GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001000-TA|BGIBMGA001000-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH, IPR011598|Helix-loop-helix
DNA-binding
         (187 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47356-3|CAA87416.1|  268|Caenorhabditis elegans Hypothetical pr...    53   1e-07
U28944-18|AAA68375.2|  246|Caenorhabditis elegans Helix loop hel...    48   3e-06
Z68338-7|CAA92758.1|  203|Caenorhabditis elegans Hypothetical pr...    41   5e-04
U78953-1|AAB38323.1|  185|Caenorhabditis elegans basic helix-loo...    41   5e-04
Z27079-2|CAA81589.1|  205|Caenorhabditis elegans Hypothetical pr...    38   0.006
U40421-1|AAA81437.2|  178|Caenorhabditis elegans Helix loop heli...    37   0.008
AF037063-1|AAC26105.1|  178|Caenorhabditis elegans twist protein.      37   0.008
U41554-2|AAA83297.2|  111|Caenorhabditis elegans Helix loop heli...    33   0.13 
U41110-3|AAA82418.1|  170|Caenorhabditis elegans Helix loop heli...    32   0.29 
AC084158-30|AAK68574.1|  184|Caenorhabditis elegans Neurogenin p...    31   0.38 
Z96047-3|CAB09412.1|  207|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U10402-7|AAA19069.1|  192|Caenorhabditis elegans C. elegans neur...    29   1.6  
Z78540-4|CAB01734.2|  624|Caenorhabditis elegans Hypothetical pr...    27   6.3  
U21308-2|AAB93313.3|  507|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>Z47356-3|CAA87416.1|  268|Caenorhabditis elegans Hypothetical
           protein T15H9.3 protein.
          Length = 268

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 11/72 (15%)

Query: 30  GTQAASIARRNARERNRVKQVNDGFNALRKRLPXXXXXXXXXXXXXXXXXXXSKVDTLRM 89
           G  ++S+ +RN RER RV+ VNDG+  LRK LP                   SKVDTLR+
Sbjct: 169 GPYSSSVWKRNERERCRVRNVNDGYERLRKHLP-----------VHFDEKRISKVDTLRL 217

Query: 90  VVEYIRYLQNMI 101
            + YI++L N++
Sbjct: 218 AIRYIKHLDNLL 229


>U28944-18|AAA68375.2|  246|Caenorhabditis elegans Helix loop helix
           protein 14 protein.
          Length = 246

 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 34/85 (40%), Positives = 43/85 (50%), Gaps = 17/85 (20%)

Query: 39  RNARERNRVKQVNDGFNALRKRLPXXXXXXXXXXXXXXXXXXXSKVDTLRMVVEYIRYLQ 98
           RN RER RV QVN GF+ LR RL                    SK DTLR  V+YI+ LQ
Sbjct: 107 RNERERKRVHQVNHGFDVLRNRL-----------QPKNHTKKWSKADTLREAVKYIQQLQ 155

Query: 99  NMIDESDAALGIPKQPSIDLSTISY 123
            ++++       P+QPS+  ST  Y
Sbjct: 156 VLLNQD------PQQPSVSSSTPDY 174


>Z68338-7|CAA92758.1|  203|Caenorhabditis elegans Hypothetical
           protein T24B8.6 protein.
          Length = 203

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 10/70 (14%)

Query: 38  RRNARERNRVKQVNDGFNALRKRLPXXXXXXXXXXXXXXXXXXXSKVDTLRMVVEYIRYL 97
           +RN RER RV QVN GF  L++R+P                   SKV+TLR    YI+ L
Sbjct: 63  KRNERERKRVDQVNQGFVLLQERVP----------KAAGNKAKLSKVETLREAARYIQEL 112

Query: 98  QNMIDESDAA 107
           Q  +  S  +
Sbjct: 113 QKQLGMSSTS 122


>U78953-1|AAB38323.1|  185|Caenorhabditis elegans basic
           helix-loop-helix DNA bindingprotein HLH-3 protein.
          Length = 185

 Score = 41.1 bits (92), Expect = 5e-04
 Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 10/70 (14%)

Query: 38  RRNARERNRVKQVNDGFNALRKRLPXXXXXXXXXXXXXXXXXXXSKVDTLRMVVEYIRYL 97
           +RN RER RV QVN GF  L++R+P                   SKV+TLR    YI+ L
Sbjct: 30  KRNERERKRVDQVNQGFVLLQERVP----------KAAGNKAKLSKVETLREAARYIQEL 79

Query: 98  QNMIDESDAA 107
           Q  +  S  +
Sbjct: 80  QKQLGMSSTS 89


>Z27079-2|CAA81589.1|  205|Caenorhabditis elegans Hypothetical
          protein T05G5.2 protein.
          Length = 205

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 18/57 (31%), Positives = 27/57 (47%)

Query: 36 IARRNARERNRVKQVNDGFNALRKRLPXXXXXXXXXXXXXXXXXXXSKVDTLRMVVE 92
          +A+RNARER RV  VN  F  L++ LP                   + +DTL  +++
Sbjct: 5  VAKRNARERTRVHTVNQAFLVLKQHLPSLRQFTKRVSKLRILNAAITYIDTLLKLIQ 61


>U40421-1|AAA81437.2|  178|Caenorhabditis elegans Helix loop helix
           protein 8 protein.
          Length = 178

 Score = 37.1 bits (82), Expect = 0.008
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 12/61 (19%)

Query: 40  NARERNRVKQVNDGFNALRKRLPXXXXXXXXXXXXXXXXXXXSKVDTLRMVVEYIRYLQN 99
           N RER R K++ND F  LRK +P                   SK+ TLR+  +YI +L  
Sbjct: 26  NRRERQRTKELNDAFTLLRKLIP------------SMPSDKMSKIHTLRIATDYISFLDE 73

Query: 100 M 100
           M
Sbjct: 74  M 74


>AF037063-1|AAC26105.1|  178|Caenorhabditis elegans twist protein.
          Length = 178

 Score = 37.1 bits (82), Expect = 0.008
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 12/61 (19%)

Query: 40  NARERNRVKQVNDGFNALRKRLPXXXXXXXXXXXXXXXXXXXSKVDTLRMVVEYIRYLQN 99
           N RER R K++ND F  LRK +P                   SK+ TLR+  +YI +L  
Sbjct: 26  NRRERQRTKELNDAFTLLRKLIP------------SMPSDKMSKIHTLRIATDYISFLDE 73

Query: 100 M 100
           M
Sbjct: 74  M 74


>U41554-2|AAA83297.2|  111|Caenorhabditis elegans Helix loop helix
           protein 19 protein.
          Length = 111

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 11/66 (16%)

Query: 38  RRNARERNRVKQVNDGFNALRKRLPXXXXXXXXXXXXXXXXXXXSKVDTLRMVVEYIRYL 97
           R NARER R K + + FN LR  LP                   SK +TL+   +YI +L
Sbjct: 5   RANARERCRQKSIGNAFNMLRNHLP-----------KQLRDRKPSKAETLKSAAQYISHL 53

Query: 98  QNMIDE 103
             ++++
Sbjct: 54  LRILEK 59


>U41110-3|AAA82418.1|  170|Caenorhabditis elegans Helix loop helix
           protein 10 protein.
          Length = 170

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 12/65 (18%)

Query: 40  NARERNRVKQVNDGFNALRKRLPXXXXXXXXXXXXXXXXXXXSKVDTLRMVVEYIRYLQN 99
           NARERNRV+Q++  F+ LR  LP                   SK+ TL++   YI YL  
Sbjct: 95  NARERNRVQQLSKMFDQLRVCLP------------IEDDAKISKLATLKVASSYIGYLGA 142

Query: 100 MIDES 104
           ++ E+
Sbjct: 143 ILQEN 147


>AC084158-30|AAK68574.1|  184|Caenorhabditis elegans Neurogenin
          protein 1 protein.
          Length = 184

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 10 TRLTLELEPKKYNYKNCSHNGTQAASIARR---NARERNRVKQVNDGFNALRKRLP 62
          T+  ++ E ++Y  +  S    + A   RR   NARER R+  +ND    LR  LP
Sbjct: 35 TQKPVKREKRRYRCRKRSPATIERAKTVRRDKANARERRRMNSLNDALEHLRGILP 90


>Z96047-3|CAB09412.1|  207|Caenorhabditis elegans Hypothetical
          protein DY3.3 protein.
          Length = 207

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/23 (52%), Positives = 17/23 (73%)

Query: 40 NARERNRVKQVNDGFNALRKRLP 62
          N+RER R+ ++ND F  LR+ LP
Sbjct: 46 NSRERRRMHELNDEFETLRECLP 68


>U10402-7|AAA19069.1|  192|Caenorhabditis elegans C. elegans neuro d
           homolog protein1 protein.
          Length = 192

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 11/68 (16%)

Query: 38  RRNARERNRVKQVNDGFNALRKRLPXXXXXXXXXXXXXXXXXXXSKVDTLRMVVEYIRYL 97
           + N RER R+  +N+  + LR+ +P                   SK++TLR+   YI  L
Sbjct: 23  KANGRERARMHGLNNALDMLREYIPITTQHQKL-----------SKIETLRLARNYIDAL 71

Query: 98  QNMIDESD 105
           Q M+  ++
Sbjct: 72  QRMLQTNE 79


>Z78540-4|CAB01734.2|  624|Caenorhabditis elegans Hypothetical
          protein C33G3.6 protein.
          Length = 624

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/31 (41%), Positives = 15/31 (48%)

Query: 17 EPKKYNYKNCSHNGTQAASIARRNARERNRV 47
          E    N KN   N T    I R+N  ERNR+
Sbjct: 47 ESNTENLKNTGENATACNGINRKNYIERNRI 77


>U21308-2|AAB93313.3|  507|Caenorhabditis elegans Hypothetical
           protein ZK1290.6 protein.
          Length = 507

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 12/30 (40%), Positives = 21/30 (70%)

Query: 31  TQAASIARRNARERNRVKQVNDGFNALRKR 60
           T++AS AR  +RERNR++  ++  + +R R
Sbjct: 470 TRSASTARGRSRERNRLRSKSNDPSFIRSR 499


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.314    0.131    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,857,477
Number of Sequences: 27539
Number of extensions: 120283
Number of successful extensions: 247
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 226
Number of HSP's gapped (non-prelim): 20
length of query: 187
length of database: 12,573,161
effective HSP length: 77
effective length of query: 110
effective length of database: 10,452,658
effective search space: 1149792380
effective search space used: 1149792380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 57 (27.1 bits)