GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000998-TA|BGIBMGA000998-PA|undefined
         (124 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8164| Best HMM Match : rve (HMM E-Value=0.00069)                    28   2.6  
SB_62| Best HMM Match : Peptidase_M14 (HMM E-Value=2.7e-34)            27   3.4  
SB_42746| Best HMM Match : Gas_vesicle_C (HMM E-Value=6.1)             27   4.5  
SB_18257| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_5738| Best HMM Match : zf-CCHC (HMM E-Value=0.37)                   27   4.5  
SB_43059| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_12363| Best HMM Match : Lig_chan (HMM E-Value=2.5e-34)              27   5.9  
SB_18644| Best HMM Match : RVT_1 (HMM E-Value=0.033)                   26   7.8  

>SB_8164| Best HMM Match : rve (HMM E-Value=0.00069)
          Length = 1117

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 21/77 (27%), Positives = 32/77 (41%), Gaps = 1/77 (1%)

Query: 43  LGNPCPESEDVCVKLIERKGAQEVITRDCLSNFRAFRTDIPADTYEGCRPAAKDLNLAHY 102
           L + C    D C + +   GA ++ + DC +     RT+I ADT E              
Sbjct: 410 LEHACTMMSDECFESLLEGGAADIESLDCSTQPAEERTEI-ADTREKLAILVASGKSREM 468

Query: 103 VNNSIKEIDVKRLNNTE 119
           V  +    DVKR++  E
Sbjct: 469 VGKARTHDDVKRMSAEE 485


>SB_62| Best HMM Match : Peptidase_M14 (HMM E-Value=2.7e-34)
          Length = 235

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 24 CTAATPGCNEPFNWRGMGYLGNPCPES 50
          C  A P  N  F W G+G   +PC ++
Sbjct: 51 CYGADPNRNWSFKWGGVGTSSDPCRDT 77


>SB_42746| Best HMM Match : Gas_vesicle_C (HMM E-Value=6.1)
          Length = 365

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 55  VKLIERKGAQEVITR----DCLSNFRAFRTDIPADTYEGCRPAAKDLNLAHYVNNS 106
           +K ++RKG     TR    DCL  F     D+  +T E     AK+   A Y N S
Sbjct: 120 MKTVQRKGKHRRTTRAAQRDCLLEFETGLNDLLDNTIEDLIDTAKE-TFAKYKNKS 174


>SB_18257| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 463

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 22  YQCTAATPGCNEPFNWRGMGYLGNPCPESEDVCVKLIER-KGAQEVI 67
           +QC    PGCN   + +   + G  C     V  KL++R  G+Q+ +
Sbjct: 359 FQCLLRDPGCNNDKDCKYHAFKGCKCDGKTCVDNKLVDRGDGSQKKV 405


>SB_5738| Best HMM Match : zf-CCHC (HMM E-Value=0.37)
          Length = 700

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 55  VKLIERKGAQEVITR----DCLSNFRAFRTDIPADTYEGCRPAAKDLNLAHYVNNS 106
           +K ++RKG     TR    DCL  F     D+  +T E     AK+   A Y N S
Sbjct: 120 MKTVQRKGKHRRTTRAAQRDCLLEFETGLNDLLDNTIEDLIDTAKE-TFAKYKNKS 174


>SB_43059| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 722

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 3/40 (7%)

Query: 12  IIPIGLATWCYQCTAATPGCNEPFNWRGMGYLGNPCPESE 51
           ++P     + YQ +  TPGC E   W     + NP   SE
Sbjct: 611 LLPSNKNFYRYQGSLTTPGCQESVTW---SVMANPITVSE 647


>SB_12363| Best HMM Match : Lig_chan (HMM E-Value=2.5e-34)
          Length = 960

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 11/30 (36%), Positives = 12/30 (40%)

Query: 46  PCPESEDVCVKLIERKGAQEVITRDCLSNF 75
           PCP    VC+K I  K   E     C   F
Sbjct: 386 PCPSGASVCLKRIRAKDGSETDLARCCYGF 415


>SB_18644| Best HMM Match : RVT_1 (HMM E-Value=0.033)
          Length = 757

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 6   QYLKYKIIPIGLATWCYQCTAATPGCNEPFNWRGMGYL 43
           +Y K+ ++P GL++ C+  T       +   WR MG++
Sbjct: 305 RYFKFTVLPFGLSSACFCFTKFLRPLVK--RWRSMGHM 340


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.138    0.440 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,439,189
Number of Sequences: 59808
Number of extensions: 181652
Number of successful extensions: 327
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 324
Number of HSP's gapped (non-prelim): 8
length of query: 124
length of database: 16,821,457
effective HSP length: 74
effective length of query: 50
effective length of database: 12,395,665
effective search space: 619783250
effective search space used: 619783250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 55 (26.2 bits)