Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000995-TA|BGIBMGA000995-PA|IPR000156|RanBP1
(212 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 54 2e-08
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 34 0.018
SPBC428.07 |meu6||meiotic chromosome segregation protein Meu6|Sc... 33 0.024
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 32 0.072
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 30 0.22
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 30 0.29
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 29 0.51
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 28 1.2
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 27 1.6
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 27 2.1
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc... 27 2.1
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 27 2.1
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 27 2.1
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 27 2.7
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 26 3.6
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 26 4.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 4.7
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac... 26 4.7
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 26 4.7
SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces ... 25 6.3
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 25 6.3
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 25 6.3
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 25 6.3
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po... 25 6.3
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 25 6.3
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc... 25 6.3
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 8.3
SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po... 25 8.3
SPBC947.08c |||histone promoter control protein Hpc2 |Schizosacc... 25 8.3
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 25 8.3
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 25 8.3
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 53.6 bits (123), Expect = 2e-08
Identities = 50/170 (29%), Positives = 76/170 (44%), Gaps = 8/170 (4%)
Query: 46 AKRRTTAPTDESSPSSDGSPLKFGAPSLTSTNTNNTEPANQEDEDVPPKVEFTPIAEEN- 104
A +++ PT S+P+S G+ + + E N E V EEN
Sbjct: 394 AAPKSSFPTS-STPASVGAEKSEETSNGNKSEQEEKENGNDETRSNDSLVSGKGKGEENE 452
Query: 105 -SVFDKRCKV--FVKKDGNFVDKGVGTLYIKKIENSDKHQLLVRANTALGNILLNLRLSA 161
SVF+ R K+ F ++ D G+G L I ++ ++L R + G +LLN+RL
Sbjct: 453 DSVFETRAKIYRFDATSKSYSDIGIGPLKINVDRDTGSARILARVEGS-GKLLLNVRLCQ 511
Query: 162 GIPTQRMGKNNVMIICIPTPDSKPPPTSVLIRVKTPEEADEVLETLNKYK 211
GK +V + T D K LIRVK P A+++L LN+ K
Sbjct: 512 DFEYSLAGKKDVKVPAAST-DGKSIEM-YLIRVKEPSTAEKLLAELNEKK 559
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 33.9 bits (74), Expect = 0.018
Identities = 23/99 (23%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
Query: 9 TDLNHENWDQEDPEENKEMGTFKAAPKDILEKRVIKTAKRRTTAPTDESSPSSDGSPLKF 68
++++ EN Q E NKE G F + D + K + + + T A ++++ + D S +
Sbjct: 66 SNMHLENQFQHFHEPNKESGAFGSYKNDDVAKEIESSKNQETDAKSEQAPFTEDASSSNY 125
Query: 69 GAPSLTSTNTNNTEPAN--QEDEDVPPKVEFTPIAEENS 105
+ T + P N +PP IA + S
Sbjct: 126 AHHRSADSQTKSALPPNVPASSSPLPPMSIAMNIARKRS 164
>SPBC428.07 |meu6||meiotic chromosome segregation protein
Meu6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 651
Score = 33.5 bits (73), Expect = 0.024
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 4/91 (4%)
Query: 14 ENWDQEDPEENKEMGTFKAAPKDILEKRVIKTAKRRTTAPTDESSPSSDGSPLKFGAPSL 73
+N DP + P++ E I T + A T+E +P+S+ P P+
Sbjct: 354 DNETSADPVDTTVEAQSVEVPEN--ETNQIPTTEEHFPATTEEVAPASEEKPAT--GPAE 409
Query: 74 TSTNTNNTEPANQEDEDVPPKVEFTPIAEEN 104
ST+T N E A+ ++++ P + EE+
Sbjct: 410 ESTSTQNVEQASTQNDNGTPIGQIADAIEED 440
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 31.9 bits (69), Expect = 0.072
Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 10/103 (9%)
Query: 25 KEMGTFKAAPKDILEKRV-IKTAKRRT------TAPTDESS-PSSDGSPLKFGAPSLTST 76
+E GT +P+ + R + K TAP + + P S SP + P+ ST
Sbjct: 630 QEQGTGSLSPQSYMNSRYSVDVGKEHMSMIPNQTAPMIQPNVPVSANSPAQANTPAADST 689
Query: 77 NTNNTEPANQEDEDV--PPKVEFTPIAEENSVFDKRCKVFVKK 117
+ +P N+ E + P +F+P A + + FV +
Sbjct: 690 KSGTIQPTNRNGEGLSYSPHQQFSPSAPQAEKLSRSMSPFVSQ 732
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 30.3 bits (65), Expect = 0.22
Identities = 16/62 (25%), Positives = 27/62 (43%)
Query: 31 KAAPKDILEKRVIKTAKRRTTAPTDESSPSSDGSPLKFGAPSLTSTNTNNTEPANQEDED 90
+A P L +R++ AP SSP S ++ PS ST+ ++ + +D
Sbjct: 6 EAMPLVTLSERMVPQVNTSPFAPAQSSSPLPSNSCREYSLPSHPSTHNSSVAYVDSQDNK 65
Query: 91 VP 92
P
Sbjct: 66 PP 67
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 29.9 bits (64), Expect = 0.29
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 163 IPTQRMGKNNVMIICIPTPDSKPPPTSVLIRVKTPEEADEVLETLNKYK 211
IP + G+ + + P P + T + ++ K EE DE+LE + K
Sbjct: 175 IPRRSRGRTSSKSLSPPAPQDESQGTEINLKQKIEEENDEILEDSKESK 223
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 29.1 bits (62), Expect = 0.51
Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 17 DQEDPEE-NKEMGTFKAAPKDILEKRVIKTAKRRTTAPTDESSPSSDGS-----PLKFGA 70
++ED E K K K K K+A ++ + TD+S P S P K
Sbjct: 100 EEEDFNEIAKPSPKHKRVSKANGSKNGAKSAVKKEESDTDDSVPLRAVSTVSLTPYKSEL 159
Query: 71 PSLTSTNTNNTEPANQEDED 90
PS ST T N P ++EDED
Sbjct: 160 PSGAST-TQNRSPNDEEDED 178
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 27.9 bits (59), Expect = 1.2
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 70 APSLTSTNT--NNTEPANQEDEDVPPKVEFTPIAEENSVFD 108
AP+ ++TNT NT P N + P P+A E + D
Sbjct: 234 APNRSATNTPVENTHPENPDSNTSTPTTRSEPLAGEGASID 274
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 58 SPSSDGSPLKFGAPSLTSTNTNNTEPANQEDEDVPPKVEFTPI 100
SPS+D + ++ S NNT P N + ED P P+
Sbjct: 134 SPSADQT-VQPQPGSTNQQQQNNTNPINNQPEDTKPNTNSPPV 175
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 10 DLNHENWDQEDPEENKEMGTFKAAPKDIL 38
D +HEN D + EN E KAA K +L
Sbjct: 53 DNDHENLDSNNNNENNEAFNEKAAEKKLL 81
>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 27.1 bits (57), Expect = 2.1
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 9/96 (9%)
Query: 34 PKDILEKRVIKTAKRRTTAPTDE--SSPSSDGSPLKFGAPSLTSTN--TNNTEPANQEDE 89
PK L + +++ A++ T +P DE S PSS S L + N + +T P Q
Sbjct: 138 PKKQLVRDILEKARQHTISPLDEQDSGPSSLASSWASVGQRLGTENEASGSTTPVTQSG- 196
Query: 90 DVPPKVEFTPIAEENSVFDKRCKVFVKKDGNFVDKG 125
PP+ P E R ++ ++G VD G
Sbjct: 197 --PPRE--NPPTESQPEKPLRRTLYFWRNGFSVDDG 228
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 54 TDESSPSSDGSPLKFGAPSLTSTNTNNTEPANQEDED 90
T SSP+ SP + N N+ + N+E+E+
Sbjct: 297 TQLSSPNKSSSPTSIEISDFSKNNENHDQSENKEEEE 333
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 27.1 bits (57), Expect = 2.1
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 34 PKDILEKRVIKTAKRRTTAP--TDESSPSSDGSPLKFGAPSLTSTNTNNTEPANQEDED 90
P+DIL ++ ++A ++ +P+S G P + S N N +P+N +D
Sbjct: 187 PEDILNRQREESAAALAAQQQQSEALAPTSTGQPANLFEQAALSENENQEQPSNTVGDD 245
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 5/33 (15%)
Query: 52 APTDESSPSSDGSPLKFGAPSLTSTNTNNTEPA 84
A T S+ +S SP FG STNTNNT A
Sbjct: 74 ATTGNSTNASTSSPFSFG-----STNTNNTAGA 101
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/83 (19%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 53 PTDESSPSSDGSPLKFGAPSLTSTNTNNTEPANQEDEDVPPKVEFTPIAEENSVF--DKR 110
P ++ S D +P G +++ ++ ED+P +E+ + +N VF +
Sbjct: 442 PKEDLWASQDTAPASSGMTIGPTSSLSDDLQVRFPSEDIPKFIEYVRNSHDNKVFLIENL 501
Query: 111 CKVFVKKDGNFVDKGVGTLYIKK 133
+F N + + +G + ++K
Sbjct: 502 RHMFPYVTKNIISETLGKVAVRK 524
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 25.8 bits (54), Expect = 4.7
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 2/74 (2%)
Query: 9 TDLNHENWDQEDPEENKEMGTFKAAPKDILEKRVIKTAKRRTTAPTDESSPSSDGSPLKF 68
T+L N + P E + A P + +T+ T PT S+P+ D P
Sbjct: 364 TNLLPPNMEMPQPFEIPVIAKTSALPNPFISFPSFQTSYETTVTPTPTSTPTID--PCNL 421
Query: 69 GAPSLTSTNTNNTE 82
+L NT+
Sbjct: 422 FVKNLDDNIVGNTQ 435
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 34 PKDILEKRVIKTAKRRTTAPTDESSPSSDGSPLKFGAPSLTSTNTNNTEPANQE 87
P E + T + +P +SPS S + AP+ TS + + ++ E
Sbjct: 1240 PAPSSEAPSVSTPRSSVPSPHSNASPSPTSSSMASAAPARTSVSRSKSKAERHE 1293
>SPBC216.01c ||SPBC713.13c|DNA damage response protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 836
Score = 25.8 bits (54), Expect = 4.7
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 2/87 (2%)
Query: 75 STNTNNTEPANQEDEDVPPKVEFTPIAEENSVFDKRCKVFVKKDGNFVDKGVGTLYIKKI 134
+ N + E+E++ + E +R KV+ +D N+VD G G KI
Sbjct: 11 NNNIDEISDGENEEEELDEAIAAALQKIEVPSIPRRVKVYEMEDENWVDCGTG-YCDGKI 69
Query: 135 ENSDKHQLLVRANTALGNILLNLRLSA 161
E + +VR+ ILL +L A
Sbjct: 70 EGPLAY-FIVRSEADNETILLKTQLIA 95
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 25.8 bits (54), Expect = 4.7
Identities = 18/85 (21%), Positives = 31/85 (36%)
Query: 108 DKRCKVFVKKDGNFVDKGVGTLYIKKIENSDKHQLLVRANTALGNILLNLRLSAGIPTQR 167
D C +FVKK+G+ + + T +KK + + +A A R +A +
Sbjct: 49 DANCTIFVKKNGSEEFEPITTNALKKAKKGVEQAAKKKAKAAEAEAAAAARAAAAKEAEA 108
Query: 168 MGKNNVMIICIPTPDSKPPPTSVLI 192
I + P P + I
Sbjct: 109 KRLEAAKNIVLKEPKDAPAAKKIAI 133
>SPCC548.07c |ght1||hexose transporter Ght1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 557
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 34 PKDILEKRVIKTAKRRTTAPTDESSPSSDGSPLKFGAPSLTSTNTNNT-EPANQED 88
PK++ E K +R T P ES+ + + + L+S+ N+ EP ++D
Sbjct: 478 PKNLSEMAEAKEVEREETRPKGESARYLEHADSNSDSEDLSSSANNDVHEPVARQD 533
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 19 EDPEENKEMGTFKAAPKDILEKRVIKTAKRRTTAPTDESSPSSDGSPLK 67
E+ EE E A+ +D L+ K A+ + DES SP K
Sbjct: 154 EESEEESESEDNSASEEDELDSAPAKKAQVKKKRTKDESEQEEAASPKK 202
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 25.4 bits (53), Expect = 6.3
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Query: 124 KGVGTLYIKKIENSDKHQLLVRANTALGNILLNLRLSAGIPTQRMGKNNV 173
KG G Y+ N D L A LGN +LN+ LS P + + K V
Sbjct: 796 KGFG--YVVMTTNQDAENALSAAGKQLGNRVLNVVLSK--PRESLEKTRV 841
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/49 (26%), Positives = 23/49 (46%)
Query: 58 SPSSDGSPLKFGAPSLTSTNTNNTEPANQEDEDVPPKVEFTPIAEENSV 106
S +SD SP F A + S + EP + ++ + E + E+ +V
Sbjct: 877 SDTSDRSPFSFKAFGIDSKKSPTPEPTEMAESNISEESEGWKLIEQPNV 925
>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1159
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/49 (26%), Positives = 18/49 (36%)
Query: 44 KTAKRRTTAPTDESSPSSDGSPLKFGAPSLTSTNTNNTEPANQEDEDVP 92
KT T S+P+ S FGA + + NT A + P
Sbjct: 942 KTTSEGTAPAASASAPAPTTSAFSFGASNSSMNKEENTPMAKDAGDTAP 990
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 6.3
Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 23 ENKEMGTFKAAPKDILEKRVIKTAKRRTTAPTDESSPSSDGSPLKFG-APSLTSTNTNNT 81
+++E + K + + A +T+P + +PS++G+ + SLTS +T T
Sbjct: 234 QDREASSKNCLSKALAFSSIEPPASSASTSPRNTPTPSNNGTSINANVTSSLTSNSTGKT 293
>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 489
Score = 25.4 bits (53), Expect = 6.3
Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 4/108 (3%)
Query: 3 VKRQATTDLNHENWDQEDPEENKEMGTFKAAPKDILEKRVIKTAKRRTTAPTDESSPSSD 62
V ATT L+HE P K +P + E+ ++ A S+ +S
Sbjct: 330 VPGHATTILHHEESSALPPTA----AWAKLSPSVLQERLRAAVNQQPLDALKSSSTQTSI 385
Query: 63 GSPLKFGAPSLTSTNTNNTEPANQEDEDVPPKVEFTPIAEENSVFDKR 110
K A L S N T+ N+ D+ + + E + FDK+
Sbjct: 386 PKIQKLKAAKLPSEEENTTKWLNKAINDLVSSLSKINFSTEGTEFDKK 433
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 50 TTAPTDESSPSSDGSPLKFGAPSLTSTNTNNTEPAN 85
T P ++ PS+ S P+ + NT+ TEPAN
Sbjct: 125 TVEPPTDNKPSASTST---AVPTTEARNTSITEPAN 157
>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 380
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 18 QEDPEENKEMGTFKAAPKDILEKRVIKTAKR 48
+ED EE KE+GT A D KR +K ++
Sbjct: 109 REDQEETKEVGT--AEMVDRFAKRTVKVTRQ 137
>SPBC947.08c |||histone promoter control protein Hpc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 338
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 158 RLSAGIPTQRMGKNNVMIICIPTPDSKPPPTSVLIRVK-TPEEADE 202
+ S+ +P Q G+N + + TP + PP L K +P +E
Sbjct: 225 KTSSSVPKQSTGENTKKAVKLETPLTSTPPIPPLSEPKHSPATVNE 270
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 25.0 bits (52), Expect = 8.3
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 3 VKRQATTDLNHENWDQEDPEENKEMGTFKAAPKDILEKRVIKTAK 47
+K+QA LN +E+P + T + + K I+++ +I AK
Sbjct: 1372 IKKQAMARLNSFLQKKEEPTVSSSAKTNELSSKVIIKESIINEAK 1416
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 25.0 bits (52), Expect = 8.3
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 63 GSPLKFGAPSLTSTNTNNTEPANQ---EDEDVPPKVEFTPIAEENSVFDK 109
G PL+ APS N + +P Q ED E +A+ S F+K
Sbjct: 382 GEPLEVEAPSFVVQNNSAVQPTTQKTSEDSTDLHTNEIPNVAQPPSSFEK 431
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.309 0.128 0.360
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,120,016
Number of Sequences: 5004
Number of extensions: 52531
Number of successful extensions: 191
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 171
Number of HSP's gapped (non-prelim): 39
length of query: 212
length of database: 2,362,478
effective HSP length: 70
effective length of query: 142
effective length of database: 2,012,198
effective search space: 285732116
effective search space used: 285732116
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 52 (25.0 bits)
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