SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000993-TA|BGIBMGA000993-PA|IPR009003|Peptidase,
trypsin-like serine and cysteine
         (443 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing ...    35   0.094
At3g28770.1 68416.m03591 expressed protein                             34   0.16 
At2g25220.1 68415.m03018 protein kinase family protein  contains...    34   0.16 
At5g40340.1 68418.m04894 PWWP domain-containing protein KED, Nic...    33   0.29 
At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein ...    33   0.29 
At4g08710.1 68417.m01439 hypothetical protein contains Pfam prof...    32   0.88 
At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing ...    31   1.2  
At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing ...    31   1.2  
At5g15920.1 68418.m01862 structural maintenance of chromosomes (...    31   1.5  
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01...    31   1.5  
At5g38720.1 68418.m04683 expressed protein predicted protein, Dr...    31   2.0  
At3g53040.1 68416.m05846 late embryogenesis abundant protein, pu...    31   2.0  
At3g15120.1 68416.m01913 AAA-type ATPase family protein contains...    31   2.0  
At3g10180.1 68416.m01219 kinesin motor protein-related similar t...    31   2.0  
At3g02400.1 68416.m00227 forkhead-associated domain-containing p...    31   2.0  
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai...    30   2.7  
At5g60530.1 68418.m07590 late embryogenesis abundant protein-rel...    30   2.7  
At1g11420.1 68414.m01312 agenet domain-containing protein contai...    30   2.7  
At2g22140.1 68415.m02630 expressed protein ; expression supporte...    30   3.6  
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu...    30   3.6  
At5g19480.1 68418.m02321 expressed protein                             29   4.7  
At1g67230.1 68414.m07652 expressed protein                             29   4.7  
At5g57480.1 68418.m07183 AAA-type ATPase family protein contains...    29   6.2  
At5g53800.1 68418.m06685 expressed protein                             29   6.2  
At3g26932.1 68416.m03370 double-stranded RNA-binding domain (DsR...    29   6.2  
At3g06020.1 68416.m00687 expressed protein ; expression supporte...    29   6.2  
At3g05900.1 68416.m00664 neurofilament protein-related similar t...    29   6.2  
At2g41960.1 68415.m05191 expressed protein                             29   6.2  
At1g29990.1 68414.m03668 prefoldin, putative similar to Swiss-Pr...    29   6.2  
At5g58590.1 68418.m07342 Ran-binding protein 1, putative / RanBP...    29   8.2  
At5g27120.1 68418.m03237 SAR DNA-binding protein, putative stron...    29   8.2  
At4g33500.1 68417.m04758 protein phosphatase 2C-related / PP2C-r...    29   8.2  
At4g07493.1 68417.m01156 hypothetical protein                          29   8.2  
At3g28580.1 68416.m03568 AAA-type ATPase family protein contains...    29   8.2  
At2g22560.1 68415.m02674 kinase interacting protein-related simi...    29   8.2  

>At3g52660.1 68416.m05801 RNA recognition motif (RRM)-containing
           protein heterogeneous nuclear ribonucleoprotein R, Homo
           sapiens, PIR:T02673; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 471

 Score = 35.1 bits (77), Expect = 0.094
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 360 SEARATTKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETK 416
           SE R      N  +EI  +  E      + +E +EEE + +V VE ++E++D   T+
Sbjct: 17  SEERVDLDGDNDPEEILEEEVEYEEVEEEEIEEIEEEIEEEVEVEEEEEEEDAVATE 73


>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 34.3 bits (75), Expect = 0.16
 Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 366  TKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETKIVKLSSAAD 425
            +K SN K +   D  E + N  K+ E  ++E  +  N + ++E+KD+KE K  + S++ +
Sbjct: 951  SKNSNMKKK-EEDKKEYVNNELKKQEDNKKETTKSENSKLKEENKDNKEKKESEDSASKN 1009

Query: 426  R 426
            R
Sbjct: 1010 R 1010



 Score = 33.5 bits (73), Expect = 0.29
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 6/69 (8%)

Query: 361 EARATTKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETKIVKL 420
           E++   KT   ++ +R +  EN++ ++K  E VE+  K++       E KD+K     KL
Sbjct: 754 ESKENKKTKTNENRVR-NKEENVQGNKKESEKVEKGEKKESKDAKSVETKDNK-----KL 807

Query: 421 SSAADRNSA 429
           SS  +R+ A
Sbjct: 808 SSTENRDEA 816



 Score = 31.9 bits (69), Expect = 0.88
 Identities = 14/47 (29%), Positives = 27/47 (57%)

Query: 370  NQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETK 416
            + KD+ +    E   +  K+L+  EE+ K++ +VE  K+ K+ K+ K
Sbjct: 1185 SSKDQQKKKEKEMKESEEKKLKKNEEDRKKQTSVEENKKQKETKKEK 1231



 Score = 28.7 bits (61), Expect = 8.2
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 3/68 (4%)

Query: 361 EARATTKTSN-QKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETKIVK 419
           E + T  TS+ QK + +    +  +NS  + +  EE+ K  VN E +K++ + KET   +
Sbjct: 928 ENKDTINTSSKQKGKDKKKKKKESKNSNMKKK--EEDKKEYVNNELKKQEDNKKETTKSE 985

Query: 420 LSSAADRN 427
            S   + N
Sbjct: 986 NSKLKEEN 993



 Score = 28.7 bits (61), Expect = 8.2
 Identities = 20/72 (27%), Positives = 42/72 (58%), Gaps = 7/72 (9%)

Query: 361  EARATTKTSNQKD-EIRADSTENLR----NSRKRLEHVEEEAKRKVNVEAQKEDKDHKET 415
            E+++  K  ++KD E   D   N +    N +K+ +HV+   K++ + + +KE+++  ET
Sbjct: 1107 ESKSRKKEEDKKDMEKLEDQNSNKKKEDKNEKKKSQHVKL-VKKESDKKEKKENEEKSET 1165

Query: 416  KIVKLSSAADRN 427
            K ++ SS + +N
Sbjct: 1166 KEIE-SSKSQKN 1176


>At2g25220.1 68415.m03018 protein kinase family protein  contains
           protein kinase domain, Pfam:PF00069
          Length = 383

 Score = 34.3 bits (75), Expect = 0.16
 Identities = 18/52 (34%), Positives = 29/52 (55%)

Query: 382 NLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETKIVKLSSAADRNSAIHCY 433
           N++ + K++E+V +EAKR+   E     K H    I  L SA++ NS+   Y
Sbjct: 119 NVKAAVKKIENVSQEAKREFQNEVDLLSKIHHSNVISLLGSASEINSSFIVY 170


>At5g40340.1 68418.m04894 PWWP domain-containing protein KED,
           Nicotiana tabacum, EMBL:AB009883
          Length = 1008

 Score = 33.5 bits (73), Expect = 0.29
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 360 SEARATTKTSNQKDEIRADSTENLRN---SRKRLEHVEEEAKRKVNVEAQKEDKDHKETK 416
           S+ ++  +   QK+   +   E  R    S+K+ E VEEE  RK +VE+ K+++  K+ K
Sbjct: 768 SKKQSDGEEETQKEPSESTKKERKRKNPESKKKAEAVEEEETRKESVESTKKERKRKKPK 827


>At3g57150.1 68416.m06363 dyskerin, putative / nucleolar protein
           NAP57, putative similar to SP|P40615 Dyskerin (Nucleolar
           protein NAP57) {Rattus norvegicus}; contains Pfam
           profiles PF01509: TruB family pseudouridylate synthase
           (N terminal domain), PF01472: PUA domain; supporting
           cDNA gi|8901185|gb|AF234984.2|AF234984
          Length = 565

 Score = 33.5 bits (73), Expect = 0.29
 Identities = 20/69 (28%), Positives = 34/69 (49%)

Query: 360 SEARATTKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETKIVK 419
           S A  TTK S  K+    ++ E +++S+K+ +  +EE K +     +KE K  K+ K   
Sbjct: 450 SPAPVTTKKSKTKEVEGEEAEEKVKSSKKKKKKDKEEEKEEEAGSEKKEKKKKKDKKEEV 509

Query: 420 LSSAADRNS 428
           +   A   S
Sbjct: 510 IEEVASPKS 518


>At4g08710.1 68417.m01439 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 715

 Score = 31.9 bits (69), Expect = 0.88
 Identities = 24/111 (21%), Positives = 34/111 (30%), Gaps = 4/111 (3%)

Query: 308 PKSTEKTFENITATSALPETVTEEGEIXXXXXXXXXXXXXXXXXXXXXXLPTSEARATTK 367
           P    K     T  S   ET T   E                        PT E    TK
Sbjct: 3   PLKKRKRGVGTTVKSTTEETATATKETAPATKETAPATKETAPTITKETAPTKETAPATK 62

Query: 368 ----TSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKE 414
               T  ++  +     EN+       E  EEE K +   E  +E+++ +E
Sbjct: 63  ETAPTRTEEPSLTEQDPENVEEEESEEEEKEEEEKEEEEEEEGEEEEEEEE 113


>At3g27700.2 68416.m03459 RNA recognition motif (RRM)-containing
           protein contains Pfam profile: PF00076 RNA recognition
           motif
          Length = 908

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 6/78 (7%)

Query: 359 TSEARATTKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKV-NVEAQ-----KEDKDH 412
           T+     T    +K +      E LR  ++ LE    E ++K+  +E Q     +E+ D 
Sbjct: 578 TTSGPKVTPLQQKKADTLERLKETLRKKQEMLEQKRNEYRKKLATLEKQGTVVKREEADE 637

Query: 413 KETKIVKLSSAADRNSAI 430
            + K VKL +A+D  +AI
Sbjct: 638 PDAKRVKLDTASDSGAAI 655


>At3g27700.1 68416.m03458 RNA recognition motif (RRM)-containing
           protein contains Pfam profile: PF00076 RNA recognition
           motif
          Length = 908

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 6/78 (7%)

Query: 359 TSEARATTKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKV-NVEAQ-----KEDKDH 412
           T+     T    +K +      E LR  ++ LE    E ++K+  +E Q     +E+ D 
Sbjct: 578 TTSGPKVTPLQQKKADTLERLKETLRKKQEMLEQKRNEYRKKLATLEKQGTVVKREEADE 637

Query: 413 KETKIVKLSSAADRNSAI 430
            + K VKL +A+D  +AI
Sbjct: 638 PDAKRVKLDTASDSGAAI 655


>At5g15920.1 68418.m01862 structural maintenance of chromosomes
           (SMC) family protein (MSS2) similar to SMC-related
           protein MSS2 [Arabidopsis thaliana] GI:9965743; contains
           Pfam profiles PF02483: SMC family C-terminal domain,
           PF02463: RecF/RecN/SMC N terminal domain
          Length = 1053

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 378 DSTENLRNSRKRLEHVEEEAKR-KVNVEAQKEDKDHKETKIVKLSSAADRNSAIHCYL 434
           D+ + ++ + K+L+   +     K  +E QK++K   ++K  K+ +  D N    C+L
Sbjct: 255 DAKKRMKEAEKKLDEAAKNLNSMKEPIEKQKKEKAETDSKCKKVKNLMDANGRNRCHL 312


>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01612:
            reticulocyte binding protein; contains TIGRFAM TIGR00864:
            polycystin cation channel protein; similar to
            fimbriae-associated protein Fap1 [Streptococcus
            parasanguinis] (GI:3929312)
          Length = 1498

 Score = 31.1 bits (67), Expect = 1.5
 Identities = 14/56 (25%), Positives = 31/56 (55%)

Query: 361  EARATTKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETK 416
            E R   + +  K++ R +     + + +R +  EE+AK +  ++AQKE ++ ++ K
Sbjct: 1224 EKRKQKEAAKMKEQHRLEEIAKAKEAMERKKKREEKAKARAVLKAQKEAEEREKVK 1279


>At5g38720.1 68418.m04683 expressed protein predicted protein,
           Drosophila melanogaster
          Length = 306

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 366 TKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETKIVKLSS 422
           TK   + +EI   S E+L+   K     +   K+K+++ ++KE+K  +E  + ++SS
Sbjct: 111 TKKKRKAEEITRSSVEDLKRESK---FKKSNKKKKMDMTSKKENKIEEEEDVYQISS 164


>At3g53040.1 68416.m05846 late embryogenesis abundant protein,
           putative / LEA protein, putative similar to LEA protein
           in group 3 [Arabidopsis thaliana] GI:1526424; contains
           Pfam profile PF02987: Late embryogenesis abundant
           protein
          Length = 479

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 363 RATTKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRK---VNVEAQKEDKDHKETKIVK 419
           RA    S + +E +  + E    ++++++   EEA+RK   + +E +K D+D        
Sbjct: 305 RAMGFLSGKTEETKQKAVETKDTAKEKMDEAGEEARRKMEEMRLEGKKLDEDASRKTQQS 364

Query: 420 LSSAADR 426
             SAAD+
Sbjct: 365 TESAADK 371


>At3g15120.1 68416.m01913 AAA-type ATPase family protein contains
           PROSITE domains, PS00674: AAA-protein family signature
           and PS00017: ATP/GTP-binding site motif A (P-loop)
          Length = 1954

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 19/61 (31%), Positives = 39/61 (63%), Gaps = 3/61 (4%)

Query: 359 TSEARATTKTSNQKDEIRADSTENLR-NSRKRLEHVEEEA-KRKVNVEAQKE-DKDHKET 415
           + + +  + TSN +DE  ++S E+++ +S  R ++ E++A KR V +E++ E + D  ET
Sbjct: 191 SEDVQKESDTSNSEDESASESEESMQADSAAREKYQEKKATKRSVFLESENEAEVDRTET 250

Query: 416 K 416
           +
Sbjct: 251 E 251


>At3g10180.1 68416.m01219 kinesin motor protein-related similar to
           centromere protein E GB:4502781 [Homo sapiens]
          Length = 1348

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 378 DSTENLRNSRKRLEHVEEE-AKRKVNVEAQKEDKDHKETKIVKL 420
           D TE L +S  +LEH++ +  + K  +E    D+   ET + +L
Sbjct: 947 DLTEKLEHSNTKLEHLQNDVTELKTRLEVSSSDQQQLETNVKQL 990


>At3g02400.1 68416.m00227 forkhead-associated domain-containing
           protein / FHA domain-containing protein / AT hook
           motif-containing protein contains Pfam profiles PF00498:
           FHA domain, PF02178: AT hook motif
          Length = 585

 Score = 30.7 bits (66), Expect = 2.0
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 361 EARATTKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQK-EDKDHKETK 416
           E  A    S + D+I     E   +  KR+E VE E ++K  VE  K  DK+  ET+
Sbjct: 364 ENEAQEGCSGRSDDICDQEDEKECDGSKRVEQVEIELRKKSTVEGLKCTDKEDGETE 420


>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
           Pfam profiles  PF00270:DEAD/DEAH box helicase and
           PF00271:  Helicase conserved C-terminal domain;
           identical to cDNA RH27 helicase, partial GI:4033334
          Length = 633

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 14/51 (27%), Positives = 33/51 (64%), Gaps = 1/51 (1%)

Query: 368 TSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETKIV 418
           T++++DE+ A+  E  +  +K+ +  E +++ +  VE ++E+K  +ET I+
Sbjct: 102 TNDEEDEVIAEEEEPKKKKKKQRKDTEAKSEEE-EVEDKEEEKKLEETSIM 151


>At5g60530.1 68418.m07590 late embryogenesis abundant
           protein-related / LEA protein-related similar to late
           embryogenesis abundant protein [Picea glauca] GI:1350543
          Length = 439

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 361 EARATTKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDH--KETKIV 418
           +A    K   +KD+   +  +  R  +++ + +E+E K K   E ++++K+   KE K  
Sbjct: 70  KAAKDKKEKEKKDKEEKEKKDKERKEKEKKDKLEKEKKDKERKEKERKEKERKAKEKKDK 129

Query: 419 KLSSAADR 426
           + S AA R
Sbjct: 130 EESEAAAR 137


>At1g11420.1 68414.m01312 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 604

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 20/60 (33%), Positives = 27/60 (45%)

Query: 365 TTKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETKIVKLSSAA 424
           T + S  K E      + L    K +E   +EA  K   EA+KE KD    KI ++ S A
Sbjct: 523 TNEFSKAKQEFDDMEQKILEVKHKIIELQRQEAALKEQKEAEKEQKDAAWKKICQMESCA 582


>At2g22140.1 68415.m02630 expressed protein ; expression supported
           by MPSS
          Length = 506

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 17/74 (22%), Positives = 34/74 (45%)

Query: 357 LPTSEARATTKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETK 416
           LP        K  +++D+  A   + LR  ++RLE    +A+       +KE K  ++ K
Sbjct: 174 LPVPGEALPKKRQSKEDKTSAMEEKKLRKEQERLEKAASKAEEAERKRLEKEKKKWEKGK 233

Query: 417 IVKLSSAADRNSAI 430
           +   S  A+ ++ +
Sbjct: 234 LALKSIVAEIDTKV 247


>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
           putative
          Length = 506

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 13/56 (23%), Positives = 31/56 (55%)

Query: 361 EARATTKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETK 416
           +AR   +   ++ E  +   E+ R  R+R E  ++E++R+ + +  +  +D+KE +
Sbjct: 433 DARELERKHRERKERESREDEDRRRRRRREESRDKESRRERDEDDHRSHRDYKERR 488


>At5g19480.1 68418.m02321 expressed protein
          Length = 207

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 357 LPTSEARATTKTSNQKDEIRADSTENLRNSRKR---LEHVEEEAKRKVNVEAQKEDKDHK 413
           LP +E  A T  S  K E +    ++ ++  K+    EH + + K K  ++ + +DKD  
Sbjct: 105 LPPAEKGAPTTVSKSKSESKDKDRKHRKHKDKKEKDREHKKHKHKHKDRIKDKDKDKDRD 164

Query: 414 ETK 416
           + K
Sbjct: 165 KKK 167


>At1g67230.1 68414.m07652 expressed protein
          Length = 1132

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 7/77 (9%)

Query: 361 EARATTKTSNQKDEIRA--DSTEN---LRNSRKRLEHVEEEAKRKV-NVEAQKEDKDHKE 414
           EAR         DE +A  DST+    L   +KR + +++  K KV  VE ++ +  H E
Sbjct: 331 EAREKMAVQQLVDEHQAKLDSTQREFELEMEQKR-KSIDDSLKSKVAEVEKREAEWKHME 389

Query: 415 TKIVKLSSAADRNSAIH 431
            K+ K   A DR    H
Sbjct: 390 EKVAKREQALDRKLEKH 406



 Score = 29.1 bits (62), Expect = 6.2
 Identities = 12/39 (30%), Positives = 23/39 (58%)

Query: 381 ENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETKIVK 419
           E+LR   ++L+  EE   +   +  Q+ED+ ++  KI+K
Sbjct: 230 EDLREWERKLQEGEERVAKSQMIVKQREDRANESDKIIK 268


>At5g57480.1 68418.m07183 AAA-type ATPase family protein contains
           Pfam profile: PF00004 ATPase family
          Length = 520

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 2/28 (7%)

Query: 390 LEHVEEEAKRKVNVEAQKEDKDHKETKI 417
           LE VEE+ KR   +++Q ED+DH E +I
Sbjct: 483 LEVVEEQEKRA--IDSQNEDEDHDEEEI 508


>At5g53800.1 68418.m06685 expressed protein
          Length = 351

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query: 359 TSEARATTKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETK 416
           +S++ + +++     E      E  R  RKR E  EEE +RK     + + K +K  K
Sbjct: 107 SSDSESESESEYSDSEESESEDERRRRKRKRKEREEEEKERKRRRREKDKKKRNKSDK 164


>At3g26932.1 68416.m03370 double-stranded RNA-binding domain
           (DsRBD)-containing protein contains Pfam profile
           PF00035: Double-stranded RNA binding motif
          Length = 301

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 357 LPTSEARATTKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETK 416
           L T+EA +++    +    R + T+     +  LE  +E A++K +++  K +   K + 
Sbjct: 167 LYTNEASSSSPPPQRFWPSRTNLTQEQSKVKSLLEKCQEYAEKKQSLDDPKPEMRIKTSS 226

Query: 417 IVKLSSAADRNSAIHCYLFGLMFWHFI 443
              LSS+ +RN    CY   L F  F+
Sbjct: 227 PSPLSSSVERN----CYSKLLPFPSFV 249


>At3g06020.1 68416.m00687 expressed protein ; expression supported
           by MPSS
          Length = 300

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 12/61 (19%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 360 SEARATTKTSNQKDEIRADSTENLRNSRKRL-EHVEEEAKRKVNVEAQKEDKDHKETKIV 418
           S+    T+T  +K+E   ++ E +R++ + + E+ EEE +++  ++ +  +K  +  + +
Sbjct: 221 SDDHIETETKEEKEEEEEETIETVRDNEEEIPEYKEEEEEKEEEIKVKGVEKVQRSRRCI 280

Query: 419 K 419
           +
Sbjct: 281 E 281


>At3g05900.1 68416.m00664 neurofilament protein-related similar to
           NF-180 (GI:632549) [Petromyzon marinus] similar to
           Neurofilament triplet H protein (200 kDa neurofilament
           protein) (Neurofilament heavy polypeptide) (NF-H)
           (Swiss-Prot:P12036) [Homo sapiens]
          Length = 673

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 2/32 (6%)

Query: 395 EEAKRKVNVEA--QKEDKDHKETKIVKLSSAA 424
           E+A+ K  VE+  ++E KD +ETKIV +S +A
Sbjct: 177 EKAEEKPTVESVVEEETKDREETKIVDVSESA 208


>At2g41960.1 68415.m05191 expressed protein 
          Length = 1215

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 12/45 (26%), Positives = 26/45 (57%)

Query: 372 KDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETK 416
           ++E +    E  R  RKR++  E++ +RK  ++ ++ +K+ K  K
Sbjct: 502 EEEEKEKREEEERKERKRIKEREKKLRRKERLKEKEREKEQKNPK 546


>At1g29990.1 68414.m03668 prefoldin, putative similar to
           Swiss-Prot:O15212 prefoldin subunit 6 (Protein Ke2)
           [Homo sapiens]
          Length = 129

 Score = 29.1 bits (62), Expect = 6.2
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 375 IRADSTENLRNSRKRLEHVEEEAKR-KVNVEAQKEDKDHKETKIVKL 420
           ++ D  E   N RKR+E++  E KR    ++  +E +++K   I+KL
Sbjct: 69  VKQDLAEANANVRKRIEYISAELKRLDAILQDMEEKQNNKRETIMKL 115


>At5g58590.1 68418.m07342 Ran-binding protein 1, putative / RanBP1,
           putative strong similarity to Ran binding proteins from
           Arabidopsis thaliana atranbp1a [Arabidopsis thaliana]
           GI:2058282, atranbp1b [Arabidopsis thaliana] GI:2058284;
           contains Pfam profile PF00638: RanBP1 domain
          Length = 219

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 360 SEARATTKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETKI 417
           +E++   K S Q DE  A   ENL       E   +EA+ K   E  KEDK+ K+ K+
Sbjct: 156 AESQQVGKESTQGDEA-AGLIENLSVEENISEEKAKEAEEK---EPAKEDKETKKEKV 209


>At5g27120.1 68418.m03237 SAR DNA-binding protein, putative strong
           similarity to SAR DNA-binding protein-1 [Pisum sativum]
           GI:3132696; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 533

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 360 SEARATTKTSNQKDEIRADSTEN--LRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETKI 417
           +E  +  K++ +K E   ++ E    +  +K+ +H EEE +     + + E K  K+T++
Sbjct: 474 TEEPSKKKSNKKKTEAEPETAEEPAKKEKKKKRKHEEEETEMPAKKKEKSEKKKKKKTEV 533


>At4g33500.1 68417.m04758 protein phosphatase 2C-related /
           PP2C-related YHR077c (NMD2,IFS1) protein -Saccharomyces
           cerevisiae,PID:g555939
          Length = 724

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 367 KTSNQKDEIRADST-ENLRN--SRKRLEHVEEEAKRKVNVEAQKEDKDHKETKIVKLSSA 423
           +TS +K+E  A S   N+     RKR+    ++ K  VNV   ++  D K   +  LSS 
Sbjct: 136 ETSTEKEETAAPSDLSNVIKIKDRKRVRSPTKKKKETVNVSRSEDKIDAKSASVSNLSSI 195

Query: 424 ADRNSAI 430
                AI
Sbjct: 196 VSVAEAI 202


>At4g07493.1 68417.m01156 hypothetical protein
          Length = 158

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 17/73 (23%), Positives = 36/73 (49%), Gaps = 1/73 (1%)

Query: 358 PTSEARATTKTSNQK-DEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETK 416
           P    R+ +K+S +K    +AD T   +   +RLE V+E++K ++    + +  +     
Sbjct: 73  PVGNTRSRSKSSARKFSRNKADITRGKKPVGRRLELVDEDSKEEMASPKEADQTERGGDD 132

Query: 417 IVKLSSAADRNSA 429
            ++   +A RN +
Sbjct: 133 DLESEKSATRNES 145


>At3g28580.1 68416.m03568 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 500

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 14/48 (29%), Positives = 29/48 (60%), Gaps = 2/48 (4%)

Query: 383 LRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETKIVKLSSAADRNSAI 430
           L+   + L+  +EEAK+KV  E ++E+K  K+ K+ ++ +  ++   I
Sbjct: 451 LKRLIEALKEEKEEAKKKV--EEEEEEKQRKKEKVKEIEAEKEKKKKI 496


>At2g22560.1 68415.m02674 kinase interacting protein-related similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]; weak similarity to Myosin II heavy chain,
           non muscle (Swiss-Prot:P08799) [Dictyostelium discoideum
          Length = 891

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 18/70 (25%), Positives = 27/70 (38%)

Query: 361 EARATTKTSNQKDEIRADSTENLRNSRKRLEHVEEEAKRKVNVEAQKEDKDHKETKIVKL 420
           E R T +  ++  E+     E      K  EH E  A   +N     E  D    K++ L
Sbjct: 252 EVRRTAELDHEIKEMSRKKKELESVKEKIREHFESGANSSLNGTDMAEKVDELVNKVISL 311

Query: 421 SSAADRNSAI 430
            SA    +A+
Sbjct: 312 ESAVSSQTAL 321


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.132    0.393 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,727,211
Number of Sequences: 28952
Number of extensions: 391835
Number of successful extensions: 1657
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 1583
Number of HSP's gapped (non-prelim): 84
length of query: 443
length of database: 12,070,560
effective HSP length: 83
effective length of query: 360
effective length of database: 9,667,544
effective search space: 3480315840
effective search space used: 3480315840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 61 (28.7 bits)

- SilkBase 1999-2023 -