GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000997-TA|BGIBMGA000997-PA|IPR002048|Calcium-binding
EF-hand
         (285 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          27   0.14 
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    26   0.33 
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               25   1.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   2.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   4.1  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    22   7.1  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    22   7.1  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   7.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.4  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    21   9.4  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 13/36 (36%), Positives = 19/36 (52%)

Query: 2  EEEPALPSSVIPTLSNTSQKDNNIEGSLEEKNTDHP 37
          EE   LP  V  T+S+  Q   ++EGS +  + D P
Sbjct: 40 EEVDPLPFGVENTISSVPQPPRSLEGSYDSSSGDSP 75


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 16/71 (22%), Positives = 39/71 (54%), Gaps = 3/71 (4%)

Query: 186 IRQRDFEIEDELRSSLQVFDPGRTGTIDREYFREVLAKQGHKMPQKQLDNLIKEV-DMSN 244
           I Q D E+ +  ++ +  F+   T  I  E  ++ ++ + + +  K +DN+ KE+ D+  
Sbjct: 519 ITQSDIELANTFKAIIYGFNVNATKQIKDEANKKGVSLRFYNVVYKLIDNIKKEIYDILP 578

Query: 245 DGTIGIEDVVG 255
           +  + +E+++G
Sbjct: 579 E--VDVEEILG 587


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 11/89 (12%)

Query: 175 ITFEQFLKMVTIRQRDFEIEDELRSSLQVFDPGRTGTIDREYFREVLAKQGHKMPQKQLD 234
           +TF+ F+KM  + Q +   E  ++  L  +    T  +++ +  +          + QLD
Sbjct: 46  LTFKDFIKMQELLQEEDISEGNIKKYLTNYSCFITCALEKSHIIQ--------NDEIQLD 97

Query: 235 NLIKEVDMSNDGTIGIEDVVGTMCIDLNK 263
            L   V+M+N   I I+  + + CI+ NK
Sbjct: 98  KL---VEMANRKNISIDVKMLSECINANK 123


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 19  SQKDNNIEGSLEEKNTDHPDENRDNEEV 46
           S  D N  G+LE +  +   EN D EE+
Sbjct: 243 SHYDRNNNGNLEREELEQFAENEDLEEL 270


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 13/45 (28%), Positives = 24/45 (53%), Gaps = 3/45 (6%)

Query: 9   SSVIPTLSNTSQKDNNIEGSLEEKNTDHPDENRDNEEVLEATEAE 53
           ++ IPT     ++ N+ EG+    + D  +EN + E+    +EAE
Sbjct: 258 TTTIPTRRLRKRRQNDGEGA---DDRDDDEENEEEEDGRGQSEAE 299


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/40 (25%), Positives = 21/40 (52%)

Query: 2   EEEPALPSSVIPTLSNTSQKDNNIEGSLEEKNTDHPDENR 41
           E E +    +I +LSN +  +NN + +    N ++ + N+
Sbjct: 71  ERERSREPKIISSLSNNTIHNNNYKYNYNNNNYNNNNYNK 110


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/40 (25%), Positives = 21/40 (52%)

Query: 2   EEEPALPSSVIPTLSNTSQKDNNIEGSLEEKNTDHPDENR 41
           E E +    +I +LSN +  +NN + +    N ++ + N+
Sbjct: 71  ERERSREPKIISSLSNNTIHNNNYKYNYNNNNYNNNNYNK 110


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/46 (26%), Positives = 23/46 (50%)

Query: 2   EEEPALPSSVIPTLSNTSQKDNNIEGSLEEKNTDHPDENRDNEEVL 47
           E E +    +I +LSN +  +NN   +    N ++ + N +N + L
Sbjct: 72  ERERSREPKIISSLSNKTIHNNNNYNNNNYNNYNYNNNNYNNYKKL 117


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 11/54 (20%), Positives = 26/54 (48%)

Query: 227 KMPQKQLDNLIKEVDMSNDGTIGIEDVVGTMCIDLNKEDLMMLRASVYPPDEPP 280
           +M    + +LI + D+       ++ +VG + +D   E+ + + +   P D+ P
Sbjct: 110 RMKHGLIRDLIVDRDVPTWEVNILKSIVGQLQVDTQGENAVKVNSVQVPTDDEP 163


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/32 (28%), Positives = 19/32 (59%)

Query: 132 IDGYITEKELVYMLKSLLLMTYTPEQLEELIA 163
           +D ++   E++  L  +++M Y+P  +  LIA
Sbjct: 265 VDFFMILNEIIMKLVGIIIMWYSPFGIMCLIA 296


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.133    0.372 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,795
Number of Sequences: 429
Number of extensions: 2933
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 10
length of query: 285
length of database: 140,377
effective HSP length: 57
effective length of query: 228
effective length of database: 115,924
effective search space: 26430672
effective search space used: 26430672
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 43 (21.4 bits)