Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000996-TA|BGIBMGA000996-PA|undefined
(127 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0510 + 4042321-4042411,4044653-4044723,4044985-4046106 29 0.86
10_05_0050 + 8565612-8566523 29 0.86
02_02_0656 - 12683240-12683409,12684309-12684444 29 1.5
03_05_0062 + 20370608-20370977,20371062-20371541,20371661-203717... 28 2.0
05_05_0096 - 22351488-22351742 27 3.5
01_01_1023 - 8070122-8070808 27 3.5
10_08_0468 - 18146369-18146701,18147267-18147467,18147525-181477... 27 4.6
07_03_1237 + 25073010-25073513 27 6.1
02_05_0756 - 31534011-31534141,31534235-31535338,31535448-315356... 27 6.1
03_02_0848 + 11765607-11766143 26 8.0
01_06_0812 + 32161218-32161540,32161732-32161843,32162017-321621... 26 8.0
>12_01_0510 + 4042321-4042411,4044653-4044723,4044985-4046106
Length = 427
Score = 29.5 bits (63), Expect = 0.86
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 11/62 (17%)
Query: 22 CLSRRCIQCRSRGELGSCGDP--LPFNISDPE---------AEHGVHITACPSGWCAKRI 70
C+ RC GELG C + P ++S P G ++ P GW A+RI
Sbjct: 5 CVWLRCTAREGSGELGGCAESRRAPADLSVPRYGRKRGRLMVSPGEYLWEIPGGWAAQRI 64
Query: 71 QG 72
G
Sbjct: 65 GG 66
>10_05_0050 + 8565612-8566523
Length = 303
Score = 29.5 bits (63), Expect = 0.86
Identities = 16/74 (21%), Positives = 31/74 (41%)
Query: 3 LEVLLTTVLAISYLKVEISCLSRRCIQCRSRGELGSCGDPLPFNISDPEAEHGVHITACP 62
+E+LL L ++ + + ++ ++ + G P PF I + HG ++
Sbjct: 1 MELLLLVFLLLAAMSAAVESITSTAVKTGCQERCGGVDIPYPFGIGPGCSRHGFELSCVS 60
Query: 63 SGWCAKRIQGTTGT 76
+G A I GT
Sbjct: 61 NGSGAGPIAVLAGT 74
>02_02_0656 - 12683240-12683409,12684309-12684444
Length = 101
Score = 28.7 bits (61), Expect = 1.5
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 94 PPSDYEERCAYTMWKYK 110
PPS Y++RCA+ W +K
Sbjct: 11 PPSRYDDRCAWPPWVFK 27
>03_05_0062 +
20370608-20370977,20371062-20371541,20371661-20371731,
20371836-20371912,20372076-20372223,20372346-20372507,
20372743-20372940
Length = 501
Score = 28.3 bits (60), Expect = 2.0
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 43 LPFNISDPEAEHGVH-ITACPSGWCAKRIQGTTGTFRTDDYGAVT 86
+P ++ PE + TA PSG + GTT F D+ AVT
Sbjct: 121 VPERVASPEVYQPSNGPTASPSGTSSYEFSGTTSWFTYDELAAVT 165
>05_05_0096 - 22351488-22351742
Length = 84
Score = 27.5 bits (58), Expect = 3.5
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 66 CAKRIQGTTGTFRTDDYGAVTERSCLQQPP--SDYEERCAYTMWKYK-RVYV 114
C KRI T G G+ + SC PP S + RCA + + + R+Y+
Sbjct: 16 CKKRIGRTAGAGSEAGNGSRHQASCSPPPPPSSSFPRRCARLVKEQRARLYI 67
>01_01_1023 - 8070122-8070808
Length = 228
Score = 27.5 bits (58), Expect = 3.5
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 80 DDYGAVTERSCLQQPPSDYEERCAYTM 106
D +G R C QPP ++RC + +
Sbjct: 194 DVHGVTRRRRCGAQPPQQQQQRCGWAL 220
>10_08_0468 -
18146369-18146701,18147267-18147467,18147525-18147773,
18148058-18148090
Length = 271
Score = 27.1 bits (57), Expect = 4.6
Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 2/71 (2%)
Query: 52 AEHGVHITACPSGWCAKRIQGTTGTFRTDDYGAVTERSCLQQPPSDYEERCAYTMWKYKR 111
A++G+H A + + G T T V Q D C +WKY
Sbjct: 57 ADYGIHDPATEMEIFVRGLMGNTRTLWVKPSDTVKSVKGWQLKDGDTLASCG--IWKYSN 114
Query: 112 VYVCFCNGDLC 122
+ +C+ D C
Sbjct: 115 MNLCYHFADSC 125
>07_03_1237 + 25073010-25073513
Length = 167
Score = 26.6 bits (56), Expect = 6.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 16 LKVEISCLSRRCIQCRSRGELGSC 39
L + + SRRC+ CR + G C
Sbjct: 80 LTLSVLTASRRCVACRETSDAGRC 103
>02_05_0756 -
31534011-31534141,31534235-31535338,31535448-31535692,
31535789-31535940,31536051-31536158
Length = 579
Score = 26.6 bits (56), Expect = 6.1
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 31 RSRGELGSCGDPLPFNISDPEAEHGVHITACPSGWCAKRIQ 71
R G DP +N+ DP ++ V + SGW A R +
Sbjct: 494 RGNGTFDESRDPATYNLVDPPFQNTVSVPR--SGWAAIRFR 532
>03_02_0848 + 11765607-11766143
Length = 178
Score = 26.2 bits (55), Expect = 8.0
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 19 EISCLSRRCIQCRSRGELGSCGDPLPFNISDPEAEHGVHITACPSGWCAKRIQG 72
E + R C C +LGS L + D +EHG ++ CP C RI G
Sbjct: 42 EFGVVERTC-PCLET-DLGSKKASLECSTDDDSSEHGGIVSICP---CMDRISG 90
>01_06_0812 +
32161218-32161540,32161732-32161843,32162017-32162176,
32162589-32162737,32162832-32162983,32163744-32163858,
32163956-32164093
Length = 382
Score = 26.2 bits (55), Expect = 8.0
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 7/50 (14%)
Query: 40 GDPLPFNISDPEAEHGVHITACPSGWCAKRIQGTTGTFRTDDYGAVTERS 89
G + FNI+D EAEH + I K G R DDY V + S
Sbjct: 165 GSAVLFNIADHEAEHYLDI-------IRKHASGWLPEMRKDDYAVVEKPS 207
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.324 0.138 0.458
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,297,827
Number of Sequences: 37544
Number of extensions: 175211
Number of successful extensions: 394
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 11
length of query: 127
length of database: 14,793,348
effective HSP length: 74
effective length of query: 53
effective length of database: 12,015,092
effective search space: 636799876
effective search space used: 636799876
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 55 (26.2 bits)
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