BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001000-TA|BGIBMGA001000-PA|IPR001092|Basic helix-loop-helix dimerisation region bHLH, IPR011598|Helix-loop-helix DNA-binding (187 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g22760.1 68415.m02699 basic helix-loop-helix (bHLH) family pr... 31 0.63 At5g60690.1 68418.m07616 homeodomain-leucine zipper protein Revo... 28 4.5 At3g61950.2 68416.m06958 basic helix-loop-helix (bHLH) family pr... 27 7.8 At3g61950.1 68416.m06957 basic helix-loop-helix (bHLH) family pr... 27 7.8 At3g56970.1 68416.m06340 basic helix-loop-helix (bHLH) family pr... 27 7.8 >At2g22760.1 68415.m02699 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain Length = 295 Score = 30.7 bits (66), Expect = 0.63 Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 6/135 (4%) Query: 2 VAIAPAPETRLTLELEPKKYNYKNCSHNGTQAASIARRNA-RERNRVKQVNDGFNALRKR 60 V +PA E + +L + K CSH GT++ +A+ + ER R +++++ F AL Sbjct: 83 VISSPAAEEIIMDKLVGRGTKRKTCSH-GTRSPVLAKEHVLAERKRREKLSEKFIALSAL 141 Query: 61 LP---XXXXXXXXXXXXXXXXXXXSKVDTLRMVVEYIRYLQNMIDESDAALGIPKQPSID 117 LP ++ TL+ E R +++MI + + ++P++ Sbjct: 142 LPGLKKADKVTILDDAISRMKQLQEQLRTLKEEKEATRQMESMILVKKSKVFFDEEPNLS 201 Query: 118 LS-TISYEADDGVFE 131 S ++ E D + E Sbjct: 202 CSPSVHIEFDQALPE 216 >At5g60690.1 68418.m07616 homeodomain-leucine zipper protein Revoluta (REV) / fascicular fiberless 1 (IFL1) identical to HD-zip transcription factor Revoluta (GI:9759333) {Arabidopsis thaliana}; contains Pfam profiles PF01852: START domain and PF00046: Homeobox domain Length = 842 Score = 27.9 bits (59), Expect = 4.5 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%) Query: 82 SKVDTLRMVVEYIRYLQNMIDES--DAALGIPKQPSIDLSTISYEADDGVFERSSPYTD 138 SKV +M + +RY++ + ES + G+ +QP++ L T S G + + + D Sbjct: 352 SKVVAQKMTISALRYIRQLAQESNGEVVYGLGRQPAV-LRTFSQRLSRGFNDAVNGFGD 409 >At3g61950.2 68416.m06958 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain Length = 307 Score = 27.1 bits (57), Expect = 7.8 Identities = 12/22 (54%), Positives = 16/22 (72%) Query: 41 ARERNRVKQVNDGFNALRKRLP 62 A ERNR +Q+N+ N+LR LP Sbjct: 131 AVERNRRRQMNEHINSLRALLP 152 >At3g61950.1 68416.m06957 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain Length = 358 Score = 27.1 bits (57), Expect = 7.8 Identities = 12/22 (54%), Positives = 16/22 (72%) Query: 41 ARERNRVKQVNDGFNALRKRLP 62 A ERNR +Q+N+ N+LR LP Sbjct: 182 AVERNRRRQMNEHINSLRALLP 203 >At3g56970.1 68416.m06340 basic helix-loop-helix (bHLH) family protein Length = 253 Score = 27.1 bits (57), Expect = 7.8 Identities = 12/23 (52%), Positives = 17/23 (73%) Query: 40 NARERNRVKQVNDGFNALRKRLP 62 NA ER+R K++N F++LR LP Sbjct: 77 NASERDRRKKINTLFSSLRSCLP 99 Database: arabidopsis Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.314 0.131 0.378 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,594,703 Number of Sequences: 28952 Number of extensions: 109777 Number of successful extensions: 201 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 198 Number of HSP's gapped (non-prelim): 5 length of query: 187 length of database: 12,070,560 effective HSP length: 77 effective length of query: 110 effective length of database: 9,841,256 effective search space: 1082538160 effective search space used: 1082538160 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 42 (22.0 bits) S2: 57 (27.1 bits)
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