GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000996-TA|BGIBMGA000996-PA|undefined
         (127 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g20680.1 68418.m02456 expressed protein predicted proteins, A...    27   3.9  
At5g58370.2 68418.m07309 expressed protein                             27   5.1  
At5g58370.1 68418.m07308 expressed protein                             27   5.1  
At5g54050.1 68418.m06722 DC1 domain-containing protein                 26   8.9  
At3g02210.1 68416.m00202 phytochelatin synthetase family protein...    26   8.9  

>At5g20680.1 68418.m02456 expressed protein predicted proteins,
           Arabidopsis thaliana
          Length = 551

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 44  PFNISDPEAEHGVHITACPS 63
           P NI+DP  EH +H+   P+
Sbjct: 355 PLNITDPATEHAMHLDRPPA 374


>At5g58370.2 68418.m07309 expressed protein
          Length = 465

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 51 EAEHGVHITACP-SGWCA-KRIQGTTGTFRTDDYGAVT 86
          +A+H  H+   P + W A KR QG+T +F+T +  A +
Sbjct: 60 KAKHNNHVNEIPRTMWVASKRNQGSTSSFKTANDAATS 97


>At5g58370.1 68418.m07308 expressed protein
          Length = 446

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)

Query: 51 EAEHGVHITACP-SGWCA-KRIQGTTGTFRTDDYGAVT 86
          +A+H  H+   P + W A KR QG+T +F+T +  A +
Sbjct: 60 KAKHNNHVNEIPRTMWVASKRNQGSTSSFKTANDAATS 97


>At5g54050.1 68418.m06722 DC1 domain-containing protein 
          Length = 580

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 10/37 (27%), Positives = 18/37 (48%)

Query: 15  YLKVEISCLSRRCIQCRSRGELGSCGDPLPFNISDPE 51
           + + E+  +  RC  C     +G   +P P  IS+P+
Sbjct: 124 FCRFEVHHMFLRCTICNISLHIGCVAEPPPLTISEPK 160


>At3g02210.1 68416.m00202 phytochelatin synthetase family protein /
           COBRA cell expansion protein COBL3 similar to
           phytochelatin synthetase [Hordeum vulgare subsp.
           vulgare] GI:29570314; identified in Roudier, et al,
           Plant Phys. (2002) 130:538-548 (PMID:12376623);
           supported by cDNA: gi|26452134|dbj|AK118555.1; contains
           Pfam profile PF04833: Phytochelatin synthetase-like
           conserved region
          Length = 452

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 11  LAISYLKVEISCLSRRCIQCRSRGELGSCGDPLPFNISDPEAEHGVHITACPSGWCAKRI 70
           L+  Y K  +SC +  C  CR+  + G+C DP    I+      G +    P   C K +
Sbjct: 234 LSSFYNKTIVSCPTCSC-GCRNTSQPGNCVDPKGPRIASVIPNPGKNAYIPPLVQCTKHM 292


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.324    0.138    0.458 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,368,544
Number of Sequences: 28952
Number of extensions: 132898
Number of successful extensions: 290
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 288
Number of HSP's gapped (non-prelim): 5
length of query: 127
length of database: 12,070,560
effective HSP length: 73
effective length of query: 54
effective length of database: 9,957,064
effective search space: 537681456
effective search space used: 537681456
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 54 (25.8 bits)