BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA000994-TA|BGIBMGA000994-PA|IPR010097|Malate dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria, IPR001236|Lactate/malate dehydrogenase (329 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_4308| Best HMM Match : Ldh_1_C (HMM E-Value=2.6e-31) 75 6e-14 SB_32263| Best HMM Match : Ldh_1_C (HMM E-Value=8.80015e-42) 33 0.24 SB_26858| Best HMM Match : ANF_receptor (HMM E-Value=2.4e-15) 30 3.0 SB_22486| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0 SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2 SB_57817| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2 SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064) 29 5.2 SB_25280| Best HMM Match : Subtilisin_N (HMM E-Value=6.4) 29 5.2 SB_11101| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2 SB_5219| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2 >SB_4308| Best HMM Match : Ldh_1_C (HMM E-Value=2.6e-31) Length = 368 Score = 75.4 bits (177), Expect = 6e-14 Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 17/147 (11%) Query: 159 KLFGITEIDAIRSQCLYATENNLKANDCYVPVIGGHSDKTIVPLLSQAKPTVEMKEKDLE 218 K+ G+T +D +R+ A L N+ +PVIGGHS TI+PLLSQ P V + +LE Sbjct: 109 KILGVTTLDIVRAHTFVAEAKGLDVNNIKIPVIGGHSGVTILPLLSQTTPNVTFTQDELE 168 Query: 219 EFTIKLRNCDGMITKAKRGCIPNLSVAYSSFLFTKSILDALEGSPAKIH-AFVDNNDFGT 277 + T +++N + AK G ++++AL G + AF+ ++ Sbjct: 169 KLTDRIQNAGTEVVNAKAG----------------AVIEALNGKKDVVQCAFIKSDLTEA 212 Query: 278 SYFSSLVNLDKNGVKEMVRYSEFSKFE 304 YF++ V L NGV++ + + S +E Sbjct: 213 GYFATPVVLGTNGVEKNLGMGKLSDYE 239 >SB_32263| Best HMM Match : Ldh_1_C (HMM E-Value=8.80015e-42) Length = 411 Score = 33.5 bits (73), Expect = 0.24 Identities = 39/159 (24%), Positives = 65/159 (40%), Gaps = 13/159 (8%) Query: 57 GVTLDLSQIPSPSRILGLTGEDTLERALKNSDLIIAAGGLSQRPDISEKALLTANSQFI- 115 GV L+L P + + D E+A + D+ I G + +R + K LL+AN++ Sbjct: 130 GVVLELQDCAIPL-LHEVVATDDAEKAFTDIDVAILVGAMPRREGMERKDLLSANAKIFE 188 Query: 116 ---KSIISKLGRSCPIPFVGIVTEPINYLIPMTAEIMRNHGVYDEKKLFG-ITEIDAIRS 171 K++ ++C I VG P N I + K+ F +T +D R Sbjct: 189 AQGKALDKVAKKTCKILVVG---NPAN----TNCLIAQRWAPSIPKENFSCLTRLDQNRG 241 Query: 172 QCLYATENNLKANDCYVPVIGGHSDKTIVPLLSQAKPTV 210 A NL+ + +I G+ T P ++ K V Sbjct: 242 GSQIAGRLNLRVDQVKNVIIWGNHSATQYPDVNHGKVCV 280 >SB_26858| Best HMM Match : ANF_receptor (HMM E-Value=2.4e-15) Length = 846 Score = 29.9 bits (64), Expect = 3.0 Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 8/98 (8%) Query: 171 SQCLYATENNLKANDCYVPVIGGHS------DKTIVPLLSQAKPTVEMKEKDLEEFTIKL 224 + C T+ +L C +PV+ S +KT PL QA PT + + L E +K Sbjct: 482 ASCRGQTKYDLTTAGCGIPVVSFTSAPDQLLNKTQYPLFVQAAPTYTAQGRALAEIVLKY 541 Query: 225 RNCDGMITKAKRGCIPNLSVAYSSFLFTKSILDALEGS 262 + I ++ L+ A + + ++ I AL GS Sbjct: 542 KWTQVGIVSSETSFASGLTGAVQAHMKSRGI--ALSGS 577 >SB_22486| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 497 Score = 29.5 bits (63), Expect = 4.0 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Query: 127 PIPFVGIV-TEPINYLIPMTAEIMRNHGVYDEKKLFGITEIDAIRSQCLYATENNLKAND 185 P+PF+ I+ T + L T + M + E+K G T++ +R NLKA Sbjct: 205 PLPFMIIMYTLALKNLYSTTDKAMGMVNLLTERKNAGFTDVFLVRQNVRRDNMQNLKATK 264 Query: 186 CYVPVI 191 +V V+ Sbjct: 265 MFVTVV 270 >SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 3486 Score = 29.1 bits (62), Expect = 5.2 Identities = 15/48 (31%), Positives = 23/48 (47%) Query: 180 NLKANDCYVPVIGGHSDKTIVPLLSQAKPTVEMKEKDLEEFTIKLRNC 227 +LK C V ++ G S K L + E EK E+ +K++NC Sbjct: 3404 DLKLVRCLVSIVLGISSKAQKQSLEEIHRMKEEMEKSFEDKVVKIQNC 3451 >SB_57817| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 210 Score = 29.1 bits (62), Expect = 5.2 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%) Query: 159 KLFGIT-EIDAIRSQCLYATENNLKANDCY 187 KL G+T E+ ++ CL+A +NN A+ CY Sbjct: 168 KLQGLTIELFVDKTTCLHAIDNNSSASQCY 197 >SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064) Length = 1064 Score = 29.1 bits (62), Expect = 5.2 Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 7/88 (7%) Query: 243 SVAYSSFLFTKSILD-ALEGSPAKIHAFVDNNDFGTSYFSSLVN-LDK---NGVKEMVRY 297 S Y ++ + D +L+ P+ + ++ ND YFS L N K NG+K VR+ Sbjct: 417 SKEYQGYVHQVGLDDVSLKFCPSLVQYVIEINDLQWMYFSVLCNSFHKSYINGMKVQVRF 476 Query: 298 SEFSKFECDLIEKSLQQLRKDVSKGRKI 325 + F++ L+ ++L +L DV K R++ Sbjct: 477 T-FTRTPLKLMHRAL-ELPCDVIKMRQL 502 >SB_25280| Best HMM Match : Subtilisin_N (HMM E-Value=6.4) Length = 140 Score = 29.1 bits (62), Expect = 5.2 Identities = 15/48 (31%), Positives = 23/48 (47%) Query: 180 NLKANDCYVPVIGGHSDKTIVPLLSQAKPTVEMKEKDLEEFTIKLRNC 227 +LK C V ++ G S K L + E EK E+ +K++NC Sbjct: 90 DLKLVRCLVSIVLGISSKAQKQSLEEIHRMKEEMEKSFEDKVVKIQNC 137 >SB_11101| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 210 Score = 29.1 bits (62), Expect = 5.2 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%) Query: 159 KLFGIT-EIDAIRSQCLYATENNLKANDCY 187 KL G+T E+ ++ CL+A +NN A+ CY Sbjct: 168 KLQGLTIELFVDKTTCLHAIDNNSSASQCY 197 >SB_5219| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 201 Score = 29.1 bits (62), Expect = 5.2 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 4/61 (6%) Query: 176 ATENNLKANDCYVPVIGGHSDKTIVPLLSQAKPTVEMKEKDLEEFTIKLRNCDGMITKAK 235 A ENN + ND + IG H ++T+ P +S A PT + K + +K R+ TK K Sbjct: 38 AVENN-QVNDRDIERIG-HVNETVEPQVSGASPTRQSSSK--KYMGLKRRSFAYFYTKLK 93 Query: 236 R 236 R Sbjct: 94 R 94 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.135 0.377 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 9,740,110 Number of Sequences: 59808 Number of extensions: 393496 Number of successful extensions: 877 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 871 Number of HSP's gapped (non-prelim): 12 length of query: 329 length of database: 16,821,457 effective HSP length: 82 effective length of query: 247 effective length of database: 11,917,201 effective search space: 2943548647 effective search space used: 2943548647 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits) S2: 60 (28.3 bits)
- SilkBase 1999-2023 -