Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000992-TA|BGIBMGA000992-PA|undefined
         (429 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    27   0.30 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    26   0.53 
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    25   1.6  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   3.7  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    23   3.7  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   8.7  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    22   8.7  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   8.7  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   8.7  

>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 27.1 bits (57), Expect = 0.30
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 218 NHNKYRNDHNSYDNGKLRDY 237
           N+N Y N++N+Y+N    +Y
Sbjct: 330 NNNNYNNNYNNYNNNNYNNY 349


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 26.2 bits (55), Expect = 0.53
 Identities = 19/124 (15%), Positives = 51/124 (41%), Gaps = 4/124 (3%)

Query: 40  HNEGAESIKHDKQK--GEKVHQLESQINDSHKNHYSKANDETKYLKKEHDTKSATDSDAY 97
           HN+ A +   D Q    +  +   +   +++K + ++ ND  +   K++  +   + +  
Sbjct: 423 HNQNAGNQNADNQNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQ--NDNKQ 480

Query: 98  KGHNSSQDKAEDSHATGYKRXXXXXXXXXXFQNSYHKDESSNKSTFFDDLNDEGDQAAYN 157
            G+  + +K   +   G K+            N  + +  ++     +D N   +Q  ++
Sbjct: 481 NGNRQNDNKQNGNRQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQNNQNDNNRNDNQVHHS 540

Query: 158 SRLN 161
           S+L+
Sbjct: 541 SKLH 544


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 24.6 bits (51), Expect = 1.6
 Identities = 7/14 (50%), Positives = 12/14 (85%)

Query: 218 NHNKYRNDHNSYDN 231
           N+N Y N++N+Y+N
Sbjct: 326 NYNNYNNNYNNYNN 339



 Score = 23.8 bits (49), Expect = 2.8
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 218 NHNKYRNDHNSYDNGKLRDYH 238
           N+N Y N +N+Y+N   + Y+
Sbjct: 333 NYNNYNNYNNNYNNNYKKLYY 353


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 157 NSRLNSHDNQGGRSYQGSHNNGQ 179
           NSR  + DNQ    Y  +HN  +
Sbjct: 411 NSRCANFDNQDNNHYNHNHNQAR 433


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 208 GKKYILDDALNHNKYRNDHNSYDNGKLRDYHEY---RVPEVHHHHHDPGYN--SQRWENE 262
           G K ILD   NH+ + +        +++ Y EY   R   + +    P  N  S  W + 
Sbjct: 113 GLKVILDFVPNHSSHEHPWFKKSVQRIKPYDEYYVWRDARIVNGTRQPPNNWLSVFWGSA 172

Query: 263 RGWDEE 268
             W+EE
Sbjct: 173 WQWNEE 178


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 10/38 (26%), Positives = 17/38 (44%)

Query: 205 HDYGKKYILDDALNHNKYRNDHNSYDNGKLRDYHEYRV 242
           H+ G K ILD   NH   +++        +  Y+ Y +
Sbjct: 110 HEKGLKIILDFVPNHTSDQHEWFQLSLKNIEPYNNYYI 147


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 8/26 (30%), Positives = 16/26 (61%)

Query: 213 LDDALNHNKYRNDHNSYDNGKLRDYH 238
           L +  N++ Y N +N+Y+N   + Y+
Sbjct: 85  LSNNYNYSNYNNYNNNYNNYNKKLYY 110


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 218 NHNKYRNDHNSYDNGKLRDYH 238
           N+N Y  ++N+Y+N K   Y+
Sbjct: 100 NYNNYNYNNNNYNNYKKLYYN 120


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 8.7
 Identities = 10/38 (26%), Positives = 17/38 (44%)

Query: 205 HDYGKKYILDDALNHNKYRNDHNSYDNGKLRDYHEYRV 242
           H+ G K ILD   NH   +++        +  Y+ Y +
Sbjct: 110 HEKGLKIILDFVPNHTSDQHEWFQLSLKNIEPYNNYYI 147


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.311    0.130    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,583
Number of Sequences: 429
Number of extensions: 5759
Number of successful extensions: 21
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 11
length of query: 429
length of database: 140,377
effective HSP length: 60
effective length of query: 369
effective length of database: 114,637
effective search space: 42301053
effective search space used: 42301053
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 45 (22.2 bits)