GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000998-TA|BGIBMGA000998-PA|undefined
         (124 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0774 + 24504964-24507459                                         28   2.5  
07_03_1644 - 28338535-28339103,28339512-28340326,28341104-283412...    27   5.7  
11_04_0224 + 15059904-15059910,15059955-15060185,15060345-150604...    26   7.5  
11_04_0162 + 14291835-14292281,14292330-14292697,14292836-142930...    26   7.5  
02_03_0093 - 15120951-15121344,15121658-15121953,15122119-151224...    26   7.5  

>06_03_0774 + 24504964-24507459
          Length = 831

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 62  GAQEVITRDCLSNFRAFRTDIPADTYEGCRPAAKDLNLAHYVNNSIKEIDVKRLNNT 118
           GA   +   C SN+     +I    YEGCRPA    +    V NS  E ++ +L NT
Sbjct: 333 GADSRLDCACPSNYSFIDKNI---RYEGCRPAFAPQSCD--VVNSSAEFEITKLPNT 384


>07_03_1644 -
          28338535-28339103,28339512-28340326,28341104-28341205,
          28342469-28342594,28342782-28343071
          Length = 633

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 51 EDVCVKLIERKGAQEVITR--DCLSNFRAFRTDIPADTYEGCRP 92
          E +  K++ER  A E +++  +  +N  AF+  +P  TY+   P
Sbjct: 29 ELILTKILERNQATEYLSKFMNGSTNISAFKRHVPVVTYDKVHP 72


>11_04_0224 +
           15059904-15059910,15059955-15060185,15060345-15060424,
           15060497-15060547,15060548-15060670,15062151-15062184,
           15062363-15062441,15062779-15062848,15075787-15075889,
           15076247-15076284,15076449-15076550,15077027-15077107,
           15077506-15077657,15077731-15077857,15078193-15078311,
           15078636-15078749,15079001-15079214
          Length = 574

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 9/90 (10%)

Query: 40  MGYL-GNPCPES---EDVCVKLIERKGA-----QEVITRDCLSNFRAFRTDIPADTYEGC 90
           MGY+ GNP  +S   ED  +  +   G       E     C   + A        + +  
Sbjct: 272 MGYVAGNPVTDSQFDEDGKIPCLHGMGLISNELYEHAKETCRGKYSAPGNARCEQSIQAI 331

Query: 91  RPAAKDLNLAHYVNNSIKEIDVKRLNNTEA 120
           R   KD+N+ H +    +E+   R++NT A
Sbjct: 332 RNCTKDINMLHVLEPLCEEVWSPRIHNTSA 361


>11_04_0162 +
           14291835-14292281,14292330-14292697,14292836-14293050,
           14293090-14294129
          Length = 689

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 11/36 (30%), Positives = 17/36 (47%)

Query: 39  GMGYLGNPCPESEDVCVKLIERKGAQEVITRDCLSN 74
           G G+LGN CPE+ +  + +    G +       L N
Sbjct: 249 GTGHLGNDCPETREEAMYMGNNNGKKLAANDKILEN 284


>02_03_0093 -
          15120951-15121344,15121658-15121953,15122119-15122419,
          15123233-15123628,15123883-15124067
          Length = 523

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 9/30 (30%), Positives = 18/30 (60%)

Query: 41 GYLGNPCPESEDVCVKLIERKGAQEVITRD 70
          G+ GN CPE+ +  + L +   +  V+++D
Sbjct: 48 GHSGNDCPETREEAMPLCDHGASVSVMSKD 77


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.138    0.440 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,753,390
Number of Sequences: 37544
Number of extensions: 153108
Number of successful extensions: 319
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 317
Number of HSP's gapped (non-prelim): 5
length of query: 124
length of database: 14,793,348
effective HSP length: 74
effective length of query: 50
effective length of database: 12,015,092
effective search space: 600754600
effective search space used: 600754600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)