GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001000-TA|BGIBMGA001000-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH, IPR011598|Helix-loop-helix
DNA-binding
         (187 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0203 - 41968071-41968154,41969499-41969858,41969946-41970248     27   7.0  

>01_07_0203 -
          41968071-41968154,41969499-41969858,41969946-41970248
          Length = 248

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/23 (52%), Positives = 18/23 (78%)

Query: 40 NARERNRVKQVNDGFNALRKRLP 62
          NA ER+R KQ+N+ +++LR  LP
Sbjct: 74 NAYERDRRKQLNELYSSLRALLP 96


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.314    0.131    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,334,279
Number of Sequences: 37544
Number of extensions: 129485
Number of successful extensions: 200
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 199
Number of HSP's gapped (non-prelim): 1
length of query: 187
length of database: 14,793,348
effective HSP length: 78
effective length of query: 109
effective length of database: 11,864,916
effective search space: 1293275844
effective search space used: 1293275844
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 57 (27.1 bits)