GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001000-TA|BGIBMGA001000-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH, IPR011598|Helix-loop-helix
DNA-binding
         (187 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    26   3.0  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    25   6.9  

>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 115 SIDLSTISYEADDGVFERSSPYTD 138
           S+D STI YE D   ++R+  YT+
Sbjct: 241 SLDHSTIIYEGDSTFWKRNGDYTN 264


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 9   ETRLTLELEPKKYNYKNCSHNGTQAASIARRN 40
           E  LT++ +  +  +K   HN +  AS  +RN
Sbjct: 265 EDNLTIQPQTPRRRHKRSRHNSSNLASTPKRN 296


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.131    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 724,686
Number of Sequences: 5004
Number of extensions: 22851
Number of successful extensions: 30
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 2
length of query: 187
length of database: 2,362,478
effective HSP length: 69
effective length of query: 118
effective length of database: 2,017,202
effective search space: 238029836
effective search space used: 238029836
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 51 (24.6 bits)