GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000998-TA|BGIBMGA000998-PA|undefined
         (124 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024806-1|AAF59524.1|  149|Caenorhabditis elegans Hypothetical ...    27   5.1  
U23168-7|AAC38808.1|  115|Caenorhabditis elegans Hypothetical pr...    26   6.8  
U23168-6|AAP86623.1|  114|Caenorhabditis elegans Hypothetical pr...    26   6.8  
DQ241300-1|ABB45864.1|  114|Caenorhabditis elegans TRX-1b protein.     26   6.8  
DQ241299-1|ABB45863.1|  115|Caenorhabditis elegans TRX-1a protein.     26   6.8  

>AC024806-1|AAF59524.1|  149|Caenorhabditis elegans Hypothetical
          protein Y52E8A.3 protein.
          Length = 149

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)

Query: 6  QYLKYKIIPIGL-ATWCYQCTAATPGCNEPF 35
          ++LK KII +   A+WC  C A TP   E F
Sbjct: 22 EHLKGKIIGLYFSASWCPPCRAFTPKLKEFF 52


>U23168-7|AAC38808.1|  115|Caenorhabditis elegans Hypothetical
          protein B0228.5a protein.
          Length = 115

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 18 ATWCYQCTAATPGCNE-PFNWRGMGYLGNPCPESEDVCVK 56
          ATWC  C A  P   E     +G+ +      E+ED+C K
Sbjct: 36 ATWCGPCKAIAPLYKELATTHKGIIFCKVDVDEAEDLCSK 75


>U23168-6|AAP86623.1|  114|Caenorhabditis elegans Hypothetical
          protein B0228.5b protein.
          Length = 114

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 18 ATWCYQCTAATPGCNE-PFNWRGMGYLGNPCPESEDVCVK 56
          ATWC  C A  P   E     +G+ +      E+ED+C K
Sbjct: 35 ATWCGPCKAIAPLYKELATTHKGIIFCKVDVDEAEDLCSK 74


>DQ241300-1|ABB45864.1|  114|Caenorhabditis elegans TRX-1b
          protein.
          Length = 114

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 18 ATWCYQCTAATPGCNE-PFNWRGMGYLGNPCPESEDVCVK 56
          ATWC  C A  P   E     +G+ +      E+ED+C K
Sbjct: 35 ATWCGPCKAIAPLYKELATTHKGIIFCKVDVDEAEDLCSK 74


>DQ241299-1|ABB45863.1|  115|Caenorhabditis elegans TRX-1a
          protein.
          Length = 115

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 18 ATWCYQCTAATPGCNE-PFNWRGMGYLGNPCPESEDVCVK 56
          ATWC  C A  P   E     +G+ +      E+ED+C K
Sbjct: 36 ATWCGPCKAIAPLYKELATTHKGIIFCKVDVDEAEDLCSK 75


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.138    0.440 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,234,225
Number of Sequences: 27539
Number of extensions: 133443
Number of successful extensions: 211
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 211
Number of HSP's gapped (non-prelim): 5
length of query: 124
length of database: 12,573,161
effective HSP length: 73
effective length of query: 51
effective length of database: 10,562,814
effective search space: 538703514
effective search space used: 538703514
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)