GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000994-TA|BGIBMGA000994-PA|IPR010097|Malate
dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria,
IPR001236|Lactate/malate dehydrogenase
         (329 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    24   1.8  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    22   5.4  
AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    22   7.1  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    22   7.1  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 203 LSQAKPTVEMKEKDLEEFTIKLRNCDGMI 231
           + +AK  V+   K  E+FT+  RN D +I
Sbjct: 694 VEEAKTFVDRCYKMQEQFTLNFRNSDELI 722


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)

Query: 196 DKTIVPLLSQAKPTVEMKEKDLEEFTIKLRNCDGMIT 232
           D++I PLL+      E+   +++ F  ++ N D  IT
Sbjct: 343 DESIKPLLTLNSVPTEIYNLEIQRFIQQIGNSDIAIT 379


>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 3   VNRRIISSLFTTTRSYQVTVV 23
           VNR++ISS  T+  +Y V ++
Sbjct: 386 VNRKLISSTVTSIATYLVMLM 406


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 3   VNRRIISSLFTTTRSYQVTVV 23
           VNR++ISS  T+  +Y V ++
Sbjct: 386 VNRKLISSTVTSIATYLVMLM 406


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.135    0.377 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 67,028
Number of Sequences: 317
Number of extensions: 2719
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 4
length of query: 329
length of database: 114,650
effective HSP length: 57
effective length of query: 272
effective length of database: 96,581
effective search space: 26270032
effective search space used: 26270032
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 43 (21.4 bits)