GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000996-TA|BGIBMGA000996-PA|undefined
         (127 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    27   0.91 
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    25   4.8  
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ...    24   6.4  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    24   6.4  
SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces po...    24   6.4  

>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 27.1 bits (57), Expect = 0.91
 Identities = 14/34 (41%), Positives = 19/34 (55%)

Query: 10 VLAISYLKVEISCLSRRCIQCRSRGELGSCGDPL 43
          V+   YL+ +I C SR C  CRS+    S G+ L
Sbjct: 33 VVREQYLRNDIPCQSRACPLCRSKLPKDSRGNVL 66


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 24.6 bits (51), Expect = 4.8
 Identities = 8/28 (28%), Positives = 15/28 (53%)

Query: 15  YLKVEISCLSRRCIQCRSRGELGSCGDP 42
           + ++  SC ++  +QC      GSC +P
Sbjct: 299 FCELGTSCKNQHILQCTDYAMFGSCNNP 326


>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 782

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)

Query: 82  YGAVTERSCL-QQPPSDYEE 100
           YGA + RSC+ QQ P+  EE
Sbjct: 150 YGASSSRSCIPQQDPNSEEE 169


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 79  TDDYGAVTERSCLQQPPSDYEERCAYTMWKYKRVYVCF 116
           TD+YG  TE   L++  S  +E C      +K VY  F
Sbjct: 269 TDEYGTATETKALEEGVSP-KELCDKYHALHKEVYDWF 305


>SPBC1198.02 |dea2||adenine deaminase Dea2|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 367

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 14/42 (33%), Positives = 17/42 (40%)

Query: 50 PEAEHGVHITACPSGWCAKRIQGTTGTFRTDDYGAVTERSCL 91
          P+ EH VH+  C S     R+    G     D  A T  S L
Sbjct: 14 PKCEHHVHLEGCLSPDLVFRLAKKNGITLPSDDAAYTTPSTL 55


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.138    0.458 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 609,516
Number of Sequences: 5004
Number of extensions: 22855
Number of successful extensions: 52
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 49
Number of HSP's gapped (non-prelim): 5
length of query: 127
length of database: 2,362,478
effective HSP length: 65
effective length of query: 62
effective length of database: 2,037,218
effective search space: 126307516
effective search space used: 126307516
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 49 (23.8 bits)