Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000995-TA|BGIBMGA000995-PA|IPR000156|RanBP1
         (212 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    27   0.17 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    25   0.53 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    24   0.93 
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              21   8.7  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              21   8.7  

>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 26/112 (23%), Positives = 51/112 (45%), Gaps = 7/112 (6%)

Query: 35  KDILEKRVIKTAKRRTTAPTDESSPSSDGSPLKFGAPSLTSTNTNNTEPANQEDEDVPPK 94
           + I+  R  + +KR +++  D  SPSS  SP    +PSL ++  +      +   +    
Sbjct: 14  RKIIRSRSRRYSKRFSSSIVDRRSPSSSRSP----SPSLLTSQPHQDHNKEKSKNNHHCN 69

Query: 95  VEFTPIAEENSVFDKRCKVFVKKDGNF-VDKGVGTLYIKKIENSDKHQLLVR 145
            +   + +     D   +V  KK+ NF VD+    L+  + EN +K  + ++
Sbjct: 70  QDTEKLNQLEIESDNSKEVNDKKEENFIVDRLRNDLF--ECENKEKSNVCLK 119


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 6/71 (8%)

Query: 48  RRTTAPTDESSPSSDGSPLKFGAPSLTSTNTNNTEPANQED---EDVP---PKVEFTPIA 101
           R+  +P+D    S    P K  + S +S  T+       ED   ED+P     ++  P+ 
Sbjct: 572 RKLDSPSDSGIESGTEKPDKPASSSASSAPTSVCSSPRSEDKEVEDMPVLKRVLQAPPLY 631

Query: 102 EENSVFDKRCK 112
           + NS+ D+  K
Sbjct: 632 DTNSLMDEAYK 642


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.2 bits (50), Expect = 0.93
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 36  DILEKRVIKTAKRRTTAPTDESSPSSDGSPLKFGAPSL-TSTNTNNTEPANQEDED 90
           D+ E+RV KTA       +D S  SS+   LK    +L T  +++++  ++ E+ D
Sbjct: 331 DVEERRVSKTAMNSNQIVSDNSLSSSE-EKLKQDILNLRTDISSSSSSISSSEEND 385


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 3  VKRQATTDLNHENWDQEDPEENK 25
          + +Q   D+N  N+D ED +  +
Sbjct: 39 IDQQTVDDINEVNFDVEDEKPQR 61


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 3  VKRQATTDLNHENWDQEDPEENK 25
          + +Q   D+N  N+D ED +  +
Sbjct: 39 IDQQTVDDINEVNFDVEDEKPQR 61


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.309    0.128    0.360 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 69,083
Number of Sequences: 429
Number of extensions: 3227
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 212
length of database: 140,377
effective HSP length: 55
effective length of query: 157
effective length of database: 116,782
effective search space: 18334774
effective search space used: 18334774
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 42 (21.0 bits)