best HMM Match : HLH (HMM E-Value=1.1e-18) 30 1.0
SB_20446| Best HMM Match : HLH (HMM E-Value=1.26117e-44) 30 1.4
SB_17080| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_12345| Best HMM Match : HLH (HMM E-Value=1.4e-12) 29 3.1
SB_46206| Best HMM Match : HLH (HMM E-Value=5e-18) 27 7.2
SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_27345| Best HMM Match : HLH (HMM E-Value=1.2e-20)
Length = 153
Score = 61.7 bits (143), Expect = 4e-10
Identities = 36/87 (41%), Positives = 51/87 (58%), Gaps = 13/87 (14%)
Query: 19 KKYNYKNCSHNGTQAASIARRNARERNRVKQVNDGFNALRKRLPXXXXXXXXXXXXXXXX 78
+K + NC N + S+ RRN RERNRVK V+DGF ALRK +P
Sbjct: 58 RKCSSPNC--NKKEHVSVLRRNERERNRVKLVSDGFAALRKHIP-----------TTPVN 104
Query: 79 XXXSKVDTLRMVVEYIRYLQNMIDESD 105
SKV+TLR +EYI++LQ ++++S+
Sbjct: 105 KKLSKVETLRTAIEYIKHLQRILNDSN 131
>SB_32910| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 155
Score = 61.3 bits (142), Expect = 5e-10
Identities = 45/110 (40%), Positives = 64/110 (58%), Gaps = 18/110 (16%)
Query: 4 IAPAPE-TRLTLE-LE---PKKYNYKNCSHNG--TQAASIARRNARERNRVKQVNDGFNA 56
IAPA + T++ LE LE K K C+ + +++ARRN RERNRV+ VNDGF++
Sbjct: 33 IAPAKKKTKVALESLEGSNTKVVAKKKCTTLAFHMEPSAVARRNERERNRVRLVNDGFSS 92
Query: 57 LRKRLPXXXXXXXXXXXXXXXXXXXSKVDTLRMVVEYIRYLQNMIDESDA 106
LR+ +P SKV+TLR V YI++LQ++I+E DA
Sbjct: 93 LRQHIP-----------YFPEKKKLSKVETLRCAVAYIKHLQSLIEEYDA 131
>SB_43185| Best HMM Match : HLH (HMM E-Value=4e-20)
Length = 232
Score = 57.6 bits (133), Expect = 6e-09
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 11/74 (14%)
Query: 32 QAASIARRNARERNRVKQVNDGFNALRKRLPXXXXXXXXXXXXXXXXXXXSKVDTLRMVV 91
+ A +ARRNARER RVK VNDGF LRK +P SKV TLR +
Sbjct: 62 EPAVVARRNARERKRVKLVNDGFMRLRKHVP-----------TDPKNKKLSKVKTLRSAI 110
Query: 92 EYIRYLQNMIDESD 105
EYIR+LQ+++ +++
Sbjct: 111 EYIRHLQHLLGQAN 124
>SB_535| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 44.4 bits (100), Expect = 6e-05
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 12/76 (15%)
Query: 32 QAASIARRNARERNRVKQVNDGFNALRKRLPXXXXXXXXXXXXXXXXXXXSKVDTLRMVV 91
+ A I +RN RER RV+ VN+G+ LR+ LP SKV+TLR +
Sbjct: 51 EPAFIRKRNERERIRVRHVNEGYARLREHLP-----------EEPSDKRMSKVETLRAAI 99
Query: 92 EYIRYLQNMIDESDAA 107
YI++L++++ +++AA
Sbjct: 100 RYIKHLESLL-QAEAA 114
>SB_37377| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 43.6 bits (98), Expect = 1e-04
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 16/110 (14%)
Query: 10 TRLTLELEPK-KYNYKNCSHNGTQAASIARRNA---RERNRVKQVNDGFNALRKRLPXXX 65
T+ T ++ + + N K +Q I +R+A RER R++ +N+ F LRK +P
Sbjct: 15 TQFTYAIQTQDEKNLKRKRRRKSQNQQIVQRHAANLRERKRMQSINEAFEGLRKHIP--- 71
Query: 66 XXXXXXXXXXXXXXXXSKVDTLRMVVEYIRYLQNMIDESDAALGIPKQPS 115
SKVDTLR+ + YI +L MI+ SD + QPS
Sbjct: 72 --------TLPYEKRLSKVDTLRLAIGYIGFLTEMIN-SDMSHSQALQPS 112
>SB_52528| Best HMM Match : HLH (HMM E-Value=3.9e-18)
Length = 138
Score = 38.7 bits (86), Expect = 0.003
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 13/101 (12%)
Query: 40 NARERNRVKQVNDGFNALRKRLPXXXXXXXXXXXXXXXXXXXSKVDTLRMVVEYIRYLQN 99
N RERNRV+QVN F LR ++P SK+DT+R+ YI+ L
Sbjct: 41 NERERNRVQQVNAAFETLRNKIP-----------LRALEKKPSKIDTIRLATRYIQDLTQ 89
Query: 100 MID--ESDAALGIPKQPSIDLSTISYEADDGVFERSSPYTD 138
++ E++ + P + + + + DG S+ D
Sbjct: 90 LLSLAETEGRITSPSSSNGSVYSSTIADHDGSLYSSTTDQD 130
>SB_12347| Best HMM Match : HLH (HMM E-Value=3.8e-21)
Length = 143
Score = 38.3 bits (85), Expect = 0.004
Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 14/84 (16%)
Query: 40 NARERNRVKQVNDGFNALRKRLPXXXXXXXXXXXXXXXXXXXSKVDTLRMVVEYIRYLQN 99
NARERNR VN FNALR +P SK++TLR+ YI +L
Sbjct: 56 NARERNRTHSVNAAFNALRLLIP-----------TEPSDRKLSKIETLRLASSYIAHLST 104
Query: 100 MIDESDAALGIPKQPSID-LSTIS 122
++ +P S+D + TIS
Sbjct: 105 ILISGTQCPNVPS--SMDHIRTIS 126
>SB_56922| Best HMM Match : HLH (HMM E-Value=1.9e-21)
Length = 157
Score = 37.1 bits (82), Expect = 0.009
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
Query: 40 NARERNRVKQVNDGFNALRKRLPXXXXXXXXXXXXXXXXXXXSKVDTLRMVVEYIRYLQN 99
N +ER R + +N F LR +P SK+ TLR+ + YIRYL +
Sbjct: 37 NRKERKRTQTMNTAFEDLRNHIPNVPPDTKL-----------SKIKTLRLAISYIRYLMD 85
Query: 100 MIDES 104
+++ES
Sbjct: 86 ILEES 90
>SB_35548| Best HMM Match : BPL_LipA_LipB (HMM E-Value=1.5e-27)
Length = 378
Score = 34.7 bits (76), Expect = 0.048
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 38 RRNARERNRVKQVNDGFNALRKRLPXXXXXXXXXXXXXXXXXXXSKVDTLRMVVEYIRYL 97
RRNARER R ++N F+ LR +P ++++TLR+ YI L
Sbjct: 297 RRNARERERQGRLNSAFDVLRGVIP-------DYLSGKGPERKLTQIETLRLATHYIMAL 349
Query: 98 QNMIDESD 105
M+++ +
Sbjct: 350 SEMLEDEN 357
>SB_47522| Best HMM Match : HLH (HMM E-Value=1e-17)
Length = 213
Score = 34.7 bits (76), Expect = 0.048
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 9/61 (14%)
Query: 41 ARERNRVKQVNDGFNALRKRLPXXXXXXXXXXXXXXXXXXXSKVDTLRMVVEYIRYLQNM 100
ARER+R+ +ND F++LRK +P SK+ TLR+ + YI L ++
Sbjct: 74 ARERSRMHSLNDAFDSLRKAIP---------KTNYNQEEKPSKIATLRLAIHYIAALSDI 124
Query: 101 I 101
+
Sbjct: 125 L 125
>SB_26423| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 175
Score = 34.7 bits (76), Expect = 0.048
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 40 NARERNRVKQVNDGFNALRKRLPXXXXXXXXXXXXXXXXXXXSKVDTLRMVVEYIRYLQN 99
NARERNR++ ++D LR LP SK+ TLR+ + YI L
Sbjct: 43 NARERNRMRSISDALLHLRYHLP---------QTVVAKDKKLSKIQTLRLAIRYISDLFE 93
Query: 100 MIDESDAALGI 110
++ +SD GI
Sbjct: 94 IL-QSDDGQGI 103
>SB_6246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 33.9 bits (74), Expect = 0.083
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 15/101 (14%)
Query: 8 PETRLTLELEPKK--YNYKNCSHNGTQAASIAR--RNARERNRVKQVNDGFNALRKRLPX 63
PE++ PK + ++ H T A + R N RER R++ +N ALRK +P
Sbjct: 31 PESKKQSTFPPKMRLHPEESSKHKITAEARLRRLRANDRERRRIQSINVALEALRKAVP- 89
Query: 64 XXXXXXXXXXXXXXXXXXSKVDTLRMVVEYIRYLQNMIDES 104
+K+DTL + +YI++L ++ +
Sbjct: 90 ----------NTRSSGKLTKLDTLLLARDYIKHLNEILQRT 120
>SB_9126| Best HMM Match : HLH (HMM E-Value=2.5e-18)
Length = 179
Score = 32.3 bits (70), Expect = 0.25
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 38 RRNARERNRVKQVNDGFNALRKRLPXXXXXXXXXXXXXXXXXXXSKVDTLRMVVEYIRYL 97
+ +ARER R +N+ LRK++P SK++ LR+ ++YI L
Sbjct: 42 KASARERKRRHVLNNALELLRKKVPCVDQNPQKL----------SKIEVLRLAIDYIAML 91
Query: 98 QNMIDESDAALGIPKQPSIDLSTISYEA 125
++ S +A + QP++ S S A
Sbjct: 92 SCYLNNSQSA-AVCSQPALSASIGSQAA 118
>SB_3829| Best HMM Match : HLH (HMM E-Value=4.4e-12)
Length = 1650
Score = 30.3 bits (65), Expect = 1.0
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 42 RERNRVKQVNDGFNALRKRLPXXXXXXXXXXXXXXXXXXXSKVDTLRMVVEYIRYLQNMI 101
RE+ R++ N F+ALR+ L +K++TLR+ +EYI+ L +
Sbjct: 77 REKRRLQMSNKAFDALRESL---------YNFAKTGSRRLTKLETLRLAIEYIKELTQSL 127
Query: 102 DE 103
+E
Sbjct: 128 NE 129
>SB_47523| Best HMM Match : HLH (HMM E-Value=1.1e-18)
Length = 207
Score = 30.3 bits (65), Expect = 1.0
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 19 KKYNYKNCSHNGTQAASIARR---NARERNRVKQVNDGFNALRKRLP 62
K+ K+ N + ++ +RR NARER+R+ +++ F +LRK +P
Sbjct: 26 KRKKDKSKKTNSWKHSNRSRRLIANARERSRIHTMSEAFESLRKAVP 72
>SB_20446| Best HMM Match : HLH (HMM E-Value=1.26117e-44)
Length = 424
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 40 NARERNRVKQVNDGFNALRKRLP 62
N+ ER R++ +N GF ALR +P
Sbjct: 49 NSNERRRMQSINSGFQALRMLIP 71
Score = 29.9 bits (64), Expect = 1.4
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 40 NARERNRVKQVNDGFNALRKRLP 62
N+ ER R++ +N GF ALR +P
Sbjct: 216 NSNERRRMQSINSGFQALRMLIP 238
>SB_17080| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 313
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 31 TQAASIARRNARERNRVKQVNDGFNALRKRLP 62
T+++ N +ER RV+++N+ F LR+ LP
Sbjct: 18 TESSKRLEANKKERMRVQKMNNAFQDLRRVLP 49
>SB_12345| Best HMM Match : HLH (HMM E-Value=1.4e-12)
Length = 124
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 15 ELEPKKYNYKNCSHNGTQAASIARR----NARERNRVKQVNDGFNALRKRLP 62
E E + K G + ++++ NARERNRV +N LR+ +P
Sbjct: 24 EPESPQQKKKKARRRGPRLTGVSKQRRLANARERNRVHILNTNIQVLRELIP 75
>SB_46206| Best HMM Match : HLH (HMM E-Value=5e-18)
Length = 400
Score = 27.5 bits (58), Expect = 7.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 38 RRNARERNRVKQVNDGFNALRKRLP 62
R N RER R+K +N ++L+K +P
Sbjct: 307 RANDRERRRMKSLNRALDSLKKCIP 331
>SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1995
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 6 PAPETRLTLELEPKKYNYKNCSH-NGTQAASIARRNARERNRVKQVN 51
P+P T L+P+ K+ S+ N T+A S + + + KQ N
Sbjct: 588 PSPPATTTASLKPQNNKQKDSSNKNSTKATSRKKSKVQSISHTKQAN 634
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.314 0.131 0.378
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,091,413
Number of Sequences: 59808
Number of extensions: 162006
Number of successful extensions: 271
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 241
Number of HSP's gapped (non-prelim): 29
length of query: 187
length of database: 16,821,457
effective HSP length: 78
effective length of query: 109
effective length of database: 12,156,433
effective search space: 1325051197
effective search space used: 1325051197
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 57 (27.1 bits)
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