Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000993-TA|BGIBMGA000993-PA|IPR009003|Peptidase,
trypsin-like serine and cysteine
(443 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1098 + 30876785-30876835,30876846-30877171,30877396-308774... 33 0.46
03_05_0176 + 21546952-21547887,21548856-21548921,21549959-215508... 30 3.2
11_06_0289 - 21969248-21973516 30 4.3
09_06_0080 + 20736778-20737005,20737104-20737482,20737572-207376... 29 5.6
01_05_0503 - 22779025-22779397,22779602-22779627 29 5.6
09_04_0122 + 14841742-14841822,14841965-14842171 29 7.4
03_02_0322 + 7448046-7448135,7448402-7448515,7449119-7449437,744... 29 7.4
01_06_0381 + 28878811-28879120,28880189-28880331,28880753-288815... 29 7.4
12_02_0616 - 21246374-21246462,21246605-21247702,21247800-212481... 29 9.8
>04_04_1098 +
30876785-30876835,30876846-30877171,30877396-30877418,
30877687-30879392
Length = 701
Score = 33.1 bits (72), Expect = 0.46
Identities = 17/56 (30%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 359 TSEARATTKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKE 414
+SE+ + +S+ + ++ +DS E+ R S ++L+H E E K++ E +KE + K+
Sbjct: 597 SSESSDYSSSSDSESDVSSDSRED-RKSARQLKHDELERKKRSQDEKRKELEKQKQ 651
>03_05_0176 +
21546952-21547887,21548856-21548921,21549959-21550877,
21551277-21551449,21551927-21552475
Length = 880
Score = 30.3 bits (65), Expect = 3.2
Identities = 16/74 (21%), Positives = 32/74 (43%)
Query: 369 SNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETKIVKLSSAADRNS 428
+ K++ + + LR RK+ + KRK N + K+ + K+ K+ S + S
Sbjct: 785 NQSKEQEQERRMQKLRELRKKKNKRTQRRKRKQNAQVMKQHQFEKQRKLYHAGSFTNSQS 844
Query: 429 AIHCYLFGLMFWHF 442
+ + + HF
Sbjct: 845 YVRSEIHHHLSQHF 858
>11_06_0289 - 21969248-21973516
Length = 1422
Score = 29.9 bits (64), Expect = 4.3
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 367 KTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETKIVK 419
+ ++KDE R D E + R+ +E EE K + E +KE + ++ ++ K
Sbjct: 444 REEDEKDE-RGDGEEEGKEERRDMEKGGEERKEQQQEEQEKEGRKEEQNEVRK 495
>09_06_0080 +
20736778-20737005,20737104-20737482,20737572-20737615,
20738491-20738612,20738701-20738809,20738933-20739046
Length = 331
Score = 29.5 bits (63), Expect = 5.6
Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 4/86 (4%)
Query: 201 GARFTENSMVCAVENDEYKNNTVQDFCLGNSGGPLICHNEVVGVQTYAELNCNPPYLYQL 260
G R + + ++ + YK VQD GN+ +IC E ++ L C Y +
Sbjct: 229 GHRGLSAATLASLPSVTYKAEGVQD---GNTEQCVICRVEFEDGESLIALPCKHSYHPEC 285
Query: 261 LNQWENFISCGTDDKCHEKECSKHCV 286
+NQW D C +K CV
Sbjct: 286 INQWLQINKRALFD-CQAAYVAKFCV 310
>01_05_0503 - 22779025-22779397,22779602-22779627
Length = 132
Score = 29.5 bits (63), Expect = 5.6
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 368 TSNQKDEIRADSTENLRNSRKR---LEHVEEEAKRKVNVEAQKEDKDHKETKIVKLSSAA 424
T+N KD IR + ENL N + + EE R ++V A D +E ++++ + A
Sbjct: 63 TANSKDGIRMAAMENLSNLKPEPAASKQFEERRHRSIDVGALNYDPREQEERLMERNYTA 122
>09_04_0122 + 14841742-14841822,14841965-14842171
Length = 95
Score = 29.1 bits (62), Expect = 7.4
Identities = 15/69 (21%), Positives = 32/69 (46%)
Query: 358 PTSEARATTKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETKI 417
P ++ T + ++DE+ + E L RKR + + +++ +EA D +E
Sbjct: 4 PVNQDSITPVNTWEEDELELEEEEGLLCKRKRAKFSDSTVRQQQGIEAAAMDMVMEEAAA 63
Query: 418 VKLSSAADR 426
+ L +A +
Sbjct: 64 LSLGVSASK 72
>03_02_0322 +
7448046-7448135,7448402-7448515,7449119-7449437,
7449519-7450453
Length = 485
Score = 29.1 bits (62), Expect = 7.4
Identities = 16/54 (29%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 371 QKDEIRADSTENLRNSRKRLEH--VEEEAKRKVNVEAQKEDKDHKETKIVKLSS 422
QK+ +A+ + R+ RK L H + + +KR + + + ED ++ + K K+SS
Sbjct: 70 QKEREKAEKKKEKRSDRKALPHGEISKHSKRTHHKKRKHEDINNADQKSRKVSS 123
>01_06_0381 +
28878811-28879120,28880189-28880331,28880753-28881532,
28882568-28883968
Length = 877
Score = 29.1 bits (62), Expect = 7.4
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 359 TSEARATTKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETKIV 418
T E+++ +S KD + ++ R+S ++ + ++RK + + E K K +
Sbjct: 409 TQESKSRGGSSEPKDRKSSSEHKDRRSSSEQKDR-RSPSERKGSNHGKGESKSKKRSSTS 467
Query: 419 KLSSAADRNSA 429
K +S+ DR+SA
Sbjct: 468 KDASSPDRSSA 478
>12_02_0616 -
21246374-21246462,21246605-21247702,21247800-21248110,
21248550-21249251,21252802-21252912,21253396-21253481,
21253753-21253862,21254085-21254236,21254656-21254765
Length = 922
Score = 28.7 bits (61), Expect = 9.8
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 270 CGTDDKCHEKECSKHCVSFHKDVKTEQNKPTLTARIDYPKSTEKTFENI 318
C +D H+K+ + H VS D+ E + P L A + P + + ENI
Sbjct: 691 CQSDSALHDKDQAAHVVSHELDL-NESSVPDLNAEVVMPTESFRN-ENI 737
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.132 0.393
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,298,398
Number of Sequences: 37544
Number of extensions: 430385
Number of successful extensions: 1198
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1194
Number of HSP's gapped (non-prelim): 11
length of query: 443
length of database: 14,793,348
effective HSP length: 84
effective length of query: 359
effective length of database: 11,639,652
effective search space: 4178635068
effective search space used: 4178635068
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)
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