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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001000-TA|BGIBMGA001000-PA|IPR001092|Basic
helix-loop-helix dimerisation region bHLH, IPR011598|Helix-loop-helix
DNA-binding
         (187 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g22760.1 68415.m02699 basic helix-loop-helix (bHLH) family pr...    31   0.63 
At5g60690.1 68418.m07616 homeodomain-leucine zipper protein Revo...    28   4.5  
At3g61950.2 68416.m06958 basic helix-loop-helix (bHLH) family pr...    27   7.8  
At3g61950.1 68416.m06957 basic helix-loop-helix (bHLH) family pr...    27   7.8  
At3g56970.1 68416.m06340 basic helix-loop-helix (bHLH) family pr...    27   7.8  

>At2g22760.1 68415.m02699 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 295

 Score = 30.7 bits (66), Expect = 0.63
 Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 6/135 (4%)

Query: 2   VAIAPAPETRLTLELEPKKYNYKNCSHNGTQAASIARRNA-RERNRVKQVNDGFNALRKR 60
           V  +PA E  +  +L  +    K CSH GT++  +A+ +   ER R +++++ F AL   
Sbjct: 83  VISSPAAEEIIMDKLVGRGTKRKTCSH-GTRSPVLAKEHVLAERKRREKLSEKFIALSAL 141

Query: 61  LP---XXXXXXXXXXXXXXXXXXXSKVDTLRMVVEYIRYLQNMIDESDAALGIPKQPSID 117
           LP                       ++ TL+   E  R +++MI    + +   ++P++ 
Sbjct: 142 LPGLKKADKVTILDDAISRMKQLQEQLRTLKEEKEATRQMESMILVKKSKVFFDEEPNLS 201

Query: 118 LS-TISYEADDGVFE 131
            S ++  E D  + E
Sbjct: 202 CSPSVHIEFDQALPE 216


>At5g60690.1 68418.m07616 homeodomain-leucine zipper protein
           Revoluta (REV) / fascicular fiberless 1 (IFL1) identical
           to HD-zip transcription factor Revoluta (GI:9759333)
           {Arabidopsis thaliana}; contains Pfam profiles PF01852:
           START domain and PF00046: Homeobox domain
          Length = 842

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 82  SKVDTLRMVVEYIRYLQNMIDES--DAALGIPKQPSIDLSTISYEADDGVFERSSPYTD 138
           SKV   +M +  +RY++ +  ES  +   G+ +QP++ L T S     G  +  + + D
Sbjct: 352 SKVVAQKMTISALRYIRQLAQESNGEVVYGLGRQPAV-LRTFSQRLSRGFNDAVNGFGD 409


>At3g61950.2 68416.m06958 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 307

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/22 (54%), Positives = 16/22 (72%)

Query: 41  ARERNRVKQVNDGFNALRKRLP 62
           A ERNR +Q+N+  N+LR  LP
Sbjct: 131 AVERNRRRQMNEHINSLRALLP 152


>At3g61950.1 68416.m06957 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 358

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/22 (54%), Positives = 16/22 (72%)

Query: 41  ARERNRVKQVNDGFNALRKRLP 62
           A ERNR +Q+N+  N+LR  LP
Sbjct: 182 AVERNRRRQMNEHINSLRALLP 203


>At3g56970.1 68416.m06340 basic helix-loop-helix (bHLH) family
          protein
          Length = 253

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 12/23 (52%), Positives = 17/23 (73%)

Query: 40 NARERNRVKQVNDGFNALRKRLP 62
          NA ER+R K++N  F++LR  LP
Sbjct: 77 NASERDRRKKINTLFSSLRSCLP 99


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.131    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,594,703
Number of Sequences: 28952
Number of extensions: 109777
Number of successful extensions: 201
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 198
Number of HSP's gapped (non-prelim): 5
length of query: 187
length of database: 12,070,560
effective HSP length: 77
effective length of query: 110
effective length of database: 9,841,256
effective search space: 1082538160
effective search space used: 1082538160
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 57 (27.1 bits)

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