Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000991-TA|BGIBMGA000991-PA|IPR004154|Anticodon-binding,
IPR009068|S15/NS1, RNA-binding, IPR010987|Glutathione S-transferase,
C-terminal-like, IPR000738|WHEP-TRS
(491 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0366 - 2867953-2868252,2868329-2868469,2868808-2869089,286... 217 2e-56
02_05_0790 - 31768131-31768269,31768343-31768503,31768845-317689... 62 7e-10
04_04_0350 + 24591002-24591123,24592020-24592091,24592343-245924... 50 4e-06
02_04_0121 - 19943988-19944251,19944534-19944734,19944802-199451... 45 2e-04
03_04_0016 + 16461542-16461566,16462701-16462732,16463015-164631... 40 0.003
07_03_1260 - 25260872-25261101,25261199-25261312,25261473-252615... 38 0.024
03_02_0010 + 4903473-4903525,4904117-4904175,4904285-4904355,490... 31 2.8
07_03_1580 + 27888275-27888360,27888755-27888871,27888964-278890... 30 3.6
01_06_0763 + 31800556-31800618,31800659-31800802,31800859-318009... 29 6.4
>05_01_0366 -
2867953-2868252,2868329-2868469,2868808-2869089,
2869177-2869569,2869796-2869975,2870149-2871510
Length = 885
Score = 217 bits (529), Expect = 2e-56
Identities = 126/344 (36%), Positives = 200/344 (58%), Gaps = 35/344 (10%)
Query: 169 KIITVFRRHGAECIDTPVFELKDFDIAGIYDPMVPDAECLKVVTEILEALDIGQYILKVN 228
+I V+RR F DFDIAG+Y+ M PD E +KV+TE+L+ LDIG Y +K+N
Sbjct: 545 QIAKVYRRDNPSKGRYREFYQCDFDIAGVYETMEPDFEVIKVLTELLDQLDIGTYEIKLN 604
Query: 229 HRRLLDGMFEACGVPADKFRTTCSTVDKLDKSPWEEVRTEMINEKGVSPDAADRIGEYGR 288
HR+LLDGM E CGVP +KFRT CS++DKLDK +E+V+ E+++EKG+S + AD+IG+ +
Sbjct: 605 HRKLLDGMLEICGVPPEKFRTVCSSIDKLDKQTFEQVKKELVDEKGISNETADKIGDLVK 664
Query: 289 LNGS--TXXXXXXXXXXXXXXXXAALEGVEAIKTLLQYCELFGIKDKILFDLSLARGLDY 346
G ++ + ++ L + + KI+FDLSLARGLDY
Sbjct: 665 TRGPPLEVLLELRKEGSKFMGNAGSVTALNELEILFKALDKANAIGKIVFDLSLARGLDY 724
Query: 347 YTGVIYEAVL---TRV----------------------SIGV----ERIFSVLEAKLAAG 377
YTGVIYEAV T+V ++GV ER+F+++E +
Sbjct: 725 YTGVIYEAVFKGTTQVGSIAAGGRYDNLVGMFSGKQVPAVGVSLGIERVFAIMEQQEMEK 784
Query: 378 DITVRTSDIDVYVASAQKNFLEERMKICAELWDAGIKTEQSYKKNPKMLNQLQHCEENKI 437
+ +R ++ +V V+ K+ + ++ +ELW+AGIK E +K ++ N L++ ++ I
Sbjct: 785 N-QIRATETEVLVSIIGKDLI-LAAELVSELWNAGIKAE--FKLTTRIQNHLKYATQSGI 840
Query: 438 PLAVVLGDSELKRGVVKIRNITTREEDEVPRNDLVQEIKKRIDN 481
P V++G+SE+ G VK++N+ +E+EV R + Q +K+++ N
Sbjct: 841 PWMVLVGESEISSGKVKLKNLAASQEEEVDRTEFAQVLKQKLRN 884
Score = 56.0 bits (129), Expect = 6e-08
Identities = 24/45 (53%), Positives = 31/45 (68%)
Query: 147 KTPKGTRDYNPQQMTIRNNVLDKIITVFRRHGAECIDTPVFELKD 191
K PKGTRD+ +QM IR + I VF+ HGA +DTPVFEL++
Sbjct: 451 KIPKGTRDFGKEQMAIREHAFSIITGVFKMHGAVSLDTPVFELRE 495
>02_05_0790 -
31768131-31768269,31768343-31768503,31768845-31768973,
31769770-31769912,31770215-31770332,31771070-31771144,
31771528-31771620,31771750-31771879,31772038-31772126,
31772411-31772506,31772610-31772900
Length = 487
Score = 62.5 bits (145), Expect = 7e-10
Identities = 49/167 (29%), Positives = 77/167 (46%), Gaps = 15/167 (8%)
Query: 191 DFDIAGIYDPMV-PDAECLKVVTEILEALDI--GQYILKVNHRRLLDGMFEACGVPADKF 247
+ DI G+ P V ++E L+ + + E L I ++V+ R++L + +P F
Sbjct: 192 NMDIFGM--PKVRAESELLQAIILLFERLGITSSDVGIRVSSRKVLQAVLNMYSIPEHLF 249
Query: 248 RTTCSTVDKLDKSPWEEVRTEMINEKGVSPDAADRIGEYGRLNGSTXXXXXXXXXXXXXX 307
C VDKL K EE+ +++ G+S +A I E L
Sbjct: 250 TEVCVIVDKLGKLTREEIEKKLVTI-GLSSEAVLGIIEVLSLKSLPKLEEVLGSD----- 303
Query: 308 XXAALEGVEAIKTLLQYCELFGIKDKILFDLSLARGLDYYTGVIYEA 354
+E V +K L + E +G D I FD S+ RGL YYTG+++EA
Sbjct: 304 ----VEAVADLKKLFSFAEQYGYADWICFDASVVRGLAYYTGIVFEA 346
Score = 35.1 bits (77), Expect = 0.13
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 140 GPQKFTLKTPKGTRDYNPQQMTIRNNVLDKIITVFRRHGAECIDTPVFE 188
G + P+GTRD+ P+ M +R + D+ V R E +D PV E
Sbjct: 65 GASVVDVNPPRGTRDFPPEDMRLRTWLFDQFREVSRVMAFEEVDFPVLE 113
Score = 34.7 bits (76), Expect = 0.17
Identities = 15/42 (35%), Positives = 27/42 (64%)
Query: 430 QHCEENKIPLAVVLGDSELKRGVVKIRNITTREEDEVPRNDL 471
+H E +++G SE +RG+V+++ ++TREE EV +L
Sbjct: 445 KHAERINAGRLILVGKSEWERGMVRVKILSTREEFEVKAGEL 486
>04_04_0350 + 24591002-24591123,24592020-24592091,24592343-24592448,
24593138-24593242,24593693-24593815,24594163-24594630,
24595226-24595351,24595430-24595516,24595615-24595701,
24595807-24595903,24596519-24596636,24596923-24596995,
24597504-24597566,24597666-24597832,24598444-24598631,
24598909-24599057,24599193-24599442,24599597-24599855,
24599977-24600073,24606696-24606776,24606914-24606970,
24607264-24607395,24607476-24607562,24607941-24608049,
24608134-24608270,24608841-24608945,24609566-24609654,
24609757-24609859,24609960-24610064,24610282-24610293,
24611013-24611078
Length = 1279
Score = 50.0 bits (114), Expect = 4e-06
Identities = 37/174 (21%), Positives = 80/174 (45%), Gaps = 12/174 (6%)
Query: 191 DFDIAGIYDPMVPDAECLKVVTEI-LEALDIGQYILKVNHRRLLDGMFEACGVPADKFRT 249
DFDI G P +P+AE +KV ++ D I+++NH +L + + GVP ++ +
Sbjct: 948 DFDIIGGASP-IPEAEIVKVTLDVGAHFYDPKAIIIRLNHSKLAEAVCSWAGVPQERRQN 1006
Query: 250 TC----STV-----DKLD-KSPWEEVRTEMINEKGVSPDAADRIGEYGRLNGSTXXXXXX 299
ST+ +K D KS W +R +++ + +S + +++ + + +
Sbjct: 1007 VAEFFSSTLVQYWPNKADRKSQWSLIRGQLLQDLRLSEEVVEKLHKADQRFCGSADQVLA 1066
Query: 300 XXXXXXXXXXAALEGVEAIKTLLQYCELFGIKDKILFDLSLARGLDYYTGVIYE 353
+A + ++ I L+ ++ I++ I D+ + YYT + ++
Sbjct: 1067 RLRGTLFYDKSACKALDEISAFLKCLRIWSIEEHITIDVLMPPSECYYTDLFFQ 1120
Score = 30.3 bits (65), Expect = 3.6
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 398 LEERMKICAELWDAGIKTEQSYKK 421
L ERM++ AELW+A IK + S ++
Sbjct: 1203 LNERMELVAELWEANIKEDPSLQE 1226
>02_04_0121 -
19943988-19944251,19944534-19944734,19944802-19945124,
19945283-19945316,19945479-19945856,19946425-19946678,
19946791-19946938,19947052-19947198,19947287-19947664
Length = 708
Score = 44.8 bits (101), Expect = 2e-04
Identities = 34/129 (26%), Positives = 66/129 (51%), Gaps = 6/129 (4%)
Query: 355 VLTRVSIG-VERIFSVLEAKLAAGDITVRTSDIDVYVASAQKNFLEERMKICAELWDAGI 413
++ R +G +ER F VL + AGD + + I + N L+ ++ +EL GI
Sbjct: 579 MIHRAILGSLERFFGVL-IEHYAGDFPLWLAPIQARILPVTDNELQYCNEVASELKSKGI 637
Query: 414 KTEQSY-KKNPKMLNQLQHCEENKIPLAVVLGDSELKRGVVKIRNITTREEDEVPRNDLV 472
+ E + ++ PK++ ++ E K+PL V+G E++ + IR+ + E +P ++
Sbjct: 638 RAEVCHGERLPKLI---RNAETKKVPLMAVVGPKEVQARTLTIRSRHSGEIGTMPVDEFF 694
Query: 473 QEIKKRIDN 481
+ I+ I N
Sbjct: 695 RRIQLAIAN 703
>03_04_0016 +
16461542-16461566,16462701-16462732,16463015-16463100,
16463189-16463305,16463399-16463474,16463695-16463818,
16464482-16464595,16464700-16464947
Length = 273
Score = 40.3 bits (90), Expect = 0.003
Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 42 EEIDKHLSHYSYICGYVPSKPDVDVAKALKSLDFSNYKYIKRWWNHM 88
+++D++L SYI GY SK D+ V +L S ++Y + RW++H+
Sbjct: 34 QKLDEYLLTRSYISGYQASKDDMTVFTSLPSAPAASYVNVTRWYDHI 80
>07_03_1260 -
25260872-25261101,25261199-25261312,25261473-25261596,
25261755-25261839,25261917-25262033,25262122-25262207
Length = 251
Score = 37.5 bits (83), Expect = 0.024
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 42 EEIDKHLSHYSYICGYVPSKPDVDVAKALKSLDFSNYKYIKRWWNHM 88
+++D++L SYI GY S D+ V A + S+Y + RW+ H+
Sbjct: 15 KKLDEYLLTRSYISGYQASNDDLAVYSAFSTAPSSSYTNVARWFTHI 61
>03_02_0010 +
4903473-4903525,4904117-4904175,4904285-4904355,
4904469-4904585,4907001-4907024,4907055-4907117,
4907303-4907407,4907552-4907602,4907702-4908535
Length = 458
Score = 30.7 bits (66), Expect = 2.8
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 98 LFPDF---RQPNFLKYNSKKILESQVKEEVSKLLALKAQLVTEDAGPQKF-----TLKTP 149
LFP+ R+ + KY K++ + + + ++ + ED P F L TP
Sbjct: 58 LFPEISIKREEHLKKYPDAKVISLGIGDTTEPIPSIVTSAMAEDV-PFPFCRYALALSTP 116
Query: 150 KGTRDYNPQQ--MTIRNNVLDKI 170
+G + Y P+Q +R + DK+
Sbjct: 117 EGYQGYGPEQGHKNLRKEIADKV 139
>07_03_1580 +
27888275-27888360,27888755-27888871,27888964-27889045,
27889710-27889821,27889958-27890071,27890163-27890326
Length = 224
Score = 30.3 bits (65), Expect = 3.6
Identities = 13/43 (30%), Positives = 24/43 (55%)
Query: 44 IDKHLSHYSYICGYVPSKPDVDVAKALKSLDFSNYKYIKRWWN 86
+++HLS +Y+ G SK D+ V A+ S + + RW++
Sbjct: 17 LEQHLSGKTYVSGNAISKDDIKVFAAVPSKPGAEFPNAARWYD 59
>01_06_0763 +
31800556-31800618,31800659-31800802,31800859-31800980,
31801742-31801807,31801891-31801998,31802226-31802292,
31802716-31802800,31803169-31803329,31803490-31803591,
31803807-31804029,31804155-31804300
Length = 428
Score = 29.5 bits (63), Expect = 6.4
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 374 LAAGDITVRTSDIDVYVASAQKNFLEERMKICAEL 408
+A G + RTSD+ VY Q+ FL+ R+ C L
Sbjct: 48 VANGSVRKRTSDLAVYEQFEQQVFLDRRLVSCVVL 82
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.136 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,743,919
Number of Sequences: 37544
Number of extensions: 507714
Number of successful extensions: 1265
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1246
Number of HSP's gapped (non-prelim): 16
length of query: 491
length of database: 14,793,348
effective HSP length: 85
effective length of query: 406
effective length of database: 11,602,108
effective search space: 4710455848
effective search space used: 4710455848
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)
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