Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000998-TA|BGIBMGA000998-PA|undefined
         (124 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    23   1.3  
DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein ...    21   4.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   4.1  
AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein ...    21   4.1  
AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific pro...    21   4.1  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   4.1  
DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein ...    20   7.1  
DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1 pr...    20   7.1  
AY939856-1|AAX33236.1|  223|Apis mellifera venom carbohydrate-ri...    20   7.1  
AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2 protein.    20   7.1  
AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein ...    20   7.1  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 97  LNLAHYVNNSIKEIDVKRLNNTEAII 122
           LN+ HY    I + D++  N  +AII
Sbjct: 509 LNIVHYGIGFITQSDIELANTFKAII 534


>DQ855484-1|ABH88171.1|  130|Apis mellifera chemosensory protein 3
          protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 11 KIIPIGLATWCYQCT 25
          +++P  LAT C +CT
Sbjct: 66 RVLPDALATDCKKCT 80


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 8/13 (61%), Positives = 11/13 (84%)

Query: 109 EIDVKRLNNTEAI 121
           E+D KRL+NTE +
Sbjct: 428 ELDGKRLSNTERL 440


>AJ973401-1|CAJ01448.1|  130|Apis mellifera hypothetical protein
          protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 11 KIIPIGLATWCYQCT 25
          +++P  LAT C +CT
Sbjct: 66 RVLPDALATDCKKCT 80


>AF481963-1|AAN59784.1|  130|Apis mellifera antennal-specific
          protein 3c precursor protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 11 KIIPIGLATWCYQCT 25
          +++P  LAT C +CT
Sbjct: 66 RVLPDALATDCKKCT 80


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 36  NWRGMGYLGNP 46
           NW+ M YLG P
Sbjct: 315 NWKMMMYLGTP 325


>DQ855487-1|ABH88174.1|  125|Apis mellifera chemosensory protein 6
          protein.
          Length = 125

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 11 KIIPIGLATWCYQC 24
          KI+P  L+T C +C
Sbjct: 62 KILPDALSTGCNKC 75


>DQ485318-1|ABF21077.1|  223|Apis mellifera icarapin variant 1
          precursor protein.
          Length = 223

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 6/17 (35%), Positives = 10/17 (58%)

Query: 17 LATWCYQCTAATPGCNE 33
          +A W   CT + PG ++
Sbjct: 9  IAAWFIACTHSFPGAHD 25


>AY939856-1|AAX33236.1|  223|Apis mellifera venom
          carbohydrate-rich protein precursor protein.
          Length = 223

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 6/17 (35%), Positives = 10/17 (58%)

Query: 17 LATWCYQCTAATPGCNE 33
          +A W   CT + PG ++
Sbjct: 9  IAAWFIACTHSFPGAHD 25


>AY897570-1|AAW81036.1|  223|Apis mellifera venom protein 2
          protein.
          Length = 223

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 6/17 (35%), Positives = 10/17 (58%)

Query: 17 LATWCYQCTAATPGCNE 33
          +A W   CT + PG ++
Sbjct: 9  IAAWFIACTHSFPGAHD 25


>AJ973402-1|CAJ01449.1|  125|Apis mellifera hypothetical protein
          protein.
          Length = 125

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 11 KIIPIGLATWCYQC 24
          KI+P  L+T C +C
Sbjct: 62 KILPDALSTGCNKC 75


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.138    0.440 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,038
Number of Sequences: 429
Number of extensions: 1610
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of query: 124
length of database: 140,377
effective HSP length: 51
effective length of query: 73
effective length of database: 118,498
effective search space:  8650354
effective search space used:  8650354
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.0 bits)
S2: 39 (19.8 bits)