GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001000-TA|BGIBMGA001000-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH, IPR011598|Helix-loop-helix
DNA-binding
         (187 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF395079-1|AAK97461.1|  371|Anopheles gambiae basic helix-loop-h...    80   4e-17
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    27   0.47 
AJ000675-1|CAA04232.1|  600|Anopheles gambiae infection responsi...    25   1.9  
DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative methopren...    24   2.5  

>AF395079-1|AAK97461.1|  371|Anopheles gambiae basic
           helix-loop-helix transcriptionfactor ASH protein.
          Length = 371

 Score = 80.2 bits (189), Expect = 4e-17
 Identities = 46/96 (47%), Positives = 55/96 (57%), Gaps = 2/96 (2%)

Query: 19  KKYNYKNCSH-NGTQAASIARRNARERNRVKQVNDGFNALRKRLPXXXXXXXXXXXXXXX 77
           KKY Y    +    Q+AS+ RRNARERNRVKQVN+GF  LR+ +P               
Sbjct: 85  KKYAYCGLPYATPQQSASVQRRNARERNRVKQVNNGFANLRQHIP-STVVTALTNGARGA 143

Query: 78  XXXXSKVDTLRMVVEYIRYLQNMIDESDAALGIPKQ 113
               SKVDTLR+ VEYIR LQ M+DE+   L   KQ
Sbjct: 144 NKKLSKVDTLRLAVEYIRSLQRMLDENGGELPSNKQ 179



 Score = 31.1 bits (67), Expect = 0.022
 Identities = 12/28 (42%), Positives = 21/28 (75%), Gaps = 3/28 (10%)

Query: 163 NFQIEEQITPM---DDDLLNTISWWQEK 187
           N Q +E+++P    D++LL+ ISWWQ++
Sbjct: 344 NTQYDEELSPQNPDDEELLDYISWWQQQ 371


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 26.6 bits (56), Expect = 0.47
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 4   IAPAPETRLTLELEPKKYNYKNC---SHNGTQAASIARRNARERNRVKQVNDGFNA 56
           + PAP    +  ++P +++  +    S N + ++S A RN   ++R   V DG N+
Sbjct: 942 LPPAPAAASSAGVQPTEHSVNSTNVTSINSSSSSSTADRNGDTKSRSPVVADGHNS 997


>AJ000675-1|CAA04232.1|  600|Anopheles gambiae infection responsive
           serine proteaselike protein protein.
          Length = 600

 Score = 24.6 bits (51), Expect = 1.9
 Identities = 8/24 (33%), Positives = 14/24 (58%)

Query: 3   AIAPAPETRLTLELEPKKYNYKNC 26
           A  P P   LT +  P+ ++Y++C
Sbjct: 299 AADPPPTPALTAQFSPESFSYQDC 322


>DQ303468-1|ABC18327.1| 1115|Anopheles gambiae putative
           methoprene-tolerant protein protein.
          Length = 1115

 Score = 24.2 bits (50), Expect = 2.5
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 5/42 (11%)

Query: 21  YNYKNCSHNGTQAASIARRNARERNRVKQVNDGFNALRKRLP 62
           YN  N + NG +A     RN  E+NR  ++N     L   +P
Sbjct: 214 YNMFNFNRNGREA-----RNRAEKNRRDKLNGSIQELSAMVP 250


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.314    0.131    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,551
Number of Sequences: 2123
Number of extensions: 4777
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 5
length of query: 187
length of database: 516,269
effective HSP length: 60
effective length of query: 127
effective length of database: 388,889
effective search space: 49388903
effective search space used: 49388903
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 46 (22.6 bits)