Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000994-TA|BGIBMGA000994-PA|IPR010097|Malate
dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria,
IPR001236|Lactate/malate dehydrogenase
(329 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0072 + 26184592-26184828,26184934-26185107,26185591-261857... 197 9e-51
08_02_0774 - 21047696-21048889 196 2e-50
01_06_1220 + 35493575-35494765 195 5e-50
05_07_0204 - 28397597-28397737,28398225-28398342,28399215-283993... 194 1e-49
07_03_1371 - 26100553-26101767 163 2e-40
03_06_0127 - 31872840-31872912,31873021-31873115,31873199-318732... 162 4e-40
12_02_1221 - 27130321-27130491,27130616-27130664,27131120-271311... 159 4e-39
06_01_0033 - 346273-347355 44 2e-04
02_01_0042 + 295608-296222,298479-298925 43 3e-04
09_02_0535 - 10346395-10346705,10347100-10347175,10348931-103490... 30 2.2
05_03_0455 + 14234908-14235014,14235206-14235392,14235628-142363... 30 3.0
01_07_0041 + 40688242-40688278,40688396-40688502,40688612-406887... 30 3.0
01_06_1643 - 38878597-38878725,38878818-38878934,38879118-388794... 30 3.0
01_01_0568 - 4207812-4209587,4210056-4210291,4210647-4210793,421... 29 3.9
01_06_1100 + 34530132-34530485,34530544-34530705 29 5.2
10_08_0982 - 22025279-22027277,22030256-22030488,22031205-220313... 29 6.8
02_04_0610 + 24335153-24337724,24337835-24338256 29 6.8
01_06_0959 - 33362810-33363125,33363309-33363475,33363583-333644... 28 9.0
>01_06_0072 +
26184592-26184828,26184934-26185107,26185591-26185759,
26185863-26185924,26186506-26186630,26186735-26186852,
26187760-26187897
Length = 340
Score = 197 bits (481), Expect = 9e-51
Identities = 101/309 (32%), Positives = 176/309 (56%), Gaps = 4/309 (1%)
Query: 19 QVTVVGATSEVGQVXXXXXXXXXXITKLVVHDNKEFTPGVTLDLSQIPSPSRILGLTGED 78
+V ++GA +GQ ++ L ++D TPGV D+S I +P+++ G G+D
Sbjct: 29 KVAILGAAGGIGQPLSLLMKLNPLVSSLSLYDIAG-TPGVAADVSHINAPAQVKGFMGDD 87
Query: 79 TLERALKNSDLIIAAGGLSQRPDISEKALLTANSQFIKSIISKLGRSCPIPFVGIVTEPI 138
L AL+ SD++I G+ ++P ++ L N+ +K++ + + + CP V +++ P+
Sbjct: 88 QLGEALEGSDIVIIPAGVPRKPGMTRDDLFNINAGIVKNLCTAIAKYCPNALVNMISNPV 147
Query: 139 NYLIPMTAEIMRNHGVYDEKKLFGITEIDAIRSQCLYATENNLKANDCYVPVIGGHSDKT 198
N +P+ AE+ + G YDEKKLFG+T +D +R++ YA + N+ D VPV+GGH+ T
Sbjct: 148 NSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVTDVNVPVVGGHAGIT 207
Query: 199 IVPLLSQAKP-TVEMKEKDLEEFTIKLRNCDGMITKAKRG-CIPNLSVAYSSFLFTKSIL 256
I+PL SQA P T + ++D++ T + ++ + +AK G LS+AY+ +F + L
Sbjct: 208 ILPLFSQATPATNALSDEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFANACL 267
Query: 257 DALEGSPAKIH-AFVDNNDFGTSYFSSLVNLDKNGVKEMVRYSEFSKFECDLIEKSLQQL 315
L G P + +FV + +F+S V L KNGV+E++ + S FE + +E +L
Sbjct: 268 KGLNGVPDVVECSFVQSTVTELPFFASKVKLGKNGVEEVLGLGQLSDFEKEGLENLKGEL 327
Query: 316 RKDVSKGRK 324
+ + KG K
Sbjct: 328 KASIEKGIK 336
>08_02_0774 - 21047696-21048889
Length = 397
Score = 196 bits (478), Expect = 2e-50
Identities = 104/325 (32%), Positives = 177/325 (54%), Gaps = 5/325 (1%)
Query: 2 IVNRRIISSLFTTTRSYQVTVVGATSEVGQVXXXXXXXXXXITKLVVHDNKEFTPGVTLD 61
IV + S + SY+V V+GA +GQ +++L ++D GV D
Sbjct: 60 IVPKAKSGSQISPEASYKVAVLGAAGGIGQPLGLLIKMSPLVSELHLYDIAN-VKGVAAD 118
Query: 62 LSQIPSPSRILGLTGEDTLERALKNSDLIIAAGGLSQRPDISEKALLTANSQFIKSIISK 121
LS +PS++L TG L LK D+++ G+ ++P ++ L N+ +KS++
Sbjct: 119 LSHCNTPSQVLDFTGPSELANCLKGVDVVVIPAGVPRKPGMTRDDLFNINASIVKSLVEA 178
Query: 122 LGRSCPIPFVGIVTEPINYLIPMTAEIMRNHGVYDEKKLFGITEIDAIRSQCLYATENNL 181
+ +CP F+ I++ P+N +P+ AE+++ GVY+ KKLFG+T +D +R+ A + NL
Sbjct: 179 VADNCPEAFIHIISNPVNSTVPIAAEVLKQKGVYNPKKLFGVTTLDVVRANTFVAQKKNL 238
Query: 182 KANDCYVPVIGGHSDKTIVPLLSQAKPTVEMKEKDLEEFTIKLRNCDGMITKAKRGC-IP 240
K D VPV+GGH+ TI+PLLS+ P+V +++ E+ T +++N + +AK G
Sbjct: 239 KLIDVDVPVVGGHAGITILPLLSKTMPSVTFTDEETEQLTKRIQNAGTEVVEAKAGAGSA 298
Query: 241 NLSVAYSSFLFTKSILDALEGSPAKIH-AFVDNNDFGTSYFSSLVNLDKNGVKEMVR--Y 297
LS+AY++ F +S L AL G P FV + +F+S V L KNGV+ ++
Sbjct: 299 TLSMAYAAARFVESSLRALAGDPDVYECTFVQSELTELPFFASRVKLGKNGVESIISADL 358
Query: 298 SEFSKFECDLIEKSLQQLRKDVSKG 322
+++E +E +L+ + KG
Sbjct: 359 EGVTEYEAKALEALKSELKASIEKG 383
>01_06_1220 + 35493575-35494765
Length = 396
Score = 195 bits (475), Expect = 5e-50
Identities = 104/325 (32%), Positives = 176/325 (54%), Gaps = 5/325 (1%)
Query: 2 IVNRRIISSLFTTTRSYQVTVVGATSEVGQVXXXXXXXXXXITKLVVHDNKEFTPGVTLD 61
IV + S + SY+V V+GA +GQ ++ L ++D GV D
Sbjct: 60 IVPKANSGSHISPEASYKVAVLGAAGGIGQPLGLLIKMSPLVSALHLYDIAN-VKGVAAD 118
Query: 62 LSQIPSPSRILGLTGEDTLERALKNSDLIIAAGGLSQRPDISEKALLTANSQFIKSIISK 121
LS +PS++L TG L LK D+++ G+ ++P ++ L N+ +K+++
Sbjct: 119 LSHCNTPSQVLDFTGPSELANCLKGVDVVVIPAGVPRKPGMTRDDLFNINASIVKTLVEA 178
Query: 122 LGRSCPIPFVGIVTEPINYLIPMTAEIMRNHGVYDEKKLFGITEIDAIRSQCLYATENNL 181
+ +CP F+ I++ P+N +P+ AE+++ GVY+ KKLFG+T +D +R+ A + NL
Sbjct: 179 VADNCPEAFIHIISNPVNSTVPIAAEVLKQKGVYNPKKLFGVTTLDVVRANTFIAQKKNL 238
Query: 182 KANDCYVPVIGGHSDKTIVPLLSQAKPTVEMKEKDLEEFTIKLRNCDGMITKAKRGC-IP 240
K D VPV+GGH+ TI+PLLS+ +P+V ++ EE T +++N + +AK G
Sbjct: 239 KLIDVDVPVVGGHAGITILPLLSKTRPSVTFTNEETEELTRRIQNAGTEVVEAKAGAGSA 298
Query: 241 NLSVAYSSFLFTKSILDALEGSPAKIH-AFVDNNDFGTSYFSSLVNLDKNGVKEMVR--Y 297
LS+AY++ F +S L AL G P FV + +F+S V L KNGV+ ++
Sbjct: 299 TLSMAYAAARFVESSLRALAGDPDVYECTFVQSELTELLFFASRVKLGKNGVESIISSDL 358
Query: 298 SEFSKFECDLIEKSLQQLRKDVSKG 322
+++E +E +L+ + KG
Sbjct: 359 EGVTEYEAKALESLKPELKASIEKG 383
>05_07_0204 -
28397597-28397737,28398225-28398342,28399215-28399339,
28399683-28399744,28399867-28400035,28400594-28400767,
28400856-28401089
Length = 340
Score = 194 bits (472), Expect = 1e-49
Identities = 100/309 (32%), Positives = 173/309 (55%), Gaps = 4/309 (1%)
Query: 19 QVTVVGATSEVGQVXXXXXXXXXXITKLVVHDNKEFTPGVTLDLSQIPSPSRILGLTGED 78
+V ++GA +GQ ++ L ++D TPGV D+S I SP+ + G GE+
Sbjct: 28 KVAILGAAGGIGQPLALLMKLNPLVSSLSLYDIAG-TPGVAADVSHINSPALVKGFVGEE 86
Query: 79 TLERALKNSDLIIAAGGLSQRPDISEKALLTANSQFIKSIISKLGRSCPIPFVGIVTEPI 138
L AL+ SD++I G+ ++P ++ L N+ +K + + + + CP V +++ P+
Sbjct: 87 QLGEALEGSDVVIIPAGVPRKPGMTRDDLFNINAGIVKGLCTAISKYCPNALVNMISNPV 146
Query: 139 NYLIPMTAEIMRNHGVYDEKKLFGITEIDAIRSQCLYATENNLKANDCYVPVIGGHSDKT 198
N +P+ AE+ + G YDEKKLFG+T +D +R++ YA + N+ + VPV+GGH+ T
Sbjct: 147 NSTVPIAAEVFKKAGTYDEKKLFGVTTLDVVRAKTFYAGKANVPVTEVNVPVVGGHAGIT 206
Query: 199 IVPLLSQAKPTVE-MKEKDLEEFTIKLRNCDGMITKAKRG-CIPNLSVAYSSFLFTKSIL 256
I+PL SQA P + +D++ T + ++ + +AK G LS+AY+ +F + L
Sbjct: 207 ILPLFSQATPASNALSHEDIKALTKRTQDGGTEVVEAKAGKGSATLSMAYAGAVFADACL 266
Query: 257 DALEGSPAKIH-AFVDNNDFGTSYFSSLVNLDKNGVKEMVRYSEFSKFECDLIEKSLQQL 315
L G P + +FV + +F+S V L KNGV+E++ + S+FE + +E +L
Sbjct: 267 KGLNGVPDVVECSFVQSTVTELPFFASKVRLGKNGVEEVLGLGQLSEFEKEGLENLKGEL 326
Query: 316 RKDVSKGRK 324
+ + KG K
Sbjct: 327 KSSIEKGIK 335
>07_03_1371 - 26100553-26101767
Length = 404
Score = 163 bits (395), Expect = 2e-40
Identities = 91/328 (27%), Positives = 170/328 (51%), Gaps = 12/328 (3%)
Query: 5 RRIISSLFTTTRSYQVTVVGATSEVGQVXXXXXXXXXXITKLVVHDNKEFTPGVTLDLSQ 64
RR + + Y+V ++GA +GQ ++ L ++D GVT DL
Sbjct: 65 RRAGNRVVAQAGGYKVAILGAAGGIGQPLSLLVKMSPLVSALHLYDIAN-VDGVTADLGH 123
Query: 65 IPSPSRILGLTGEDTLERALKNSDLIIAAGGLSQRPDISEKALLTANSQFIKSIISKLGR 124
+P+++ G TG++ L L D+++ G+ ++P ++ L N+ ++ ++ +
Sbjct: 124 CNTPAKVAGFTGKEELAGCLAGVDVVVIPAGVPRKPGMTRDDLFGINAGIVRELVEAVAD 183
Query: 125 SCPIPFVGIVTEPINYLIPMTAEIMRNHGVYDEKKLFGITEIDAIRSQCLYATENNLKAN 184
P V +++ P+N +P+ AE+++ GVYD +KLFG+T +D +R+ A L
Sbjct: 184 HAPAALVHVISNPVNSTVPIAAEVLKRKGVYDPRKLFGVTTLDVVRANTFVAEMKGLPLA 243
Query: 185 DCYVPVIGGHSDKTIVPLLSQAKPTVEMKEKDLEEFTIKLRNCDGMITKAKR---GCIPN 241
D VPV+GGH+ TI+PLLS+A+P ++++E T +++N + +AK G
Sbjct: 244 DVDVPVVGGHAAATILPLLSKARPKTAFTDEEVEALTRRIQNAGTEVVEAKAKAGGGSAT 303
Query: 242 LSVAYSSFLFTKSILDALEGSPAKIH--AFVDNNDF-GTSYFSSLVNLDKNGVKEM---- 294
LS+AY++ F ++ L L+G A ++ ++V +F+ V L ++GV+E+
Sbjct: 304 LSMAYAAARFLEASLRGLDGD-ADVYECSYVQCQAVPELPFFACRVKLGRDGVEEVAAAG 362
Query: 295 VRYSEFSKFECDLIEKSLQQLRKDVSKG 322
++FE +E QL+K + KG
Sbjct: 363 AELRGLTEFEARALEALKPQLKKSIDKG 390
>03_06_0127 -
31872840-31872912,31873021-31873115,31873199-31873288,
31873364-31873399,31874039-31874122,31874223-31874312,
31874426-31874740,31875674-31875883,31875965-31876036
Length = 354
Score = 162 bits (393), Expect = 4e-40
Identities = 87/307 (28%), Positives = 159/307 (51%), Gaps = 3/307 (0%)
Query: 18 YQVTVVGATSEVGQVXXXXXXXXXXITKLVVHDNKEFTPGVTLDLSQIPSPSRILGLTGE 77
++V V+GA +GQ ++ L ++D TPGVT D+S + + + + G G
Sbjct: 43 FKVAVLGAAGGIGQPLSLLMKLNPLVSVLHLYDVVN-TPGVTADVSHMDTTAVVRGFLGP 101
Query: 78 DTLERALKNSDLIIAAGGLSQRPDISEKALLTANSQFIKSIISKLGRSCPIPFVGIVTEP 137
+ LE AL DL+I GL ++P ++ L N+ ++S+ + + CP V +++ P
Sbjct: 102 NQLEAALTGMDLVIIPAGLPRKPGMTRDDLFNKNAGIVRSLCEGVAKCCPNAIVNLISNP 161
Query: 138 INYLIPMTAEIMRNHGVYDEKKLFGITEIDAIRSQCLYATENNLKANDCYVPVIGGHSDK 197
+N +P+ AE+ + G YD K+L G+T +D R+ A + D VPV+GGH+
Sbjct: 162 VNSTVPIAAEVFKKAGTYDPKRLLGVTTLDVARANTFVAEVLGIDPKDVNVPVVGGHAGV 221
Query: 198 TIVPLLSQAKPTVEMKEKDLEEFTIKLRNCDGMITKAKRGC-IPNLSVAYSSFLFTKSIL 256
TI+PLLSQ P ++ T +++N + +AK G LS+A+++ F + L
Sbjct: 222 TILPLLSQVHPPCSFTPDEISYLTKRIQNGGTEVVEAKAGAGSATLSMAFAAAKFGDACL 281
Query: 257 DALEGSPAKIH-AFVDNNDFGTSYFSSLVNLDKNGVKEMVRYSEFSKFECDLIEKSLQQL 315
A+ G + ++V + +F++ V L + G +E++ + FE +E + ++L
Sbjct: 282 RAMRGDAGVVECSYVASAVTELPFFATKVRLGRAGAEEVLPLGPLNDFERAGLEMAKKEL 341
Query: 316 RKDVSKG 322
+ + KG
Sbjct: 342 MESIQKG 348
>12_02_1221 -
27130321-27130491,27130616-27130664,27131120-27131188,
27131845-27131939,27132032-27132121,27132885-27132968,
27133122-27133211,27133310-27133624,27134184-27134399,
27134736-27134774,27135337-27135408
Length = 429
Score = 159 bits (385), Expect = 4e-39
Identities = 85/306 (27%), Positives = 158/306 (51%), Gaps = 13/306 (4%)
Query: 18 YQVTVVGATSEVGQVXXXXXXXXXXITKLVVHDNKEFTPGVTLDLSQIPSPSRILGLTGE 77
++V ++GA+ +GQ ++ L ++D TPGVT D+S + + + + G G+
Sbjct: 58 FKVAILGASGGIGQPLALLMKMNPLVSVLHLYDVVN-TPGVTADISHMNTGAVVRGFLGQ 116
Query: 78 DTLERALKNSDLIIAAGGLSQRPDISEKALLTANSQFIKSIISKLGRSCPIPFVGIVTEP 137
LE AL DL+I G+ ++P ++ L N+ ++++ + + CP V +++ P
Sbjct: 117 PQLENALTGMDLVIIPAGVPRKPGMTRDDLFNINAGIVRTLCEGIAKCCPNAIVNVISNP 176
Query: 138 INYLIPMTAEIMRNHGVYDEKKLFGITEIDAIRSQCLYATENNLKANDCYVPVIGGHSDK 197
+N +P+ AE+ + G YD K+L G+T +D +R+ A L D VPVIGGH+
Sbjct: 177 VNSTVPIAAEVFKKAGTYDPKRLLGVTTLDVVRANTFVAEVLGLDPRDVNVPVIGGHAGV 236
Query: 198 TIVPLLSQAKPTVEMKEKDLEEFTIKLRNCDGMITKAKRGCIPNLSVAYSSFLFTKSILD 257
TI+PLLSQ P +++ T +++N + + AY++ F + L
Sbjct: 237 TILPLLSQVNPPCSFTSEEISYLTTRIQNGGTEVVE-----------AYAASKFADACLR 285
Query: 258 ALEGSPAKIH-AFVDNNDFGTSYFSSLVNLDKNGVKEMVRYSEFSKFECDLIEKSLQQLR 316
L G + +FV + +F+S V L + G++E++ ++FE +EK+ ++L
Sbjct: 286 GLRGDAGIVECSFVASQVTELPFFASKVRLGRCGIEEILSLGPLNEFERAGLEKAKKELA 345
Query: 317 KDVSKG 322
+ + KG
Sbjct: 346 ESIQKG 351
>06_01_0033 - 346273-347355
Length = 360
Score = 43.6 bits (98), Expect = 2e-04
Identities = 42/186 (22%), Positives = 77/186 (41%), Gaps = 8/186 (4%)
Query: 16 RSYQVTVVGATSEVGQVXXXXXXXXXXITKLVVHDN-KEFTPGVTLDLSQIPS-PSRILG 73
R +++V+GA VG ++V+ D + G LDL + R+
Sbjct: 37 RLIKISVIGA-GNVGMAIAQTILTQDLADEIVLIDAVADKVRGEMLDLQHAAAFLPRVNI 95
Query: 74 LTGEDTLERALKNSDLIIAAGGLSQRPDISEKALLTANSQFIKSIISKLGRSCPIPFVGI 133
++G + ++SDL+I G Q P + LL N + I+ + P + I
Sbjct: 96 VSGTEV--SLTRSSDLVIVTAGARQIPGETRLNLLQRNVSLFRKIVPAAAEASPESVLVI 153
Query: 134 VTEPINYLIPMTAEIMRNHGVYDEKKLFGITEIDAIRSQCLYATENNLKANDCYVPVIGG 193
V+ P++ L T + G + + T +D+ R + L A + A D ++G
Sbjct: 154 VSNPVDVL---TYVAWKLSGFPASRVIGSGTNLDSSRFRFLLAEHLEVSAQDVQAYMVGE 210
Query: 194 HSDKTI 199
H D ++
Sbjct: 211 HGDSSV 216
>02_01_0042 + 295608-296222,298479-298925
Length = 353
Score = 43.2 bits (97), Expect = 3e-04
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 3/122 (2%)
Query: 78 DTLERALKNSDLIIAAGGLSQRPDISEKALLTANSQFIKSIISKLGRSCPIPFVGIVTEP 137
DT + SDL I G Q P S LL N + I+ L P + IV+ P
Sbjct: 99 DTDLAVTRGSDLAIVTAGARQIPGESRLNLLQRNVALFRKIVPALAEHSPEALLLIVSNP 158
Query: 138 INYLIPMTAEIMRNHGVYDEKKLFGITEIDAIRSQCLYATENNLKANDCYVPVIGGHSDK 197
++ L T + G + + T +D+ R + L A + A D ++G H D
Sbjct: 159 VDVL---TYVAWKLSGFPASRVIGSGTNLDSSRFRFLLAEHLQVNAQDVQAYMVGEHGDS 215
Query: 198 TI 199
++
Sbjct: 216 SV 217
>09_02_0535 -
10346395-10346705,10347100-10347175,10348931-10349070,
10349294-10349578,10349677-10349718,10350963-10351461,
10351557-10351723,10352128-10352412,10352695-10352836
Length = 648
Score = 30.3 bits (65), Expect = 2.2
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 66 PSPSRILGLTGEDTLERALKNSDLIIAAGGLS-QRPDISEKALLTANSQFI 115
P+P+ L G+ L +N+ L+IA GG S PD SE A A+S I
Sbjct: 29 PAPTTFKTLNGKLDLAPLNRNAPLVIAKGGFSGVFPDSSEYAFAFASSLHI 79
>05_03_0455 +
14234908-14235014,14235206-14235392,14235628-14236395,
14236455-14236758,14236924-14236991
Length = 477
Score = 29.9 bits (64), Expect = 3.0
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
Query: 189 PVIGGHSDKTIVPLLSQA-KPTVEMKEKD---LEEFTIKLRNCDGMITKAKRGCIPNLSV 244
P GG S ++VPLL +A K T ++EK +E+ L + DG I K KR + L
Sbjct: 88 PPKGGKSVASMVPLLEKAKKKTNSIREKHELAWQEYGCSLMS-DGWIDKRKRHLVNFLVN 146
Query: 245 AYSSFLFTKSI 255
+ + F +SI
Sbjct: 147 SLAGTFFLESI 157
>01_07_0041 +
40688242-40688278,40688396-40688502,40688612-40688707,
40688859-40688915,40689033-40689194,40689310-40689394,
40689648-40689738,40689813-40689977,40690121-40690240,
40690330-40690402,40690482-40690650,40690741-40691651,
40691839-40691931,40692065-40692255,40692343-40692455,
40692757-40692783,40693915-40693949
Length = 843
Score = 29.9 bits (64), Expect = 3.0
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 2/59 (3%)
Query: 169 IRSQCLYATENNLKANDCYVPVIGGHSDKTIVPL-LSQAKPTVEMKEKDLEEFTIKLRN 226
+RS C T ++ + + V+ H+D+ + PL ++Q+ PT E+ KDL + R+
Sbjct: 121 VRSFCKTLTASDTSTHGGF-SVLRRHADECLPPLDMTQSPPTQELVAKDLHSMDWRFRH 178
>01_06_1643 -
38878597-38878725,38878818-38878934,38879118-38879450,
38880366-38880758
Length = 323
Score = 29.9 bits (64), Expect = 3.0
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 208 PTVEMKEKDLEEFTIKLRNCDGMITKAKRGCIPNL 242
P+ +K LEE IK N G IT K+G IP+L
Sbjct: 277 PSSLQDQKKLEE-AIKFANACGAITATKKGAIPSL 310
>01_01_0568 -
4207812-4209587,4210056-4210291,4210647-4210793,
4211857-4212145
Length = 815
Score = 29.5 bits (63), Expect = 3.9
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 270 VDNNDFGTSYFSSLVNLDKNGVKEMVRYSEFSKFECDLIEKSLQQLRKDVSKGRKIL 326
+DN SSL++ + + + +S+ +K +L E +QQL ++V + R L
Sbjct: 342 IDNKGIRIRELSSLLSSKEADYRNLCSFSDQTKESLELAEAKIQQLEEEVHRTRNDL 398
>01_06_1100 + 34530132-34530485,34530544-34530705
Length = 171
Score = 29.1 bits (62), Expect = 5.2
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 48 VHDNKEFTPGVTLDLSQIPSPSRILGLTGEDTLERALKNSDLIIAAGGLSQRPDISEKAL 107
+H F P L L I P+ ++ L +ALK++D + G+ R +S K L
Sbjct: 51 IHLKLAFLPYGELPLVAIEGPNAVVVLQDWTNAHQALKDNDGWFKSQGMHLRV-VSAKHL 109
Query: 108 LTANSQFIKSIISKLGR 124
TA+S +K + G+
Sbjct: 110 DTAHSVVLKELKKPTGQ 126
>10_08_0982 -
22025279-22027277,22030256-22030488,22031205-22031344,
22032783-22032957
Length = 848
Score = 28.7 bits (61), Expect = 6.8
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 139 NYLIPMTAEIMRNHGVYDEKKLFGITEIDAIRSQCLYATENNL 181
N +P ++ N DEKK+ GI + +++ L+ E+NL
Sbjct: 775 NGTMPKLENLLVNFTDNDEKKIIGIRHLTSLKEVQLWGNESNL 817
>02_04_0610 + 24335153-24337724,24337835-24338256
Length = 997
Score = 28.7 bits (61), Expect = 6.8
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 111 NSQFIKSIISKLGRSCPIPFVGIVTEPINYLIPMTAEIMRNHGVYDEKKLFGITEIDAI 169
+S ++S + LG SCP +G+ I Y+ P AE N Y + FGI ++ +
Sbjct: 826 SSLVLESKFASLGHSCPNSLIGL-KGTIGYIAPEYAE-CGNASTYGDVYGFGIVLLEML 882
>01_06_0959 -
33362810-33363125,33363309-33363475,33363583-33364410,
33364483-33364719,33365455-33365871,33365951-33366412,
33367197-33367382
Length = 870
Score = 28.3 bits (60), Expect = 9.0
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 276 GTSYFSSLVNLDKNGVKEMVRYSEFSKFEC 305
G S +S+ + D++G ++ V+++ F K EC
Sbjct: 44 GASLVNSIASHDEDGSRDQVQWAGFDKLEC 73
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.135 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,313,837
Number of Sequences: 37544
Number of extensions: 327664
Number of successful extensions: 752
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 726
Number of HSP's gapped (non-prelim): 19
length of query: 329
length of database: 14,793,348
effective HSP length: 82
effective length of query: 247
effective length of database: 11,714,740
effective search space: 2893540780
effective search space used: 2893540780
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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