Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000995-TA|BGIBMGA000995-PA|IPR000156|RanBP1
(212 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g11790.1 68417.m01878 Ran-binding protein 1 domain-containing... 55 3e-08
At1g52380.1 68414.m05911 Ran-binding protein 1 domain-containing... 40 0.001
At3g05900.1 68416.m00664 neurofilament protein-related similar t... 35 0.036
At4g08710.1 68417.m01439 hypothetical protein contains Pfam prof... 33 0.14
At3g09090.1 68416.m01069 defective in exine formation protein (D... 31 0.58
At1g23540.1 68414.m02960 protein kinase family protein contains ... 31 0.77
At3g51580.1 68416.m05650 expressed protein 30 1.0
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 30 1.3
At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1 pro... 30 1.3
At5g57320.1 68418.m07160 villin, putative similar to villin 2 (V... 29 1.8
At4g13690.1 68417.m02127 hypothetical protein 29 1.8
At5g65660.1 68418.m08259 hydroxyproline-rich glycoprotein family... 29 2.3
At2g22720.3 68415.m02692 expressed protein 29 2.3
At2g22720.2 68415.m02691 expressed protein 29 2.3
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains... 29 2.3
At5g40520.1 68418.m04916 expressed protein 29 3.1
At3g56720.1 68416.m06309 expressed protein 29 3.1
At3g48710.1 68416.m05319 expressed protein putative protein - Ar... 29 3.1
At1g20060.1 68414.m02511 kinesin motor protein-related 29 3.1
At4g18340.1 68417.m02721 glycosyl hydrolase family 17 protein si... 28 4.1
At1g49760.1 68414.m05580 polyadenylate-binding protein, putative... 28 4.1
At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein ... 28 5.4
At4g00200.1 68417.m00021 DNA-binding family protein contains a A... 28 5.4
At5g25820.1 68418.m03064 exostosin family protein contains Pfam ... 27 7.2
At2g22795.1 68415.m02704 expressed protein 27 7.2
At1g30420.1 68414.m03718 ATP-binding cassette transport protein,... 27 7.2
At1g09520.1 68414.m01067 expressed protein 27 7.2
At5g17980.1 68418.m02109 C2 domain-containing protein contains I... 27 9.5
At4g26910.3 68417.m03871 2-oxoacid dehydrogenase family protein ... 27 9.5
At4g26910.2 68417.m03873 2-oxoacid dehydrogenase family protein ... 27 9.5
At4g26910.1 68417.m03872 2-oxoacid dehydrogenase family protein ... 27 9.5
At4g26630.1 68417.m03837 expressed protein 27 9.5
At4g19100.1 68417.m02818 expressed protein 27 9.5
At3g60110.1 68416.m06712 DNA-binding bromodomain-containing prot... 27 9.5
At3g45230.1 68416.m04881 hydroxyproline-rich glycoprotein family... 27 9.5
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ... 27 9.5
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ... 27 9.5
At1g74680.1 68414.m08648 exostosin family protein contains Pfam ... 27 9.5
At1g72790.1 68414.m08415 hydroxyproline-rich glycoprotein family... 27 9.5
At1g13050.1 68414.m01513 expressed protein 27 9.5
>At4g11790.1 68417.m01878 Ran-binding protein 1 domain-containing
protein / RanBP1 domain-containing protein contains Pfam
profile PF00638: RanBP1 domain
Length = 443
Score = 55.2 bits (127), Expect = 3e-08
Identities = 48/165 (29%), Positives = 73/165 (44%), Gaps = 15/165 (9%)
Query: 60 SSDGSPLKFGAPSLT-STNTNNTEPANQEDEDVPPKVEFTPIAEENS---VFDKRCKVFV 115
S+ SP P ++ ++++ A+ DE P EE V + +CK++V
Sbjct: 276 SNSQSPFTSAVPPVSIPAKQDHSDDADGGDEQSQPSSPSVKKTEEKGITVVHEVKCKLYV 335
Query: 116 KK----DGNFVDKGVGTLYIKKIENSDK----HQLLVRANTALGNILLNLRLSAGIPTQR 167
K D + DKG G LYIK E DK + + +G +LLN L AG+ T
Sbjct: 336 KSSDPADKGWKDKGTGNLYIKCKEGVDKGTKESKPTILVRNDVGKLLLNALLYAGMKTSP 395
Query: 168 MGKNNVMIICIPTPDSKP--PPTSVLIRVKTPEEADEVLETLNKY 210
KN ++ I + DS P + LIR K E D + + +Y
Sbjct: 396 Q-KNALVAIFHSSDDSNENVTPRTFLIRTKNAEARDNLATAIQEY 439
>At1g52380.1 68414.m05911 Ran-binding protein 1 domain-containing
protein / RanBP1 domain-containing protein weak
similarity to SP|Q09717 Ran-specific GTPase-activating
protein 1 (Ran binding protein 1) (RANBP1)
(Spi1-binding protein) {Schizosaccharomyces pombe};
contains Pfam profile PF00638: RanBP1 domain
Length = 440
Score = 40.3 bits (90), Expect = 0.001
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 4/82 (4%)
Query: 2 SVKRQATTDLNHEN--WDQEDPEENKEMGTFKAAPKDILEKRVIKTAKRR--TTAPTDES 57
S KR A L+ +N D +D E GTFK A ++L R I KR+ + AP S
Sbjct: 11 SKKRGALKQLSRDNPGLDDDDDSAELESGTFKKASDEVLASRRIVRVKRKEPSAAPVAAS 70
Query: 58 SPSSDGSPLKFGAPSLTSTNTN 79
+P + + AP+ T TN
Sbjct: 71 NPFAGIQLVPTTAPASTPVGTN 92
>At3g05900.1 68416.m00664 neurofilament protein-related similar to
NF-180 (GI:632549) [Petromyzon marinus] similar to
Neurofilament triplet H protein (200 kDa neurofilament
protein) (Neurofilament heavy polypeptide) (NF-H)
(Swiss-Prot:P12036) [Homo sapiens]
Length = 673
Score = 35.1 bits (77), Expect = 0.036
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 6/96 (6%)
Query: 20 DPEENKEMGTFKAAPKDILEKRVIKTAKRRTTAPTDESSPSSDGSPLKFGAPSLTSTN-T 78
D E KE ++P DI+EK I K P+ + S GS L + TN
Sbjct: 443 DTEPKKETEEDVSSPADIIEK-AITEEKHVVEEPSKDEKTSESGSAL--SPEKVVPTNQD 499
Query: 79 NNTEPANQEDEDVPPKVEF--TPIAEENSVFDKRCK 112
++TEP + + DVP + I +E V ++ K
Sbjct: 500 SDTEPKKETEGDVPSPADVIEKAITDEKHVVEEPLK 535
>At4g08710.1 68417.m01439 hypothetical protein contains Pfam
profile PF03384: Drosophila protein of unknown
function, DUF287
Length = 715
Score = 33.1 bits (72), Expect = 0.14
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 49 RTTAPTDESSPSS-DGSPLKFGAPSLTSTNTNNTEPANQEDED 90
+ TAPT E++P++ + +P + PSLT + N E E+E+
Sbjct: 49 KETAPTKETAPATKETAPTRTEEPSLTEQDPENVEEEESEEEE 91
>At3g09090.1 68416.m01069 defective in exine formation protein
(DEX1) identical to defective in exine formation
[Arabidopsis thaliana] gi|11138669|gb|AAG31444; contains
Pfam domain PF01839: FG-GAP repeat
Length = 896
Score = 31.1 bits (67), Expect = 0.58
Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 11/159 (6%)
Query: 1 MSVKRQATTDLNHENWD---QEDPEENKEMGTFKAAPKDILEKRVI--KTAKRRTTAPTD 55
MS K + H+NW DP + D+LE+ + K++ +T A T
Sbjct: 153 MSDKLEVPRRKVHKNWHVGLNPDPVDRSHPDVHD----DVLEEEAMAMKSSTTQTNATTT 208
Query: 56 ESSPSSDGSPLKFGAPSLTSTNTNNTEPANQEDED-VPPKVEFTPIAEENSVFDKRCKVF 114
+ + + GA S ST + P N + E V P E + + +
Sbjct: 209 TPNVTVSMTKEVHGANSYVSTQEDQKRPENNQTEAIVKPTPELHNSSMDAGANNLAANAT 268
Query: 115 VKKDGNFVDKGVGTLYIKKIENS-DKHQLLVRANTALGN 152
+++ V T + + + S DK++ +++ NT+ GN
Sbjct: 269 TAGSRENLNRNVTTNEVDQSKISGDKNETVIKLNTSTGN 307
>At1g23540.1 68414.m02960 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 720
Score = 30.7 bits (66), Expect = 0.77
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 54 TDESSPSSDGSPLKFGAPSLTSTNTNNTEPANQEDEDVPP 93
TD P SD SP PS T+N P+ ED + PP
Sbjct: 75 TDSPPPPSDSSPPVDSTPS-PPPPTSNESPSPPEDSETPP 113
>At3g51580.1 68416.m05650 expressed protein
Length = 390
Score = 30.3 bits (65), Expect = 1.0
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 35 KDILEKRVIKTAKRRTT---APTDESSPSSDG-SPLKFGAPSLTSTNTNNTEPANQEDED 90
++++++ K TT +P P DG S + P+L ++N+ NT P +E +
Sbjct: 26 RELVDEETQKDNSNSTTKQESPLINPQPIGDGKSNVTSSEPTLPTSNSTNTNP--KEPDS 83
Query: 91 VPPKVEFTPIAEEN 104
+ P P+ E+N
Sbjct: 84 MSPPPPLIPVNEKN 97
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385: 'chromo'
(CHRromatin Organization MOdifier)
Length = 2228
Score = 29.9 bits (64), Expect = 1.3
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 49 RTTAPTDESSPSSDGSPLKFGAPSLTSTNTNNTEPANQEDEDVPPKVEFTPIA 101
+T+A PS G P L N N+TEP + E +PP E + IA
Sbjct: 2066 QTSATPPLPPPSLAGETSGSSQPKLPPHNLNSTEPLSSEAIIIPPPEEDSVIA 2118
>At1g48920.1 68414.m05480 nucleolin, putative similar to nuM1
protein GI:1279562 from [Medicago sativa]
Length = 557
Score = 29.9 bits (64), Expect = 1.3
Identities = 26/112 (23%), Positives = 47/112 (41%), Gaps = 11/112 (9%)
Query: 6 QATTDLNHENWDQEDPEENKEMGTFKAAPKDIL-----EKRVIKTAKRRTTAPTDESSPS 60
+AT L + ED + K + K KD++ EK V K K+ ++ +S
Sbjct: 15 KATKPLKKGKREPEDDIDTKV--SLKKQKKDVIAAVQKEKAVKKVPKKVESSDDSDSESE 72
Query: 61 SDGSPLKFGAPSLTSTNTNNTEPANQEDEDVPPKVEFTPIAEENSVFDKRCK 112
+ K A S++ +++ ++ +DE P K +A N K+ K
Sbjct: 73 EEEKAKKVPAKKAASSSDESSDDSSSDDEPAPKKA----VAATNGTVAKKSK 120
>At5g57320.1 68418.m07160 villin, putative similar to villin 2
(VLN2) [Arabidopsis thaliana] GI:3415115, villin 3
(VLN3) [Arabidopsis thaliana] GI:3415117; contains Pfam
profiles PF00626: Gelsolin repeat, PF02209: Villin
headpiece domain
Length = 962
Score = 29.5 bits (63), Expect = 1.8
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 31 KAAPKDILEKRVIKTAKRRTTAPTDESSPSSDGSPLKFGAPSLTSTNTNNTEPANQEDED 90
K APK + R K T+ +SPSS + + AP TS TN E + +ED
Sbjct: 830 KIAPKSAIAARTALFEKPTPTSQEPPTSPSSSEATNQAEAPKSTS-ETNEEEAMSSINED 888
>At4g13690.1 68417.m02127 hypothetical protein
Length = 194
Score = 29.5 bits (63), Expect = 1.8
Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Query: 3 VKRQATTDLNHENWDQEDPEENKEMGTFKAAPKDILEKRVIKTAKRRTTAPTDESSPSSD 62
V R T D+N E DQ EE M + + + R KT+K+R S S
Sbjct: 56 VSRDVTGDVNLEPVDQTAAEETDHMAPYSTEINEDIIVRDDKTSKKRKDPFEGMESMSRT 115
Query: 63 G-SPLKFGAPSLTS 75
G S + FG S S
Sbjct: 116 GKSVMVFGDNSKVS 129
>At5g65660.1 68418.m08259 hydroxyproline-rich glycoprotein family
protein
Length = 136
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 163 IPTQRMGKNNVMIICIPTPDSKPPPTSVLIRVKTPEEADEV 203
+P G N I +P P + P P + + V+TP ++ V
Sbjct: 86 VPVLMPGDNTPKFIALPCPCAPPRPEKLTVDVQTPPQSPPV 126
>At2g22720.3 68415.m02692 expressed protein
Length = 569
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 47 KRRTTAPTDESSPSSDGSPLKFGAPSLTSTNTNNTEPA 84
++R + S PSS GS + PS + + N++ PA
Sbjct: 211 EKRPVSANGHSRPSSSGSQMNHSRPSSSGSKMNHSRPA 248
>At2g22720.2 68415.m02691 expressed protein
Length = 672
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 47 KRRTTAPTDESSPSSDGSPLKFGAPSLTSTNTNNTEPA 84
++R + S PSS GS + PS + + N++ PA
Sbjct: 314 EKRPVSANGHSRPSSSGSQMNHSRPSSSGSKMNHSRPA 351
>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 1340
Score = 29.1 bits (62), Expect = 2.3
Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 5/101 (4%)
Query: 1 MSVKRQATTDLNHENWDQEDPEENKEMGTFKAAPKDILEKRVIKTAKRRTTAPTDESSPS 60
M V+ Q D + ++ +EDPEE+ E + +D E + A P +E
Sbjct: 1150 MEVENQDEEDDDGDDDPEEDPEEDPEEDPEEDPEEDPEECEEMDVANTEQEEPAEEPQKK 1209
Query: 61 SDGSPLKFG--APSLTSTNTNNTEP---ANQEDEDVPPKVE 96
+ G A +T T+N + N ++ PK E
Sbjct: 1210 EENLEKTSGTVADPITEAETDNRKEERGPNDSKTEIKPKSE 1250
>At5g40520.1 68418.m04916 expressed protein
Length = 693
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/77 (22%), Positives = 33/77 (42%)
Query: 12 NHENWDQEDPEENKEMGTFKAAPKDILEKRVIKTAKRRTTAPTDESSPSSDGSPLKFGAP 71
++++ D +D ++++ F E+ + K D++ SSD + GA
Sbjct: 428 DNDDDDDDDDDDDENCNLFDNEKLGNKEESRCRNIKLEVKDTQDDAMESSDSDHEESGAE 487
Query: 72 SLTSTNTNNTEPANQED 88
L T++T NQ D
Sbjct: 488 CLVLDPTDSTHETNQHD 504
>At3g56720.1 68416.m06309 expressed protein
Length = 386
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 47 KRRTTAPTDESSPSSDGSPLKFGAPSLTSTNTNNTEPANQEDED 90
K R A D+ S SSDGSP + +P+ + ++EP + ED
Sbjct: 31 KYRRRALADDGSSSSDGSPERNQSPN-PKHSRKDSEPVHVRKED 73
>At3g48710.1 68416.m05319 expressed protein putative protein -
Arabidopsis thaliana, EMBL:AL078465.1
Length = 462
Score = 28.7 bits (61), Expect = 3.1
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 14 ENWDQEDPEENKEMGTFKAAPKDILEKRVIKTAKRRTTAPTDESS--PSSDGSPLKFGAP 71
EN ED E E K K +KR+ K K+ A +E S S+ S F
Sbjct: 277 ENNKSEDTETEDEKDKAKEKTKSTDKKRLSKRTKKEKPAAEEEKSIKGSAKSSRKSFRQV 336
Query: 72 SLTSTNTNNTEPANQED 88
++T+++ + +++D
Sbjct: 337 DKSTTSSSKKQKVDKDD 353
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 3 VKRQATTDLNHENWDQEDPEENKEMGTFKAAPKDILEKRVIKTAKRRTTAPTDESSPSSD 62
V + T D N E+ + E NK T KD +++ T K+R + T + P+++
Sbjct: 258 VGSEGTNDSNGEDDVAPEEENNKSEDTETEDEKDKAKEKTKSTDKKRLSKRTKKEKPAAE 317
>At1g20060.1 68414.m02511 kinesin motor protein-related
Length = 951
Score = 28.7 bits (61), Expect = 3.1
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 5 RQATTDLNHENWDQEDPEENKEMGTFKAAPKDI-LEKRVIKTAKRRTTAPTDESSP 59
RQA+ + + + E+P +++ TF A K+ ++ KT++ + PTD SSP
Sbjct: 452 RQASPYMKIKFDNTEEPCNKRQLKTFPRAEKNKKIKLSAPKTSQGKKADPTDRSSP 507
>At4g18340.1 68417.m02721 glycosyl hydrolase family 17 protein
similar to elicitor inducible chitinase Nt-SubE76
GI:11071974 from [Nicotiana tabacum]
Length = 397
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 144 VRANTALGNILLNLRLSAGIPTQRMGKNNVMIICIPTPDSKPPPTS 189
V A T N+++ G P +R + +V I + D KP PTS
Sbjct: 288 VNAATYNRNLMMRQFAGEGTPARRNARLDVYIFALFNEDMKPGPTS 333
>At1g49760.1 68414.m05580 polyadenylate-binding protein, putative /
PABP, putative similar to poly(A)-binding protein
GB:AAF66825 GI:7673359 from [Nicotiana tabacum]
Length = 671
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 117 KDGNFVDKGVGTLYIKKIENSDKHQLLVRANTALGNIL 154
+D + GVG ++IK ++ S H+ L +A G IL
Sbjct: 123 RDPSLRKSGVGNIFIKNLDKSIDHKALHETFSAFGPIL 160
>At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domians PF02375: jmjN domain, PF02373:
jmjC domain and PF00096: Zinc finger, C2H2 type
Length = 1327
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 78 TNNTEPANQEDEDVPPKVEFTPIAEENSVFDKRCKVFVKKDGNFVDKGVGTLYIKKIENS 137
T N +P+ + E P+VE P+A + K +K+ + VD+ GT K +S
Sbjct: 208 TENNDPSGKNGEKSSPEVEKAPLASTSLSSQDSSK---QKNMDIVDEMEGTAGWKLSNSS 264
Query: 138 DKHQLLVRA 146
Q++ R+
Sbjct: 265 WNLQMIARS 273
>At4g00200.1 68417.m00021 DNA-binding family protein contains a AT
hook motif (DNA binding motifs with a preference for A/T
rich regions), Pfam:PF02178
Length = 345
Score = 27.9 bits (59), Expect = 5.4
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 1/82 (1%)
Query: 118 DGNFVDKGVGTLYIKKIENSDKHQLLVRANTALGNILLNLRLSAGIPT-QRMGKNNVMII 176
DG V GV L I H+ +G+ + + + P QR+ ++
Sbjct: 230 DGRVVGGGVAGLLIAATPIQVTHESNNNVYVVVGSFITSDQQDHQKPRKQRVEHAPAAVM 289
Query: 177 CIPTPDSKPPPTSVLIRVKTPE 198
+P P S PPP + + P+
Sbjct: 290 SVPPPPSPPPPAASVFSPTNPD 311
>At5g25820.1 68418.m03064 exostosin family protein contains Pfam
profile: PF03016 exostosin family
Length = 654
Score = 27.5 bits (58), Expect = 7.2
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Query: 45 TAKRRTTAPTDESS-----PSSDGSPLKFGAPSLTSTNTNNTEPANQEDEDVPPKVEFTP 99
T K TAP + PS + SP+ T++ P + D P V F P
Sbjct: 177 TVKENATAPVASAKAPVALPSINPSPVMKNETLPTTSKVPERNPTKKNVGDASPIVRFVP 236
Query: 100 IAEENS 105
+EN+
Sbjct: 237 DVKENA 242
>At2g22795.1 68415.m02704 expressed protein
Length = 734
Score = 27.5 bits (58), Expect = 7.2
Identities = 25/116 (21%), Positives = 54/116 (46%), Gaps = 5/116 (4%)
Query: 2 SVKRQATTDLNHENWDQEDPEE--NKEMGTFKAAPKDILEKRVIKTAKRRTTAPTDESSP 59
S + + T E+ QE+ +E N+++ ++AP++ +++ + ++ +A +E+
Sbjct: 558 SKENETETKEKEESSSQEETKEKENEKIEKEESAPQEETKEKENEKIEKEESASQEETKE 617
Query: 60 SSDGSPLKFGAPSLTSTNTNNTEPANQEDEDVPPK---VEFTPIAEENSVFDKRCK 112
+ K + S S NTE +E + K + + ++ENSV D K
Sbjct: 618 KETETKEKEESSSNESQENVNTESEKKEQVEENEKKTDEDTSESSKENSVSDTEQK 673
>At1g30420.1 68414.m03718 ATP-binding cassette transport protein,
putative contains Pfam profiles PF00005: ABC
transporter, PF00664: ABC transporter transmembrane
region
Length = 1488
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 115 VKKDGNFVDKGV-GTLYIKKIENSDKHQLLVRANTALGNI 153
+K++GNF + GTL+ K +EN+ K NT NI
Sbjct: 817 IKEEGNFAELSKSGTLFKKLMENAGKMDATQEVNTNDENI 856
>At1g09520.1 68414.m01067 expressed protein
Length = 260
Score = 27.5 bits (58), Expect = 7.2
Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 19 EDPEENKEMGTFKAAPKDILEKRVIKTAKRRTT--------APTDES---SPSSDGSPLK 67
E KE K ++ LE+ V+ AK + AP D+ SP+S+G+ +K
Sbjct: 159 ETDRRGKEAALAKKRAREALEQVVMLDAKEKARSVVPKLKEAPVDQKPKLSPASNGATVK 218
Query: 68 FGAPS-LTSTNTNNTEPANQEDEDVPPKVEFTPIAEE 103
S T+T T T N E P + + +E
Sbjct: 219 ETESSDTTTTPTTTTTKNNGGTEKQNPATQLAKVKQE 255
>At5g17980.1 68418.m02109 C2 domain-containing protein contains
INTERPRO:IPR000008 C2 domain
Length = 1049
Score = 27.1 bits (57), Expect = 9.5
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 18 QEDPEENKEMGTFKAAPKDILEK--RVIKTAKRRTTAPTDESSPSSDGSPLKFGAPSLTS 75
+E EE K G ++ P +K + P +ESSP+ P + +P L
Sbjct: 154 EEKTEETKAEGPDESKPPPETNDIPAEVKETVKPPQPPPEESSPAEGPKPDEEASPPLQE 213
Query: 76 TNTNNTE--PANQEDEDVPPKVEFTPIAE 102
T E PA++ D++ + E P+ E
Sbjct: 214 NATVGGEEPPASESDKN---EAEAKPVEE 239
>At4g26910.3 68417.m03871 2-oxoacid dehydrogenase family protein
similar to SP|P36957 Dihydrolipoamide
succinyltransferase component of 2-oxoglutarate
dehydrogenase complex, mitochondrial precursor (EC
2.3.1.61) {Homo sapiens}; contains Pfam profiles
PF00198: 2-oxo acid dehydrogenases acyltransferase
(catalytic domain), PF00364: Biotin-requiring enzyme
Length = 365
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 71 PSLTSTNTNNTEPANQEDEDVPPKVEFTPIAEE 103
PS T +T+P+ ++ P+VE P+AE+
Sbjct: 79 PSQKIPETTDTKPSPPAEDKQKPRVESAPVAEK 111
>At4g26910.2 68417.m03873 2-oxoacid dehydrogenase family protein
similar to SP|P36957 Dihydrolipoamide
succinyltransferase component of 2-oxoglutarate
dehydrogenase complex, mitochondrial precursor (EC
2.3.1.61) {Homo sapiens}; contains Pfam profiles
PF00198: 2-oxo acid dehydrogenases acyltransferase
(catalytic domain), PF00364: Biotin-requiring enzyme
Length = 463
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 71 PSLTSTNTNNTEPANQEDEDVPPKVEFTPIAEE 103
PS T +T+P+ ++ P+VE P+AE+
Sbjct: 177 PSQKIPETTDTKPSPPAEDKQKPRVESAPVAEK 209
>At4g26910.1 68417.m03872 2-oxoacid dehydrogenase family protein
similar to SP|P36957 Dihydrolipoamide
succinyltransferase component of 2-oxoglutarate
dehydrogenase complex, mitochondrial precursor (EC
2.3.1.61) {Homo sapiens}; contains Pfam profiles
PF00198: 2-oxo acid dehydrogenases acyltransferase
(catalytic domain), PF00364: Biotin-requiring enzyme
Length = 464
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 71 PSLTSTNTNNTEPANQEDEDVPPKVEFTPIAEE 103
PS T +T+P+ ++ P+VE P+AE+
Sbjct: 178 PSQKIPETTDTKPSPPAEDKQKPRVESAPVAEK 210
>At4g26630.1 68417.m03837 expressed protein
Length = 763
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 115 VKKDGNFVDKGVGTLYIKKIENSDKHQ 141
+K++G VD+ GT +K+EN D+++
Sbjct: 181 IKEEGTLVDEDKGTDMDEKVENGDENK 207
>At4g19100.1 68417.m02818 expressed protein
Length = 214
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 64 SPLKFGAPSLTSTNTNNTEPANQEDED 90
SP FG P + + +P NQ DED
Sbjct: 66 SPKGFGPPPKKTKKSKKPKPGNQSDED 92
>At3g60110.1 68416.m06712 DNA-binding bromodomain-containing protein
contains bromodomain, INTERPRO:IPR001487
Length = 438
Score = 27.1 bits (57), Expect = 9.5
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 2 SVKRQATTDLNHENWDQEDPEENK--EMGTFKAAPKDILE--KRVIKTAKRRTTAPTDES 57
++K+Q T + D ++ EEN E T K + + KR+ K + ++ T ++
Sbjct: 292 NIKKQTDTKTESSDDDDDEKEENSKTEKKTVADKKKSVADFLKRIKKNSPQKGKETTSKN 351
Query: 58 SPSSDGSPLK 67
+DG+ K
Sbjct: 352 QKKNDGNVKK 361
>At3g45230.1 68416.m04881 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; related to vegetative cell wall
protein gp1 [Chlamydomonas reinhardtii]
gi|12018147|gb|AAG45420
Length = 175
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 4/40 (10%)
Query: 53 PTDESSPSSDGSPLKFGAPSLTSTNTNNTEPANQEDEDVP 92
P D SPSS SP +PS +++ N+++ E E +P
Sbjct: 87 PNDSQSPSSSASP----SPSPEASDVNHSDITGIEGEKLP 122
>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 51 TAPTDESSPSSDGSPLKFGAPSLTSTNTNNTEPANQEDEDVP 92
++P+ P+ G P+ GAPS+ + + P + D P
Sbjct: 255 SSPSSVPHPAVSGGPIALGAPSIQAALKHPRTPPSNSAVDYP 296
>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
WD-40 repeats domain (PF00400) (6 weak)
Length = 1120
Score = 27.1 bits (57), Expect = 9.5
Identities = 11/42 (26%), Positives = 20/42 (47%)
Query: 51 TAPTDESSPSSDGSPLKFGAPSLTSTNTNNTEPANQEDEDVP 92
++P+ P+ G P+ GAPS+ + + P + D P
Sbjct: 255 SSPSSVPHPAVSGGPIALGAPSIQAALKHPRTPPSNSAVDYP 296
>At1g74680.1 68414.m08648 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 461
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 175 IICIPTPDSKPPPTSVLIRVKTPEEADEV 203
++ TP+ K P +S IRVK EAD V
Sbjct: 131 LLASETPEIKRPCSSAAIRVKNSNEADIV 159
>At1g72790.1 68414.m08415 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 561
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Query: 75 STNTNNTEPANQEDEDVPPKVEFTPIAEENSVFDKRCKV 113
S NTNN E + ++ED+ K +P S+ D+R +V
Sbjct: 93 SRNTNNDESNHHKEEDIRNKFSTSP-----SIIDRRSRV 126
>At1g13050.1 68414.m01513 expressed protein
Length = 317
Score = 27.1 bits (57), Expect = 9.5
Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 43 IKTAKRRTTAP--TDESSPSSDGSPLKFGAPSLTSTNTNNTEPANQEDEDVPP 93
IKT R T P T SPSS PL+ P N N+ P E+ P
Sbjct: 50 IKTRGRHQTEPPETIHESPSSRPLPLRPEEPLPPRHNPNSARPLQLSPEEQRP 102
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.309 0.128 0.360
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,718,754
Number of Sequences: 28952
Number of extensions: 267792
Number of successful extensions: 808
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 781
Number of HSP's gapped (non-prelim): 50
length of query: 212
length of database: 12,070,560
effective HSP length: 78
effective length of query: 134
effective length of database: 9,812,304
effective search space: 1314848736
effective search space used: 1314848736
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 57 (27.1 bits)
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