GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000998-TA|BGIBMGA000998-PA|undefined
         (124 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    27   0.86 
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce...    25   2.6  
SPBC336.14c |ppk26||serine/threonine protein kinase Ppk26|Schizo...    24   6.1  
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy...    24   8.1  

>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 27.1 bits (57), Expect = 0.86
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 6/45 (13%)

Query: 66  VITRDCLSNFRAFRTDIPADTYEGCRPAAKDLNLAHYVNNSIKEI 110
           ++T   ++N   F + IP+   EGCRP   +L L   +++S KE+
Sbjct: 274 ILTLAYIANVEDFTSAIPSQRIEGCRP---ELRL---IDSSFKEL 312


>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1112

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 31  CNEPFNWRGMGYLGNPCPESEDVCVKLIERKGAQEVITRD 70
           C E     G+ Y+  P  E+E  C KL+E K    ++T D
Sbjct: 760 CQELLRLFGLPYIVAP-QEAEAQCSKLLELKLVDGIVTDD 798


>SPBC336.14c |ppk26||serine/threonine protein kinase
           Ppk26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 589

 Score = 24.2 bits (50), Expect = 6.1
 Identities = 7/16 (43%), Positives = 12/16 (75%)

Query: 15  IGLATWCYQCTAATPG 30
           IG ++W Y+CT++  G
Sbjct: 234 IGFSSWTYKCTSSIDG 249


>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 357

 Score = 23.8 bits (49), Expect = 8.1
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 11  KIIPIGLATWCYQCT-AATPGCNEPFNWRG 39
           K++PI L ++  QCT  + P  ++   W+G
Sbjct: 308 KLVPIDLVSFGLQCTYESMPVSSKDEEWKG 337


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.138    0.440 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 594,810
Number of Sequences: 5004
Number of extensions: 23342
Number of successful extensions: 35
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 33
Number of HSP's gapped (non-prelim): 4
length of query: 124
length of database: 2,362,478
effective HSP length: 65
effective length of query: 59
effective length of database: 2,037,218
effective search space: 120195862
effective search space used: 120195862
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 49 (23.8 bits)