Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000994-TA|BGIBMGA000994-PA|IPR010097|Malate
dehydrogenase, NAD-dependent, eukaryotes and gamma proteobacteria,
IPR001236|Lactate/malate dehydrogenase
(329 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4308| Best HMM Match : Ldh_1_C (HMM E-Value=2.6e-31) 75 6e-14
SB_32263| Best HMM Match : Ldh_1_C (HMM E-Value=8.80015e-42) 33 0.24
SB_26858| Best HMM Match : ANF_receptor (HMM E-Value=2.4e-15) 30 3.0
SB_22486| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_57817| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064) 29 5.2
SB_25280| Best HMM Match : Subtilisin_N (HMM E-Value=6.4) 29 5.2
SB_11101| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_5219| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
>SB_4308| Best HMM Match : Ldh_1_C (HMM E-Value=2.6e-31)
Length = 368
Score = 75.4 bits (177), Expect = 6e-14
Identities = 45/147 (30%), Positives = 75/147 (51%), Gaps = 17/147 (11%)
Query: 159 KLFGITEIDAIRSQCLYATENNLKANDCYVPVIGGHSDKTIVPLLSQAKPTVEMKEKDLE 218
K+ G+T +D +R+ A L N+ +PVIGGHS TI+PLLSQ P V + +LE
Sbjct: 109 KILGVTTLDIVRAHTFVAEAKGLDVNNIKIPVIGGHSGVTILPLLSQTTPNVTFTQDELE 168
Query: 219 EFTIKLRNCDGMITKAKRGCIPNLSVAYSSFLFTKSILDALEGSPAKIH-AFVDNNDFGT 277
+ T +++N + AK G ++++AL G + AF+ ++
Sbjct: 169 KLTDRIQNAGTEVVNAKAG----------------AVIEALNGKKDVVQCAFIKSDLTEA 212
Query: 278 SYFSSLVNLDKNGVKEMVRYSEFSKFE 304
YF++ V L NGV++ + + S +E
Sbjct: 213 GYFATPVVLGTNGVEKNLGMGKLSDYE 239
>SB_32263| Best HMM Match : Ldh_1_C (HMM E-Value=8.80015e-42)
Length = 411
Score = 33.5 bits (73), Expect = 0.24
Identities = 39/159 (24%), Positives = 65/159 (40%), Gaps = 13/159 (8%)
Query: 57 GVTLDLSQIPSPSRILGLTGEDTLERALKNSDLIIAAGGLSQRPDISEKALLTANSQFI- 115
GV L+L P + + D E+A + D+ I G + +R + K LL+AN++
Sbjct: 130 GVVLELQDCAIPL-LHEVVATDDAEKAFTDIDVAILVGAMPRREGMERKDLLSANAKIFE 188
Query: 116 ---KSIISKLGRSCPIPFVGIVTEPINYLIPMTAEIMRNHGVYDEKKLFG-ITEIDAIRS 171
K++ ++C I VG P N I + K+ F +T +D R
Sbjct: 189 AQGKALDKVAKKTCKILVVG---NPAN----TNCLIAQRWAPSIPKENFSCLTRLDQNRG 241
Query: 172 QCLYATENNLKANDCYVPVIGGHSDKTIVPLLSQAKPTV 210
A NL+ + +I G+ T P ++ K V
Sbjct: 242 GSQIAGRLNLRVDQVKNVIIWGNHSATQYPDVNHGKVCV 280
>SB_26858| Best HMM Match : ANF_receptor (HMM E-Value=2.4e-15)
Length = 846
Score = 29.9 bits (64), Expect = 3.0
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 8/98 (8%)
Query: 171 SQCLYATENNLKANDCYVPVIGGHS------DKTIVPLLSQAKPTVEMKEKDLEEFTIKL 224
+ C T+ +L C +PV+ S +KT PL QA PT + + L E +K
Sbjct: 482 ASCRGQTKYDLTTAGCGIPVVSFTSAPDQLLNKTQYPLFVQAAPTYTAQGRALAEIVLKY 541
Query: 225 RNCDGMITKAKRGCIPNLSVAYSSFLFTKSILDALEGS 262
+ I ++ L+ A + + ++ I AL GS
Sbjct: 542 KWTQVGIVSSETSFASGLTGAVQAHMKSRGI--ALSGS 577
>SB_22486| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 497
Score = 29.5 bits (63), Expect = 4.0
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 127 PIPFVGIV-TEPINYLIPMTAEIMRNHGVYDEKKLFGITEIDAIRSQCLYATENNLKAND 185
P+PF+ I+ T + L T + M + E+K G T++ +R NLKA
Sbjct: 205 PLPFMIIMYTLALKNLYSTTDKAMGMVNLLTERKNAGFTDVFLVRQNVRRDNMQNLKATK 264
Query: 186 CYVPVI 191
+V V+
Sbjct: 265 MFVTVV 270
>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3486
Score = 29.1 bits (62), Expect = 5.2
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 180 NLKANDCYVPVIGGHSDKTIVPLLSQAKPTVEMKEKDLEEFTIKLRNC 227
+LK C V ++ G S K L + E EK E+ +K++NC
Sbjct: 3404 DLKLVRCLVSIVLGISSKAQKQSLEEIHRMKEEMEKSFEDKVVKIQNC 3451
>SB_57817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 29.1 bits (62), Expect = 5.2
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 159 KLFGIT-EIDAIRSQCLYATENNLKANDCY 187
KL G+T E+ ++ CL+A +NN A+ CY
Sbjct: 168 KLQGLTIELFVDKTTCLHAIDNNSSASQCY 197
>SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)
Length = 1064
Score = 29.1 bits (62), Expect = 5.2
Identities = 26/88 (29%), Positives = 46/88 (52%), Gaps = 7/88 (7%)
Query: 243 SVAYSSFLFTKSILD-ALEGSPAKIHAFVDNNDFGTSYFSSLVN-LDK---NGVKEMVRY 297
S Y ++ + D +L+ P+ + ++ ND YFS L N K NG+K VR+
Sbjct: 417 SKEYQGYVHQVGLDDVSLKFCPSLVQYVIEINDLQWMYFSVLCNSFHKSYINGMKVQVRF 476
Query: 298 SEFSKFECDLIEKSLQQLRKDVSKGRKI 325
+ F++ L+ ++L +L DV K R++
Sbjct: 477 T-FTRTPLKLMHRAL-ELPCDVIKMRQL 502
>SB_25280| Best HMM Match : Subtilisin_N (HMM E-Value=6.4)
Length = 140
Score = 29.1 bits (62), Expect = 5.2
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 180 NLKANDCYVPVIGGHSDKTIVPLLSQAKPTVEMKEKDLEEFTIKLRNC 227
+LK C V ++ G S K L + E EK E+ +K++NC
Sbjct: 90 DLKLVRCLVSIVLGISSKAQKQSLEEIHRMKEEMEKSFEDKVVKIQNC 137
>SB_11101| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 210
Score = 29.1 bits (62), Expect = 5.2
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 159 KLFGIT-EIDAIRSQCLYATENNLKANDCY 187
KL G+T E+ ++ CL+A +NN A+ CY
Sbjct: 168 KLQGLTIELFVDKTTCLHAIDNNSSASQCY 197
>SB_5219| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 29.1 bits (62), Expect = 5.2
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 176 ATENNLKANDCYVPVIGGHSDKTIVPLLSQAKPTVEMKEKDLEEFTIKLRNCDGMITKAK 235
A ENN + ND + IG H ++T+ P +S A PT + K + +K R+ TK K
Sbjct: 38 AVENN-QVNDRDIERIG-HVNETVEPQVSGASPTRQSSSK--KYMGLKRRSFAYFYTKLK 93
Query: 236 R 236
R
Sbjct: 94 R 94
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.135 0.377
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,740,110
Number of Sequences: 59808
Number of extensions: 393496
Number of successful extensions: 877
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 871
Number of HSP's gapped (non-prelim): 12
length of query: 329
length of database: 16,821,457
effective HSP length: 82
effective length of query: 247
effective length of database: 11,917,201
effective search space: 2943548647
effective search space used: 2943548647
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)
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