Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001000-TA|BGIBMGA001000-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH, IPR011598|Helix-loop-helix
DNA-binding
         (187 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      31   0.009
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    21   7.4  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    21   7.4  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   7.4  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    21   7.4  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    21   7.4  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   7.4  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    21   7.4  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   7.4  

>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 30.7 bits (66), Expect = 0.009
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 12/58 (20%)

Query: 40  NARERNRVKQVNDGFNALRKRLPXXXXXXXXXXXXXXXXXXXSKVDTLRMVVEYIRYL 97
           N RER R + +N+ F ALRK +P                   SK+ TL++   YI +L
Sbjct: 259 NVRERQRTQSLNEAFAALRKIIP------------TLPSDKLSKIQTLKLATRYIDFL 304


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
          determiner protein.
          Length = 177

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 15 ELEPKKYNYKNCSHNGTQAASIARRNARERNRVKQ 49
          E E K Y  +N      + +    R+ +ER R K+
Sbjct: 44 EREKKSYKNENSYRKYRETSKERSRDRKERERSKE 78


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
          determiner protein.
          Length = 177

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 15 ELEPKKYNYKNCSHNGTQAASIARRNARERNRVKQ 49
          E E K Y  +N      + +    R+ +ER R K+
Sbjct: 44 EREKKSYKNENSYRKYRETSKERSRDRKERERSKE 78


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
          determiner protein.
          Length = 176

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 15 ELEPKKYNYKNCSHNGTQAASIARRNARERNRVKQ 49
          E E K Y  +N      + +    R+ +ER R K+
Sbjct: 44 EREKKSYKNENSYRKYRETSKERSRDRKERERSKE 78


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
          determiner protein.
          Length = 177

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 15 ELEPKKYNYKNCSHNGTQAASIARRNARERNRVKQ 49
          E E K Y  +N      + +    R+ +ER R K+
Sbjct: 44 EREKKSYKNENSYRKYRETSKERSRDRKERERSKE 78


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
          determiner protein.
          Length = 178

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 15 ELEPKKYNYKNCSHNGTQAASIARRNARERNRVKQ 49
          E E K Y  +N      + +    R+ +ER R K+
Sbjct: 44 EREQKSYKNENSYRKYRETSKERSRDRKERERSKE 78


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 15  ELEPKKYNYKNCSHNGTQAASIARRNARERNRVKQ 49
           E E K Y  +N      + +    R+ +ER R K+
Sbjct: 277 EREQKSYKNENSYRKYRETSKERSRDRKERERSKE 311


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 15  ELEPKKYNYKNCSHNGTQAASIARRNARERNRVKQ 49
           E E K Y  +N      + +    R+ RER R ++
Sbjct: 277 EREQKSYKNENSYRKYRETSKERSRDRRERGRSRE 311


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 21.0 bits (42), Expect = 7.4
 Identities = 10/35 (28%), Positives = 16/35 (45%)

Query: 15  ELEPKKYNYKNCSHNGTQAASIARRNARERNRVKQ 49
           E E K Y  +N      + +    R+ +ER R K+
Sbjct: 277 EREKKSYKNENSYRKYRETSKERSRDRKERERSKE 311


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.131    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,250
Number of Sequences: 429
Number of extensions: 1531
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 187
length of database: 140,377
effective HSP length: 54
effective length of query: 133
effective length of database: 117,211
effective search space: 15589063
effective search space used: 15589063
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.5 bits)
S2: 41 (20.6 bits)