Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000993-TA|BGIBMGA000993-PA|IPR009003|Peptidase,
trypsin-like serine and cysteine
(443 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ... 35 0.094
At3g28770.1 68416.m03591 expressed protein 34 0.16
At2g25220.1 68415.m03018 protein kinase family protein contains... 34 0.16
At5g40340.1 68418.m04894 PWWP domain-containing protein KED, Nic... 33 0.29
At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein ... 33 0.29
At4g08710.1 68417.m01439 hypothetical protein contains Pfam prof... 32 0.88
At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing ... 31 1.2
At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing ... 31 1.2
At5g15920.1 68418.m01862 structural maintenance of chromosomes (... 31 1.5
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01... 31 1.5
At5g38720.1 68418.m04683 expressed protein predicted protein, Dr... 31 2.0
At3g53040.1 68416.m05846 late embryogenesis abundant protein, pu... 31 2.0
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains... 31 2.0
At3g10180.1 68416.m01219 kinesin motor protein-related similar t... 31 2.0
At3g02400.1 68416.m00227 forkhead-associated domain-containing p... 31 2.0
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 30 2.7
At5g60530.1 68418.m07590 late embryogenesis abundant protein-rel... 30 2.7
At1g11420.1 68414.m01312 agenet domain-containing protein contai... 30 2.7
At2g22140.1 68415.m02630 expressed protein ; expression supporte... 30 3.6
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 30 3.6
At5g19480.1 68418.m02321 expressed protein 29 4.7
At1g67230.1 68414.m07652 expressed protein 29 4.7
At5g57480.1 68418.m07183 AAA-type ATPase family protein contains... 29 6.2
At5g53800.1 68418.m06685 expressed protein 29 6.2
At3g26932.1 68416.m03370 double-stranded RNA-binding domain (DsR... 29 6.2
At3g06020.1 68416.m00687 expressed protein ; expression supporte... 29 6.2
At3g05900.1 68416.m00664 neurofilament protein-related similar t... 29 6.2
At2g41960.1 68415.m05191 expressed protein 29 6.2
At1g29990.1 68414.m03668 prefoldin, putative similar to Swiss-Pr... 29 6.2
At5g58590.1 68418.m07342 Ran-binding protein 1, putative / RanBP... 29 8.2
At5g27120.1 68418.m03237 SAR DNA-binding protein, putative stron... 29 8.2
At4g33500.1 68417.m04758 protein phosphatase 2C-related / PP2C-r... 29 8.2
At4g07493.1 68417.m01156 hypothetical protein 29 8.2
At3g28580.1 68416.m03568 AAA-type ATPase family protein contains... 29 8.2
At2g22560.1 68415.m02674 kinase interacting protein-related simi... 29 8.2
>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
protein heterogeneous nuclear ribonucleoprotein R, Homo
sapiens, PIR:T02673; contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
Length = 471
Score = 35.1 bits (77), Expect = 0.094
Identities = 17/57 (29%), Positives = 29/57 (50%)
Query: 360 SEARATTKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETK 416
SE R N +EI + E + +E +EEE + +V VE ++E++D T+
Sbjct: 17 SEERVDLDGDNDPEEILEEEVEYEEVEEEEIEEIEEEIEEEVEVEEEEEEEDAVATE 73
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 34.3 bits (75), Expect = 0.16
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 366 TKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETKIVKLSSAAD 425
+K SN K + D E + N K+ E ++E + N + ++E+KD+KE K + S++ +
Sbjct: 951 SKNSNMKKK-EEDKKEYVNNELKKQEDNKKETTKSENSKLKEENKDNKEKKESEDSASKN 1009
Query: 426 R 426
R
Sbjct: 1010 R 1010
Score = 33.5 bits (73), Expect = 0.29
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 361 EARATTKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETKIVKL 420
E++ KT ++ +R + EN++ ++K E VE+ K++ E KD+K KL
Sbjct: 754 ESKENKKTKTNENRVR-NKEENVQGNKKESEKVEKGEKKESKDAKSVETKDNK-----KL 807
Query: 421 SSAADRNSA 429
SS +R+ A
Sbjct: 808 SSTENRDEA 816
Score = 31.9 bits (69), Expect = 0.88
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 370 NQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETK 416
+ KD+ + E + K+L+ EE+ K++ +VE K+ K+ K+ K
Sbjct: 1185 SSKDQQKKKEKEMKESEEKKLKKNEEDRKKQTSVEENKKQKETKKEK 1231
Score = 28.7 bits (61), Expect = 8.2
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 361 EARATTKTSN-QKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETKIVK 419
E + T TS+ QK + + + +NS + + EE+ K VN E +K++ + KET +
Sbjct: 928 ENKDTINTSSKQKGKDKKKKKKESKNSNMKKK--EEDKKEYVNNELKKQEDNKKETTKSE 985
Query: 420 LSSAADRN 427
S + N
Sbjct: 986 NSKLKEEN 993
Score = 28.7 bits (61), Expect = 8.2
Identities = 20/72 (27%), Positives = 42/72 (58%), Gaps = 7/72 (9%)
Query: 361 EARATTKTSNQKD-EIRADSTENLR----NSRKRLEHVEEEAKRKVNVEAQKEDKDHKET 415
E+++ K ++KD E D N + N +K+ +HV+ K++ + + +KE+++ ET
Sbjct: 1107 ESKSRKKEEDKKDMEKLEDQNSNKKKEDKNEKKKSQHVKL-VKKESDKKEKKENEEKSET 1165
Query: 416 KIVKLSSAADRN 427
K ++ SS + +N
Sbjct: 1166 KEIE-SSKSQKN 1176
>At2g25220.1 68415.m03018 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 383
Score = 34.3 bits (75), Expect = 0.16
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 382 NLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETKIVKLSSAADRNSAIHCY 433
N++ + K++E+V +EAKR+ E K H I L SA++ NS+ Y
Sbjct: 119 NVKAAVKKIENVSQEAKREFQNEVDLLSKIHHSNVISLLGSASEINSSFIVY 170
>At5g40340.1 68418.m04894 PWWP domain-containing protein KED,
Nicotiana tabacum, EMBL:AB009883
Length = 1008
Score = 33.5 bits (73), Expect = 0.29
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 360 SEARATTKTSNQKDEIRADSTENLRN---SRKRLEHVEEEAKRKVNVEAQKEDKDHKETK 416
S+ ++ + QK+ + E R S+K+ E VEEE RK +VE+ K+++ K+ K
Sbjct: 768 SKKQSDGEEETQKEPSESTKKERKRKNPESKKKAEAVEEEETRKESVESTKKERKRKKPK 827
>At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein
NAP57, putative similar to SP|P40615 Dyskerin (Nucleolar
protein NAP57) {Rattus norvegicus}; contains Pfam
profiles PF01509: TruB family pseudouridylate synthase
(N terminal domain), PF01472: PUA domain; supporting
cDNA gi|8901185|gb|AF234984.2|AF234984
Length = 565
Score = 33.5 bits (73), Expect = 0.29
Identities = 20/69 (28%), Positives = 34/69 (49%)
Query: 360 SEARATTKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETKIVK 419
S A TTK S K+ ++ E +++S+K+ + +EE K + +KE K K+ K
Sbjct: 450 SPAPVTTKKSKTKEVEGEEAEEKVKSSKKKKKKDKEEEKEEEAGSEKKEKKKKKDKKEEV 509
Query: 420 LSSAADRNS 428
+ A S
Sbjct: 510 IEEVASPKS 518
>At4g08710.1 68417.m01439 hypothetical protein contains Pfam profile
PF03384: Drosophila protein of unknown function, DUF287
Length = 715
Score = 31.9 bits (69), Expect = 0.88
Identities = 24/111 (21%), Positives = 34/111 (30%), Gaps = 4/111 (3%)
Query: 308 PKSTEKTFENITATSALPETVTEEGEIXXXXXXXXXXXXXXXXXXXXXXLPTSEARATTK 367
P K T S ET T E PT E TK
Sbjct: 3 PLKKRKRGVGTTVKSTTEETATATKETAPATKETAPATKETAPTITKETAPTKETAPATK 62
Query: 368 ----TSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKE 414
T ++ + EN+ E EEE K + E +E+++ +E
Sbjct: 63 ETAPTRTEEPSLTEQDPENVEEEESEEEEKEEEEKEEEEEEEGEEEEEEEE 113
>At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 31.5 bits (68), Expect = 1.2
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 359 TSEARATTKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKV-NVEAQ-----KEDKDH 412
T+ T +K + E LR ++ LE E ++K+ +E Q +E+ D
Sbjct: 578 TTSGPKVTPLQQKKADTLERLKETLRKKQEMLEQKRNEYRKKLATLEKQGTVVKREEADE 637
Query: 413 KETKIVKLSSAADRNSAI 430
+ K VKL +A+D +AI
Sbjct: 638 PDAKRVKLDTASDSGAAI 655
>At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing
protein contains Pfam profile: PF00076 RNA recognition
motif
Length = 908
Score = 31.5 bits (68), Expect = 1.2
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 359 TSEARATTKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKV-NVEAQ-----KEDKDH 412
T+ T +K + E LR ++ LE E ++K+ +E Q +E+ D
Sbjct: 578 TTSGPKVTPLQQKKADTLERLKETLRKKQEMLEQKRNEYRKKLATLEKQGTVVKREEADE 637
Query: 413 KETKIVKLSSAADRNSAI 430
+ K VKL +A+D +AI
Sbjct: 638 PDAKRVKLDTASDSGAAI 655
>At5g15920.1 68418.m01862 structural maintenance of chromosomes
(SMC) family protein (MSS2) similar to SMC-related
protein MSS2 [Arabidopsis thaliana] GI:9965743; contains
Pfam profiles PF02483: SMC family C-terminal domain,
PF02463: RecF/RecN/SMC N terminal domain
Length = 1053
Score = 31.1 bits (67), Expect = 1.5
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 378 DSTENLRNSRKRLEHVEEEAKR-KVNVEAQKEDKDHKETKIVKLSSAADRNSAIHCYL 434
D+ + ++ + K+L+ + K +E QK++K ++K K+ + D N C+L
Sbjct: 255 DAKKRMKEAEKKLDEAAKNLNSMKEPIEKQKKEKAETDSKCKKVKNLMDANGRNRCHL 312
>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01612:
reticulocyte binding protein; contains TIGRFAM TIGR00864:
polycystin cation channel protein; similar to
fimbriae-associated protein Fap1 [Streptococcus
parasanguinis] (GI:3929312)
Length = 1498
Score = 31.1 bits (67), Expect = 1.5
Identities = 14/56 (25%), Positives = 31/56 (55%)
Query: 361 EARATTKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETK 416
E R + + K++ R + + + +R + EE+AK + ++AQKE ++ ++ K
Sbjct: 1224 EKRKQKEAAKMKEQHRLEEIAKAKEAMERKKKREEKAKARAVLKAQKEAEEREKVK 1279
>At5g38720.1 68418.m04683 expressed protein predicted protein,
Drosophila melanogaster
Length = 306
Score = 30.7 bits (66), Expect = 2.0
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 366 TKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETKIVKLSS 422
TK + +EI S E+L+ K + K+K+++ ++KE+K +E + ++SS
Sbjct: 111 TKKKRKAEEITRSSVEDLKRESK---FKKSNKKKKMDMTSKKENKIEEEEDVYQISS 164
>At3g53040.1 68416.m05846 late embryogenesis abundant protein,
putative / LEA protein, putative similar to LEA protein
in group 3 [Arabidopsis thaliana] GI:1526424; contains
Pfam profile PF02987: Late embryogenesis abundant
protein
Length = 479
Score = 30.7 bits (66), Expect = 2.0
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 363 RATTKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRK---VNVEAQKEDKDHKETKIVK 419
RA S + +E + + E ++++++ EEA+RK + +E +K D+D
Sbjct: 305 RAMGFLSGKTEETKQKAVETKDTAKEKMDEAGEEARRKMEEMRLEGKKLDEDASRKTQQS 364
Query: 420 LSSAADR 426
SAAD+
Sbjct: 365 TESAADK 371
>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
PROSITE domains, PS00674: AAA-protein family signature
and PS00017: ATP/GTP-binding site motif A (P-loop)
Length = 1954
Score = 30.7 bits (66), Expect = 2.0
Identities = 19/61 (31%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 359 TSEARATTKTSNQKDEIRADSTENLR-NSRKRLEHVEEEA-KRKVNVEAQKE-DKDHKET 415
+ + + + TSN +DE ++S E+++ +S R ++ E++A KR V +E++ E + D ET
Sbjct: 191 SEDVQKESDTSNSEDESASESEESMQADSAAREKYQEKKATKRSVFLESENEAEVDRTET 250
Query: 416 K 416
+
Sbjct: 251 E 251
>At3g10180.1 68416.m01219 kinesin motor protein-related similar to
centromere protein E GB:4502781 [Homo sapiens]
Length = 1348
Score = 30.7 bits (66), Expect = 2.0
Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 378 DSTENLRNSRKRLEHVEEE-AKRKVNVEAQKEDKDHKETKIVKL 420
D TE L +S +LEH++ + + K +E D+ ET + +L
Sbjct: 947 DLTEKLEHSNTKLEHLQNDVTELKTRLEVSSSDQQQLETNVKQL 990
>At3g02400.1 68416.m00227 forkhead-associated domain-containing
protein / FHA domain-containing protein / AT hook
motif-containing protein contains Pfam profiles PF00498:
FHA domain, PF02178: AT hook motif
Length = 585
Score = 30.7 bits (66), Expect = 2.0
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 361 EARATTKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQK-EDKDHKETK 416
E A S + D+I E + KR+E VE E ++K VE K DK+ ET+
Sbjct: 364 ENEAQEGCSGRSDDICDQEDEKECDGSKRVEQVEIELRKKSTVEGLKCTDKEDGETE 420
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 30.3 bits (65), Expect = 2.7
Identities = 14/51 (27%), Positives = 33/51 (64%), Gaps = 1/51 (1%)
Query: 368 TSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETKIV 418
T++++DE+ A+ E + +K+ + E +++ + VE ++E+K +ET I+
Sbjct: 102 TNDEEDEVIAEEEEPKKKKKKQRKDTEAKSEEE-EVEDKEEEKKLEETSIM 151
>At5g60530.1 68418.m07590 late embryogenesis abundant
protein-related / LEA protein-related similar to late
embryogenesis abundant protein [Picea glauca] GI:1350543
Length = 439
Score = 30.3 bits (65), Expect = 2.7
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 361 EARATTKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDH--KETKIV 418
+A K +KD+ + + R +++ + +E+E K K E ++++K+ KE K
Sbjct: 70 KAAKDKKEKEKKDKEEKEKKDKERKEKEKKDKLEKEKKDKERKEKERKEKERKAKEKKDK 129
Query: 419 KLSSAADR 426
+ S AA R
Sbjct: 130 EESEAAAR 137
>At1g11420.1 68414.m01312 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 604
Score = 30.3 bits (65), Expect = 2.7
Identities = 20/60 (33%), Positives = 27/60 (45%)
Query: 365 TTKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETKIVKLSSAA 424
T + S K E + L K +E +EA K EA+KE KD KI ++ S A
Sbjct: 523 TNEFSKAKQEFDDMEQKILEVKHKIIELQRQEAALKEQKEAEKEQKDAAWKKICQMESCA 582
>At2g22140.1 68415.m02630 expressed protein ; expression supported
by MPSS
Length = 506
Score = 29.9 bits (64), Expect = 3.6
Identities = 17/74 (22%), Positives = 34/74 (45%)
Query: 357 LPTSEARATTKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETK 416
LP K +++D+ A + LR ++RLE +A+ +KE K ++ K
Sbjct: 174 LPVPGEALPKKRQSKEDKTSAMEEKKLRKEQERLEKAASKAEEAERKRLEKEKKKWEKGK 233
Query: 417 IVKLSSAADRNSAI 430
+ S A+ ++ +
Sbjct: 234 LALKSIVAEIDTKV 247
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.9 bits (64), Expect = 3.6
Identities = 13/56 (23%), Positives = 31/56 (55%)
Query: 361 EARATTKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETK 416
+AR + ++ E + E+ R R+R E ++E++R+ + + + +D+KE +
Sbjct: 433 DARELERKHRERKERESREDEDRRRRRRREESRDKESRRERDEDDHRSHRDYKERR 488
>At5g19480.1 68418.m02321 expressed protein
Length = 207
Score = 29.5 bits (63), Expect = 4.7
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 357 LPTSEARATTKTSNQKDEIRADSTENLRNSRKR---LEHVEEEAKRKVNVEAQKEDKDHK 413
LP +E A T S K E + ++ ++ K+ EH + + K K ++ + +DKD
Sbjct: 105 LPPAEKGAPTTVSKSKSESKDKDRKHRKHKDKKEKDREHKKHKHKHKDRIKDKDKDKDRD 164
Query: 414 ETK 416
+ K
Sbjct: 165 KKK 167
>At1g67230.1 68414.m07652 expressed protein
Length = 1132
Score = 29.5 bits (63), Expect = 4.7
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 361 EARATTKTSNQKDEIRA--DSTEN---LRNSRKRLEHVEEEAKRKV-NVEAQKEDKDHKE 414
EAR DE +A DST+ L +KR + +++ K KV VE ++ + H E
Sbjct: 331 EAREKMAVQQLVDEHQAKLDSTQREFELEMEQKR-KSIDDSLKSKVAEVEKREAEWKHME 389
Query: 415 TKIVKLSSAADRNSAIH 431
K+ K A DR H
Sbjct: 390 EKVAKREQALDRKLEKH 406
Score = 29.1 bits (62), Expect = 6.2
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 381 ENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETKIVK 419
E+LR ++L+ EE + + Q+ED+ ++ KI+K
Sbjct: 230 EDLREWERKLQEGEERVAKSQMIVKQREDRANESDKIIK 268
>At5g57480.1 68418.m07183 AAA-type ATPase family protein contains
Pfam profile: PF00004 ATPase family
Length = 520
Score = 29.1 bits (62), Expect = 6.2
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Query: 390 LEHVEEEAKRKVNVEAQKEDKDHKETKI 417
LE VEE+ KR +++Q ED+DH E +I
Sbjct: 483 LEVVEEQEKRA--IDSQNEDEDHDEEEI 508
>At5g53800.1 68418.m06685 expressed protein
Length = 351
Score = 29.1 bits (62), Expect = 6.2
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 359 TSEARATTKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETK 416
+S++ + +++ E E R RKR E EEE +RK + + K +K K
Sbjct: 107 SSDSESESESEYSDSEESESEDERRRRKRKRKEREEEEKERKRRRREKDKKKRNKSDK 164
>At3g26932.1 68416.m03370 double-stranded RNA-binding domain
(DsRBD)-containing protein contains Pfam profile
PF00035: Double-stranded RNA binding motif
Length = 301
Score = 29.1 bits (62), Expect = 6.2
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 357 LPTSEARATTKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETK 416
L T+EA +++ + R + T+ + LE +E A++K +++ K + K +
Sbjct: 167 LYTNEASSSSPPPQRFWPSRTNLTQEQSKVKSLLEKCQEYAEKKQSLDDPKPEMRIKTSS 226
Query: 417 IVKLSSAADRNSAIHCYLFGLMFWHFI 443
LSS+ +RN CY L F F+
Sbjct: 227 PSPLSSSVERN----CYSKLLPFPSFV 249
>At3g06020.1 68416.m00687 expressed protein ; expression supported
by MPSS
Length = 300
Score = 29.1 bits (62), Expect = 6.2
Identities = 12/61 (19%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 360 SEARATTKTSNQKDEIRADSTENLRNSRKRL-EHVEEEAKRKVNVEAQKEDKDHKETKIV 418
S+ T+T +K+E ++ E +R++ + + E+ EEE +++ ++ + +K + + +
Sbjct: 221 SDDHIETETKEEKEEEEEETIETVRDNEEEIPEYKEEEEEKEEEIKVKGVEKVQRSRRCI 280
Query: 419 K 419
+
Sbjct: 281 E 281
>At3g05900.1 68416.m00664 neurofilament protein-related similar to
NF-180 (GI:632549) [Petromyzon marinus] similar to
Neurofilament triplet H protein (200 kDa neurofilament
protein) (Neurofilament heavy polypeptide) (NF-H)
(Swiss-Prot:P12036) [Homo sapiens]
Length = 673
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 395 EEAKRKVNVEA--QKEDKDHKETKIVKLSSAA 424
E+A+ K VE+ ++E KD +ETKIV +S +A
Sbjct: 177 EKAEEKPTVESVVEEETKDREETKIVDVSESA 208
>At2g41960.1 68415.m05191 expressed protein
Length = 1215
Score = 29.1 bits (62), Expect = 6.2
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 372 KDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETK 416
++E + E R RKR++ E++ +RK ++ ++ +K+ K K
Sbjct: 502 EEEEKEKREEEERKERKRIKEREKKLRRKERLKEKEREKEQKNPK 546
>At1g29990.1 68414.m03668 prefoldin, putative similar to
Swiss-Prot:O15212 prefoldin subunit 6 (Protein Ke2)
[Homo sapiens]
Length = 129
Score = 29.1 bits (62), Expect = 6.2
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 375 IRADSTENLRNSRKRLEHVEEEAKR-KVNVEAQKEDKDHKETKIVKL 420
++ D E N RKR+E++ E KR ++ +E +++K I+KL
Sbjct: 69 VKQDLAEANANVRKRIEYISAELKRLDAILQDMEEKQNNKRETIMKL 115
>At5g58590.1 68418.m07342 Ran-binding protein 1, putative / RanBP1,
putative strong similarity to Ran binding proteins from
Arabidopsis thaliana atranbp1a [Arabidopsis thaliana]
GI:2058282, atranbp1b [Arabidopsis thaliana] GI:2058284;
contains Pfam profile PF00638: RanBP1 domain
Length = 219
Score = 28.7 bits (61), Expect = 8.2
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 360 SEARATTKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETKI 417
+E++ K S Q DE A ENL E +EA+ K E KEDK+ K+ K+
Sbjct: 156 AESQQVGKESTQGDEA-AGLIENLSVEENISEEKAKEAEEK---EPAKEDKETKKEKV 209
>At5g27120.1 68418.m03237 SAR DNA-binding protein, putative strong
similarity to SAR DNA-binding protein-1 [Pisum sativum]
GI:3132696; contains Pfam profile PF01798: Putative
snoRNA binding domain
Length = 533
Score = 28.7 bits (61), Expect = 8.2
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 360 SEARATTKTSNQKDEIRADSTEN--LRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETKI 417
+E + K++ +K E ++ E + +K+ +H EEE + + + E K K+T++
Sbjct: 474 TEEPSKKKSNKKKTEAEPETAEEPAKKEKKKKRKHEEEETEMPAKKKEKSEKKKKKKTEV 533
>At4g33500.1 68417.m04758 protein phosphatase 2C-related /
PP2C-related YHR077c (NMD2,IFS1) protein -Saccharomyces
cerevisiae,PID:g555939
Length = 724
Score = 28.7 bits (61), Expect = 8.2
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 367 KTSNQKDEIRADST-ENLRN--SRKRLEHVEEEAKRKVNVEAQKEDKDHKETKIVKLSSA 423
+TS +K+E A S N+ RKR+ ++ K VNV ++ D K + LSS
Sbjct: 136 ETSTEKEETAAPSDLSNVIKIKDRKRVRSPTKKKKETVNVSRSEDKIDAKSASVSNLSSI 195
Query: 424 ADRNSAI 430
AI
Sbjct: 196 VSVAEAI 202
>At4g07493.1 68417.m01156 hypothetical protein
Length = 158
Score = 28.7 bits (61), Expect = 8.2
Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 358 PTSEARATTKTSNQK-DEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETK 416
P R+ +K+S +K +AD T + +RLE V+E++K ++ + + +
Sbjct: 73 PVGNTRSRSKSSARKFSRNKADITRGKKPVGRRLELVDEDSKEEMASPKEADQTERGGDD 132
Query: 417 IVKLSSAADRNSA 429
++ +A RN +
Sbjct: 133 DLESEKSATRNES 145
>At3g28580.1 68416.m03568 AAA-type ATPase family protein contains
Pfam profile: ATPase family PF00004
Length = 500
Score = 28.7 bits (61), Expect = 8.2
Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 383 LRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETKIVKLSSAADRNSAI 430
L+ + L+ +EEAK+KV E ++E+K K+ K+ ++ + ++ I
Sbjct: 451 LKRLIEALKEEKEEAKKKV--EEEEEEKQRKKEKVKEIEAEKEKKKKI 496
>At2g22560.1 68415.m02674 kinase interacting protein-related similar
to kinase interacting protein 1 (GI:13936326) [Petunia
integrifolia]; weak similarity to Myosin II heavy chain,
non muscle (Swiss-Prot:P08799) [Dictyostelium discoideum
Length = 891
Score = 28.7 bits (61), Expect = 8.2
Identities = 18/70 (25%), Positives = 27/70 (38%)
Query: 361 EARATTKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETKIVKL 420
E R T + ++ E+ E K EH E A +N E D K++ L
Sbjct: 252 EVRRTAELDHEIKEMSRKKKELESVKEKIREHFESGANSSLNGTDMAEKVDELVNKVISL 311
Query: 421 SSAADRNSAI 430
SA +A+
Sbjct: 312 ESAVSSQTAL 321
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.132 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,727,211
Number of Sequences: 28952
Number of extensions: 391835
Number of successful extensions: 1657
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1583
Number of HSP's gapped (non-prelim): 84
length of query: 443
length of database: 12,070,560
effective HSP length: 83
effective length of query: 360
effective length of database: 9,667,544
effective search space: 3480315840
effective search space used: 3480315840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
- SilkBase 1999-2023 -