Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000991-TA|BGIBMGA000991-PA|IPR004154|Anticodon-binding,
IPR009068|S15/NS1, RNA-binding, IPR010987|Glutathione S-transferase,
C-terminal-like, IPR000738|WHEP-TRS
(491 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch... 198 1e-51
SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gc... 34 0.052
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb... 31 0.27
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr... 29 1.5
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 29 1.9
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 29 1.9
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 27 4.5
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 27 4.5
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|... 27 4.5
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 27 4.5
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 27 5.9
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 27 5.9
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 27 5.9
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 27 5.9
SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual 27 7.8
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 27 7.8
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom... 27 7.8
SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|... 27 7.8
>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 538
Score = 198 bits (484), Expect = 1e-51
Identities = 141/401 (35%), Positives = 200/401 (49%), Gaps = 29/401 (7%)
Query: 1 MADSQEDLLLKIQEQGDLVRKLKAAKDSNERGKGFKEVYNFEEIDKHLSHYSYICGYVPS 60
MADS D+ +I QG+LVR LK+ S E +IDK ++ +
Sbjct: 1 MADSLVDINERITSQGNLVRSLKSQGASKE------------DIDKEVAKLLQLKNLKLG 48
Query: 61 KPDVDVAKALKSLDFSNYKYIKRWWNHMRSFSDTEVSLFPD-FRQPNFLKYNS-----KK 114
+V K S K K W + + S + F++ + ++ K+
Sbjct: 49 GSEVSGKKKDTSFTLKTPKGTKDWCDKDVVLREHIFSTVTEIFKRHGGVTLDTPVFELKE 108
Query: 115 ILESQVKEEVSKLLALKAQLVTEDAGPQKFTLKTPKGT-RDYNPQQMTIRNNVLDKIITV 173
IL + E+ + LK Q + ++ L P NP+ +I+ + K V
Sbjct: 109 ILSGKYGEDSKLIYDLKDQ--GGELCSLRYDLTVPFARWLAMNPKVTSIKRFHIAK---V 163
Query: 174 FRRHGAECIDTPVFELK--DFDIAGIYDPMVPDAECLKVVTEILEALDIGQYILKVNHRR 231
+RR + E DFDIAG YDPM+PD+E LKV+ E L+AL++G Y +K+NHR+
Sbjct: 164 YRRDQPAMTKGRMREFYQCDFDIAGNYDPMIPDSEALKVLVEALDALEVGNYTIKLNHRK 223
Query: 232 LLDGMFEACGVPADKFRTTCSTVDKLDKSPWEEVRTEMINEKGVSPDAADRIGEYGRLNG 291
+LDG+F CGVP DK RT S VDKLDK PWE+VR EM+ EKG+ + AD+I EY L G
Sbjct: 224 ILDGIFTVCGVPDDKIRTISSAVDKLDKLPWEDVRREMVVEKGLKEEVADKIKEYVLLKG 283
Query: 292 STXXXXXXXXXXXXXXXXAALEGVEAIKTLLQYCELFGIKDKILFDLSLARGLDYYTGVI 351
+A+ ++ L Y E FG+ D+ FD+SLARGLDYYTG+I
Sbjct: 284 DRSLLDKLEADSLLSSNSSAVAAFNDMRLLFDYLEAFGVLDRFSFDMSLARGLDYYTGII 343
Query: 352 YEAVLTRVSIGVERIFSVLEAKLAAGDITVRTSDIDVYVAS 392
YEAV T S +I S E K +A R++D + V S
Sbjct: 344 YEAV-TEAS--APKIKSSAEKKKSADPEADRSNDDSIGVGS 381
Score = 91.9 bits (218), Expect = 2e-19
Identities = 49/128 (38%), Positives = 75/128 (58%), Gaps = 11/128 (8%)
Query: 359 VSIGVERIFSVLEAKLAAGDITVRTSDIDVYVAS-----AQKNFLEERMKICAELWDAGI 413
+S+G+ERIFS+L +K+ DI R +D+DV+V + FL+ERM +C +LW GI
Sbjct: 408 ISLGLERIFSILRSKIPDEDI--RANDVDVFVMAFGGGKEWTGFLKERMSVCKDLWANGI 465
Query: 414 KTEQSYKKNPKMLNQLQHCEENKIPLAVVLGDSELKRGVVKIRNITTREEDE----VPRN 469
K E YK PK Q ++ +P AV+LG E +G V+I+ + +E + VPR
Sbjct: 466 KAEFLYKVKPKPRQQFDAADKFDVPFAVILGQDEFAKGSVRIKQMGLKENSDEGQLVPRE 525
Query: 470 DLVQEIKK 477
++V +KK
Sbjct: 526 EMVSVLKK 533
>SPBC36B7.09 |gcn2|ppk28, ppk28, SPBP18G5.01|eIF2 alpha kinase Gcn2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1576
Score = 33.9 bits (74), Expect = 0.052
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 386 IDVYVASAQKNFLEERMKICAELWDAGIKTEQSYKKNPKMLNQLQHCEENKIPLAVVLGD 445
+DV V S K+ + E+ + ELW I+ + + + + H I +V+
Sbjct: 1331 VDVLVTSIGKDSILEKCSLLQELWALNIQADIVLRGASSLEEIVTHYRSEGINWVLVVRQ 1390
Query: 446 SELK-RGVVKIRNITTREEDEVPRND----LVQEIKKRIDNLNLNQ 486
+ VK RNI E+DE+ ++ L+ EI +R N ++ Q
Sbjct: 1391 KNTQMEHSVKARNILKNEDDEIRFDEVGMWLLGEINERKRNESMLQ 1436
>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 695
Score = 31.5 bits (68), Expect = 0.27
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 8/115 (6%)
Query: 36 KEVYNFEEIDKHLSHYSYICGYVPSKPDVDVAKALKSLDFSNYKYI-KRWWNHMRSFSDT 94
K V+ ++I+ HLS S + PS D+ + KS F +K + ++ N ++S
Sbjct: 187 KRVFE-DQIEIHLSKSSLLGFNAPSPDDIVLMAQSKSKSFQKHKRLDEQLLNSVKSMKKV 245
Query: 95 EVSLFPDFRQPNFLKYNSKKILESQVK-EEVSKLLALKAQLVTEDAGPQKFTLKT 148
L P Q N N+ L SQ + E+SKL+ + +L+ GP K KT
Sbjct: 246 SQQLKP---QKNTNDSNNDHTLLSQDQLIELSKLVKPRTKLLL--LGPPKSGKKT 295
>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1516
Score = 29.1 bits (62), Expect = 1.5
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 364 ERIFSVLEAKLAAGDITVRTSDIDVYVASAQKNFL 398
E IFS+L A L G+I V+ S D Y+ S +N +
Sbjct: 339 ECIFSLLAALLHIGNIEVKHSRNDAYIDSKNENLI 373
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 28.7 bits (61), Expect = 1.9
Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 9/99 (9%)
Query: 16 GDLVRKLKAAKDSNERGKGFKEVYNFEEIDKHLSHYSYICGYVPSKPDVDVAKALKSLDF 75
G L R L A KD KG + +E L Y Y C D+ + ++
Sbjct: 352 GSLSRYLSAKKDK----KGGDSKFFQKEKTFALQRYDYYC----FMQDLHDGSIINDING 403
Query: 76 SNYKYIKRWWNHMRSFSDTEVSLFPDFRQPNFLKYNSKK 114
+Y R ++H+ FS+ S+ P+ +Q N LK K
Sbjct: 404 IFLQYFHRQYDHIALFSNLMNSVLPNLQQLN-LKLEKTK 441
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 28.7 bits (61), Expect = 1.9
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 388 VYVASAQKNFLEERMKICAELWDAGIKTEQSYKKNPKMLNQLQHCEENKIPLAVVLGDSE 447
+ VA+A+K L IC AG + YK ++++ E + + +VLG +
Sbjct: 525 ILVAAAEKELLRAAHVICCTCVGAGDRRISKYKFRSVLIDEATQASEPECMIPLVLGAKQ 584
Query: 448 L 448
+
Sbjct: 585 V 585
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 27.5 bits (58), Expect = 4.5
Identities = 15/67 (22%), Positives = 31/67 (46%)
Query: 74 DFSNYKYIKRWWNHMRSFSDTEVSLFPDFRQPNFLKYNSKKILESQVKEEVSKLLALKAQ 133
+F++ K + H S+ T++SL P Y+S + +S K + K ++ +
Sbjct: 805 EFNDEKDTQPLPEHTTSYPSTQISLAPSIHVEGLETYSSSERKDSSNKYKSRKRNPIRQK 864
Query: 134 LVTEDAG 140
+ +D G
Sbjct: 865 VTEDDKG 871
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta
subunit |Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 27.5 bits (58), Expect = 4.5
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 42 EEIDKHLSHYSYICGYVPSKPDVDVAKAL-KSLDFSNYKYIKRWWNHMRSF 91
++++ L S+I GY PS+ D V KA+ + D + Y RW+ + ++
Sbjct: 13 KQLNDFLLDKSFIEGYEPSQADAVVFKAVGVAPDTAKYPNGARWYKQIATY 63
>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
Prp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 906
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 437 IPLAVVLGDSELKRGVVKIRNITTREEDEVPRNDL--VQEIKKRIDNLNLNQLNGA 490
IPL ++L E K+ V++ R + R + + P+N+ ++ IK + N++Q+ A
Sbjct: 713 IPLWLLLAKLEEKQSVIRARVVFDRAKVKNPKNEFLWLELIKMELRAGNISQVRAA 768
>SPBC11B10.05c |rsp1||random septum position protein
Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 494
Score = 27.5 bits (58), Expect = 4.5
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 96 VSLFPDFRQPNFLKYNSKKILES--QVKEEVSKLLALKAQLVTEDAGPQKFTLKTPKGTR 153
+S P F+ PN+ K+N+K LES + + + L + L + T +P+ +
Sbjct: 195 ISSSPRFKGPNYNKFNAKLYLESLREKRRTYTPLSEISNGLNSNGVENSSITKSSPRSSS 254
Query: 154 DYNPQQ 159
N ++
Sbjct: 255 SSNNER 260
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.1 bits (57), Expect = 5.9
Identities = 29/131 (22%), Positives = 58/131 (44%), Gaps = 11/131 (8%)
Query: 350 VIYEAVLTR-VSIGVERIFSVLEAKLAAGDITVRTSDIDVYVASAQ-KNFLEERMKICAE 407
+++ VL + + + +ER+ + L A + + S + Q K+ L + E
Sbjct: 430 LVFRKVLIKDLVLDIERLKNDLNATRKKNGVYLAESTYKELMDRVQNKDLLCQEQARKLE 489
Query: 408 LWDAGIKTEQSYKKNPKMLNQLQHCEENKIPLAVVLGDSELKRGVVKIRNITTREEDEVP 467
+ D +K+ + + NQ E + L +V +EL+ + + E+E
Sbjct: 490 VLDLNVKSSREQLQYVSKSNQEHKKEVEALQLQLVNSSTELE---------SVKSENEKL 540
Query: 468 RNDLVQEIKKR 478
+N+LV EI+KR
Sbjct: 541 KNELVLEIEKR 551
>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 716
Score = 27.1 bits (57), Expect = 5.9
Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Query: 403 KICAELWDAGIKTEQSYKKNPKMLNQLQHCEENKIPLAVVLGDSELKRGVVKIRNITTRE 462
K+ L A I+TE + + H E +PL + G ++ K+ V T E
Sbjct: 526 KLADRLNAADIRTEADLRAYTPGY-KFSHWEMKGVPLRLEYGPNDAKKNQVTAVRRDTFE 584
Query: 463 EDEVPRNDLVQEIKKRIDNLNLNQLNGA 490
+ VP N+L + + + + N A
Sbjct: 585 KIPVPLNNLEKGVSDLLAKIQTNMYETA 612
>SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1163
Score = 27.1 bits (57), Expect = 5.9
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 425 MLNQLQHCEENKIPLAVVLGDSELKRGV---VKIRNITTREE-DEVPRNDLVQEIKKR 478
+ N QH E N+ L V G +RG+ VK N R++ DE V E+ ++
Sbjct: 1090 LANAQQHAEVNRTYLEAVAGKESFRRGLNNRVKFSNKRVRDDYDEEMEEVEVPEVTRK 1147
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 27.1 bits (57), Expect = 5.9
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 6/43 (13%)
Query: 422 NPKMLNQLQHCEENKIPLAV------VLGDSELKRGVVKIRNI 458
+P +L+ ++H EEN + L+V VL DSE + + + N+
Sbjct: 217 HPLILSTIKHAEENNLDLSVRLLPSKVLSDSEFYKSLSNLVNV 259
>SPCC1753.04 |tol1||3'|Schizosaccharomyces pombe|chr 3|||Manual
Length = 353
Score = 26.6 bits (56), Expect = 7.8
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 387 DVYVASAQKNFLEERMKICAELWDAGIKTEQSYKKNPKMLNQLQHCEE 434
D V +FL E + C+ +W+ +T Q + K L Q++ EE
Sbjct: 68 DPIVGEEDSDFLRENTQTCSRVWELVQETIQ-HATEYKELGQIKSAEE 114
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 26.6 bits (56), Expect = 7.8
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 314 GVEAIKTLLQYCELFGIKDKILFDLSLARGLDYYTGVIYEAVLTRVSIGVERIFSVLEAK 373
G+E L+ EL +++ ILF L+ G D + V+ V R ++G E F V + +
Sbjct: 955 GIEEKAISLKLNELPFLENWILFQCLLSFGGDDFLKVVAYMVYYRRTVG-EMSFRVSDFE 1013
Query: 374 LAAGDITVRTSD 385
LA ++ +D
Sbjct: 1014 LALSRLSTNDAD 1025
>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1158
Score = 26.6 bits (56), Expect = 7.8
Identities = 13/54 (24%), Positives = 26/54 (48%)
Query: 420 KKNPKMLNQLQHCEENKIPLAVVLGDSELKRGVVKIRNITTREEDEVPRNDLVQ 473
K+ K+++ +EN + A ++ D E G + N + D VP ++V+
Sbjct: 460 KQQEKVVDSELEVDENLLEDATMIQDDESHEGESHLENSLSEYVDSVPAEEIVK 513
>SPAC4D7.04c |||cis-prenyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 264
Score = 26.6 bits (56), Expect = 7.8
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 314 GVEAIKTLLQYCELFGIKDKILFDLSL 340
G EA+K+LL+ C G+K+ F S+
Sbjct: 63 GFEALKSLLKVCLKLGVKEVSAFTFSI 89
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.136 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,149,616
Number of Sequences: 5004
Number of extensions: 91638
Number of successful extensions: 277
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 263
Number of HSP's gapped (non-prelim): 24
length of query: 491
length of database: 2,362,478
effective HSP length: 76
effective length of query: 415
effective length of database: 1,982,174
effective search space: 822602210
effective search space used: 822602210
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
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