Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000997-TA|BGIBMGA000997-PA|IPR002048|Calcium-binding
EF-hand
(285 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 69 8e-13
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma... 50 5e-07
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 45 1e-05
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb... 42 1e-04
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 36 0.009
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ... 32 0.11
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 32 0.11
SPAC18B11.04 |ncs1||related to neuronal calcium sensor Ncs1|Schi... 29 0.58
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi... 29 1.0
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam... 28 1.3
SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|c... 28 1.3
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 28 1.3
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 27 3.1
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 27 3.1
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 27 4.1
SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces po... 27 4.1
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 4.1
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 5.4
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 26 7.1
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 26 7.1
SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr 1||... 26 7.1
SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces pomb... 26 7.1
SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr 2|... 26 7.1
SPAC824.07 |||hydroxyacylglutathione hydrolase |Schizosaccharomy... 25 9.4
SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces ... 25 9.4
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 25 9.4
SPAC17A5.18c |rec25|mug19|meiotic recombination protein Rec25|Sc... 25 9.4
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 68.9 bits (161), Expect = 8e-13
Identities = 43/146 (29%), Positives = 76/146 (52%), Gaps = 9/146 (6%)
Query: 107 LRPDQLAEVEQLWDVYQNYTPAYTDIDGYITEKELVYMLKSLLLMTYTPEQLEELIAYCV 166
L +Q+AE + + ++ D DG IT EL +++SL + T +L+++I
Sbjct: 6 LTDEQIAEFREAFSLFDR------DQDGNITSNELGVVMRSLG-QSPTAAELQDMINEV- 57
Query: 167 RPSHAEGHITFEQFLKMVTIRQRDFEIEDELRSSLQVFDPGRTGTIDREYFREVLAKQGH 226
+ G I F +FL M+ + +D + E+E+R + +VFD G I E VL G
Sbjct: 58 -DADGNGTIDFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGE 116
Query: 227 KMPQKQLDNLIKEVDMSNDGTIGIED 252
++ Q+++ ++I+E D DG I E+
Sbjct: 117 RLSQEEVADMIREADTDGDGVINYEE 142
Score = 34.3 bits (75), Expect = 0.020
Identities = 21/82 (25%), Positives = 33/82 (40%)
Query: 184 VTIRQRDFEIEDELRSSLQVFDPGRTGTIDREYFREVLAKQGHKMPQKQLDNLIKEVDMS 243
+T R E E R + +FD + G I V+ G +L ++I EVD
Sbjct: 1 MTTRNLTDEQIAEFREAFSLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDAD 60
Query: 244 NDGTIGIEDVVGTMCIDLNKED 265
+GTI + + M + D
Sbjct: 61 GNGTIDFTEFLTMMARKMKDTD 82
>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 176
Score = 49.6 bits (113), Expect = 5e-07
Identities = 32/142 (22%), Positives = 68/142 (47%), Gaps = 3/142 (2%)
Query: 116 EQLWDVYQNYTPAYTDIDGYITEKELVYMLKSLLLMTYTPEQLEELIAYCVRPSHAEGHI 175
EQ D+ + + +D D I EL +++L E L+ L + +G++
Sbjct: 34 EQRQDINEAFKLFDSDKDNAIDYHELRAAMRALGFNAEKSEVLKILRDF---DKTGKGYL 90
Query: 176 TFEQFLKMVTIRQRDFEIEDELRSSLQVFDPGRTGTIDREYFREVLAKQGHKMPQKQLDN 235
E F++++T + + + +E++ + ++FD TG I R V + + ++L+
Sbjct: 91 QMEDFVRVMTEKIVERDPLEEIKRAFELFDDDETGKISLRNLRRVAKELNENIDDQELEA 150
Query: 236 LIKEVDMSNDGTIGIEDVVGTM 257
+I+E D+ DG I ++ + M
Sbjct: 151 MIEEFDLDQDGEINEQEFIAIM 172
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 45.2 bits (102), Expect = 1e-05
Identities = 34/142 (23%), Positives = 66/142 (46%), Gaps = 7/142 (4%)
Query: 113 AEVEQLWDVYQNYTPAYTDIDGYITEKELVYMLKSLLLMTYTPEQLEELIAYCVRPSHAE 172
A EQ ++ + + D DG I + +L+SL + T +L +L +
Sbjct: 3 ASKEQTDEMKEAFVLYDIDKDGLIPTSHVGSVLRSLGI-NVTDAELAKL------SNELG 55
Query: 173 GHITFEQFLKMVTIRQRDFEIEDELRSSLQVFDPGRTGTIDREYFREVLAKQGHKMPQKQ 232
I ++F+ V+ + R+ E E+E + +VFD +G I+ F + + G K+ +
Sbjct: 56 DAIDEKKFMSFVSNKLRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNE 115
Query: 233 LDNLIKEVDMSNDGTIGIEDVV 254
+ +++E D +N G+ D V
Sbjct: 116 VQLMVQEADPTNSGSFDYYDFV 137
>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 141
Score = 41.9 bits (94), Expect = 1e-04
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 175 ITFEQFLKMVTIRQRDFEIE---DELRSSLQVFDPGRTGTIDREYFREVLAKQGHKMPQK 231
+ EQFL+++ R F++ +E QVFD TG I R VL G K+ +
Sbjct: 55 VDMEQFLQVLN-RPNGFDMPGDPEEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNE 113
Query: 232 QLDNLIKEVDMSNDGTIGIEDVV 254
++D L+K V + DG + D V
Sbjct: 114 EMDELLKGVPV-KDGMVNYHDFV 135
>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 174
Score = 35.5 bits (78), Expect = 0.009
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 173 GHITFEQFLKMVTIRQRDFEIEDELRSSLQVFDPGRTGTIDR-EYFREVLAKQGHKMPQK 231
G + F++F+ +++ E++L+ + +++D R G I E + + G + +
Sbjct: 71 GDVDFQEFINSLSVFSVHGNKEEKLKFAFKIYDIDRDGYISNGELYLVLKMMVGTNLRED 130
Query: 232 QL----DNLIKEVDMSNDGTIGIED 252
QL D I EVD DG I E+
Sbjct: 131 QLQQIVDKTIMEVDKDRDGKISFEE 155
Score = 32.7 bits (71), Expect = 0.062
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 131 DIDGYITEKELVYMLKSLLLMTYTPEQLEELIAYCVR--PSHAEGHITFEQFLKMVT 185
D DGYI+ EL +LK ++ +QL++++ + +G I+FE+F +V+
Sbjct: 105 DRDGYISNGELYLVLKMMVGTNLREDQLQQIVDKTIMEVDKDRDGKISFEEFKDIVS 161
>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1147
Score = 31.9 bits (69), Expect = 0.11
Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 5/55 (9%)
Query: 7 LPSSVIPTLSNTS---QKDNNIEG-SLEEKNTDHPDENRDNEEVLEATEAEGKGE 57
LPS V+PT SN+S Q N+ S + +NT+ D++ N + L + +A+ +GE
Sbjct: 465 LPSPVVPTRSNSSSILQPSYNLNSHSSDRRNTNDDDQSSLNSQQL-SNQAKAQGE 518
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 31.9 bits (69), Expect = 0.11
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 9 SSVIPTLSNTSQKDNNIEGSLEEKNTDHPDENRDNEEVLEATEAEGKG 56
SS TLS + K + EG+LE+ T +E DNE+ + E++ KG
Sbjct: 151 SSAQATLSFVASKPSQPEGNLEDIQTSSQEEEHDNEKD-KTKESKAKG 197
>SPAC18B11.04 |ncs1||related to neuronal calcium sensor
Ncs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 190
Score = 29.5 bits (63), Expect = 0.58
Identities = 27/146 (18%), Positives = 63/146 (43%), Gaps = 16/146 (10%)
Query: 120 DVYQNYTPAYTDI-DGYITEKELVYMLKSLLLMTYTPEQLEELIAYCVRPSHAEGHITFE 178
++ Q Y + D G++ + E + K P E + + V + G+I F+
Sbjct: 26 ELQQWYKGFFKDCPSGHLNKSEFQKIYKQFFPFG-DPSAFAEYV-FNVFDADKNGYIDFK 83
Query: 179 QFLKMVTIRQRDFEIEDELRSSLQVFDPGRTGTIDREYFREVL------------AKQGH 226
+F+ +++ R E+ D+L + Q++D G I + ++ +
Sbjct: 84 EFICALSVTSRG-ELNDKLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDE 142
Query: 227 KMPQKQLDNLIKEVDMSNDGTIGIED 252
P+K+++ + +D + DG + +E+
Sbjct: 143 DTPEKRVNKIFNMMDKNKDGQLTLEE 168
>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 606
Score = 28.7 bits (61), Expect = 1.0
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 218 REVLAKQGHKMPQKQLDNLIKEVDMSNDGTIGIEDVVGTMCIDLNKEDLM 267
R+ LA Q K ++ L N E+DM N G+ DV L E L+
Sbjct: 86 RKELALQALKHCRESLPNKSIEIDMGNQCASGLADVTVASVFSLKNERLL 135
>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 543
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/44 (29%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 178 EQFLKMVTIRQRDFE-IEDELRSSLQVFDPGRTGTIDREYFREV 220
+QFL+MV + R+FE + D++ + FD G+ ++ F+++
Sbjct: 135 KQFLEMVILHLRNFESVTDKMNQRIDKFD-GKFNSVIENSFKDI 177
>SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 449
Score = 28.3 bits (60), Expect = 1.3
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 2 EEEPALPSSVIPTLSNTSQKDN----NIEGSLEEKNTDHPDENRDNEEVLEATEAE 53
EEE PS + +SN QKD IE S EE ++H D+E + E E
Sbjct: 68 EEENGKPSQISAFISNGHQKDTLENPAIESSYEE--SEHARNVSDSESITSQEEEE 121
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 214 REYFREVLAKQGHKMPQKQLDNLIKEVDMSN 244
RE ++ + +Q + QKQLDN+ KE++M N
Sbjct: 1608 REILQKDVEEQVAQSHQKQLDNIRKELEMRN 1638
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 2 EEEPALPSSVIPTLSNTSQKDNNIEGSLEEKNTDHPDENRDNEEVLEATEAEGKGEK 58
E E +P S S+ D+ E S EE+ T+ +++ ++E +E+E + E+
Sbjct: 64 ESEVEVPKKKAVAASEDSESDS--ESSEEEEETESEEDSEVSDESESESESESESEE 118
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 2 EEEPALPSSVIPTLSNTSQKDNNIEGSLEEKNTD-HP 37
+E+P P++ IP S+ S++D +E + D HP
Sbjct: 296 DEDPTTPTNAIPIPSSMSKRDEALENDKDNYFDDLHP 332
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/64 (25%), Positives = 29/64 (45%)
Query: 185 TIRQRDFEIEDELRSSLQVFDPGRTGTIDREYFREVLAKQGHKMPQKQLDNLIKEVDMSN 244
+++ + +I+ L + PG E R+ L + G P + L L KEVD +
Sbjct: 91 SLQSDENDIKRRLNNEDSANAPGIGAFSTEELERQELIRTGKVTPFRNLSGLQKEVDFDD 150
Query: 245 DGTI 248
+ +I
Sbjct: 151 ESSI 154
>SPBC29A10.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 295
Score = 26.6 bits (56), Expect = 4.1
Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 177 FEQFLKMVTIRQRDFEIEDELRSSLQVFDPGRTGTIDREYFREVL 221
FE+F+ + +++ DF ++ + +Q F R +D + F +VL
Sbjct: 6 FERFVGLFSMKDEDFPYNSQVTNEIQTF---RKQQVDSQLFFDVL 47
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 114 EVEQLWDVYQNYTPAYTDIDG-----------YITEKELVYMLKSLLLMTYTPEQLE 159
E + +WDV+Q +T +G ++TE + + KS+ L+T+T E LE
Sbjct: 459 EQQAVWDVFQRIYTRFTGSEGSKESFIKLLEYFVTEPDNGKIQKSMQLLTHTLEALE 515
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.2 bits (55), Expect = 5.4
Identities = 14/52 (26%), Positives = 29/52 (55%)
Query: 1 MEEEPALPSSVIPTLSNTSQKDNNIEGSLEEKNTDHPDENRDNEEVLEATEA 52
++E+ +L S+ +LSN QK++++ + E D +R N ++E E+
Sbjct: 1413 LKEKESLIISLEESLSNQRQKESSLLDAKNELEHMLDDTSRKNSSLMEKIES 1464
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.8 bits (54), Expect = 7.1
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 22 DNNIEGSLEEKNTDHPDENRDN---EEVLEATEAEGKGEK 58
D+ I+ ++E N+ P EN D+ E L+ E EG K
Sbjct: 4062 DDEIQPDIQENNSQPPPENEDHLDLPEDLKLDEKEGDVSK 4101
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 22 DNNIEGSLEEKNTDHPDENRDNEEVLEATEAEGKGEK 58
+ IE +LEE +T++ ++ D+EE + E E + E+
Sbjct: 50 EQEIEEALEEDDTNYEEDIIDDEESAQVDEEELEEEE 86
>SPAC823.09c |||L-asparaginase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 285
Score = 25.8 bits (54), Expect = 7.1
Identities = 11/44 (25%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 221 LAKQGHKMPQKQLDNLIK--EVDMSNDGTIGIEDVVGTMCIDLN 262
L + H + ++ + IK E+ N + +D +G +C+D N
Sbjct: 142 LVPESHLITERSMKTQIKWKEILYQNPINLSSQDTIGVICVDKN 185
>SPBC1734.05c |spf31||DNAJ protein Spf31|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 209
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 36 HPDENRDNEEVLEATEAEGKGE 57
HPD+NRDN + +A + K E
Sbjct: 59 HPDKNRDNPKAADAFDILKKAE 80
>SPBPB10D8.02c |||arylsulfatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 554
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/41 (31%), Positives = 21/41 (51%)
Query: 98 KEALKEPFELRPDQLAEVEQLWDVYQNYTPAYTDIDGYITE 138
K L+ ++ PD L E+ + W VY+ T T D ++ E
Sbjct: 502 KGELENLAKVHPDILNELIEYWLVYEAETGVVTAPDDFVAE 542
>SPAC824.07 |||hydroxyacylglutathione hydrolase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 256
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 4 EPALPSSVIPTL-SNTSQKDNNIEGSLEEKNTDHPDENRDNEEVL 47
+PA P SVIP + T++K+ +++ L + H D NE++L
Sbjct: 34 DPAEPESVIPVIKEKTAKKEIDLQYILTTHH--HYDHAGGNEDIL 76
>SPCC645.08c |snd1||RNA-binding protein Snd1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 878
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 1 MEEEPALPSSVIPTLSNTSQKDNNIEGSLEEKNTDHPDENRDNEE--VLEATE 51
+++ A+ S VI T + +KDN +E ++ + HP + + E LEA E
Sbjct: 325 LKDYSAVVSRVISTDTLEVRKDNGVECRIQLSSIRHPRPSNEKEAPYQLEARE 377
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 5/36 (13%)
Query: 212 IDREYFREVLAKQGHKMPQKQLDNLIKEVDMSNDGT 247
IDREY R ++ G K L N IKE S D T
Sbjct: 962 IDREYHRYLIGPNGSK-----LQNTIKECGGSTDKT 992
>SPAC17A5.18c |rec25|mug19|meiotic recombination protein
Rec25|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 4/28 (14%)
Query: 20 QKDNNIEGSLEEKNTDHPDENRDNEEVL 47
QKDN +E EKNTD +N++ E V+
Sbjct: 45 QKDNVVE----EKNTDQNHQNQNQEGVI 68
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.311 0.133 0.372
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,221,336
Number of Sequences: 5004
Number of extensions: 49437
Number of successful extensions: 191
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 171
Number of HSP's gapped (non-prelim): 31
length of query: 285
length of database: 2,362,478
effective HSP length: 72
effective length of query: 213
effective length of database: 2,002,190
effective search space: 426466470
effective search space used: 426466470
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 53 (25.4 bits)
- SilkBase 1999-2023 -