Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000991-TA|BGIBMGA000991-PA|IPR004154|Anticodon-binding,
IPR009068|S15/NS1, RNA-binding, IPR010987|Glutathione S-transferase,
C-terminal-like, IPR000738|WHEP-TRS
(491 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_13244| Best HMM Match : HGTP_anticodon (HMM E-Value=1e-21) 303 1e-82
SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.) 53 5e-07
SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 4e-04
SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.13
SB_25172| Best HMM Match : HGTP_anticodon (HMM E-Value=6e-29) 31 2.1
SB_52694| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.8
SB_37259| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.7
SB_42511| Best HMM Match : Ala_racemase_N (HMM E-Value=2.7) 30 3.7
SB_484| Best HMM Match : bZIP_1 (HMM E-Value=1.4) 30 3.7
SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036) 30 4.9
SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 4.9
SB_20181| Best HMM Match : RhoGEF (HMM E-Value=0.038) 29 6.4
SB_7266| Best HMM Match : UPAR_LY6 (HMM E-Value=0.015) 29 6.4
>SB_13244| Best HMM Match : HGTP_anticodon (HMM E-Value=1e-21)
Length = 518
Score = 303 bits (745), Expect = 1e-82
Identities = 159/320 (49%), Positives = 204/320 (63%), Gaps = 29/320 (9%)
Query: 191 DFDIAGIYDPMVPDAECLKVVTEILEALDIGQYILKVNHRRLLDGMFEACGVPADKFRTT 250
D DIAG YD M+PDAEC+K+V EIL L++G + +KVNHRRLLDGMF CGVP KFRT
Sbjct: 198 DIDIAGQYDAMIPDAECVKIVAEILADLELGDFKIKVNHRRLLDGMFAVCGVPEGKFRTI 257
Query: 251 CSTVDKLDKSPWEEVRTEMINEKGVSPDAADRIGEYGRLNGSTXXXXXXXXXXXXXXXXA 310
CS VDKLDK+ WEEVR EM++EKG+ AADRIGEY +L+G
Sbjct: 258 CSAVDKLDKATWEEVRKEMVDEKGLEGSAADRIGEYVKLSGGMNLVERLAQDGELMKNKN 317
Query: 311 ALEGVEAIKTLLQYCELFGIKDKILFDLSLARGLDYYTGVIY--------------EAVL 356
A E +E ++ LLQYCELF + DK+LFDLSLARGLDYYTGVIY E V
Sbjct: 318 AKEALEDMELLLQYCELFNVTDKVLFDLSLARGLDYYTGVIYEAILTGKLPDLGKAEKVN 377
Query: 357 TRVS-----IGV---------ERIFSVLEAK-LAAGDITVRTSDIDVYVASAQKNFLEER 401
T + +GV + + + + K A D +RT+ V VAS QKN L+ R
Sbjct: 378 TSIGFPGEPVGVGSVAGGGRYDNLVGMFDPKGRKASDKKMRTNKTQVLVASGQKNMLQHR 437
Query: 402 MKICAELWDAGIKTEQSYKKNPKMLNQLQHCEENKIPLAVVLGDSELKRGVVKIRNITTR 461
+K+ +ELW+AG+K E YKKNPKMLNQ Q CEE +PL +V+G+ EL+ G+V +R++ +R
Sbjct: 438 LKLASELWEAGVKAEVLYKKNPKMLNQFQFCEEGGVPLCLVIGEKELEEGIVTLRDMESR 497
Query: 462 EEDEVPRNDLVQEIKKRIDN 481
EE V R D+ IKKR+ +
Sbjct: 498 EEVSVKRADVCDIIKKRLQS 517
Score = 88.2 bits (209), Expect = 1e-17
Identities = 45/74 (60%), Positives = 52/74 (70%), Gaps = 3/74 (4%)
Query: 118 SQVKEEVSKLLALKAQLVTEDAGP-QKFTLKTPKGTRDYNPQQMTIRNNVLDKIITVFRR 176
SQ+KEE SKL+ LK +L D G QKF LKTPKGTRDY P+QM +R + I+ F R
Sbjct: 51 SQIKEETSKLVELKKEL--GDGGKTQKFVLKTPKGTRDYMPKQMAVRQRAFEVIVGAFER 108
Query: 177 HGAECIDTPVFELK 190
HGA IDTPVFELK
Sbjct: 109 HGAVQIDTPVFELK 122
>SB_11202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1822
Score = 53.2 bits (122), Expect = 5e-07
Identities = 41/159 (25%), Positives = 72/159 (45%), Gaps = 9/159 (5%)
Query: 202 VPDAECLKVVTEILE---ALDIGQYILKVNHRRLLDGMFEACGVPADKFRTTCSTVDKLD 258
VPDAE + V EI+ LD Y +++NH LL + + GVP ++ + L
Sbjct: 1429 VPDAEVISAVAEIIREFPCLDRRSYYIRINHAGLLRAVLSSYGVPEERHPELFAV---LQ 1485
Query: 259 KSPWEEVRTEMINE--KGVSPDAADRIGEYGRLNGSTXXXXXXXXXXXXXXXXAALEGVE 316
+ E +R E IN +G+ + YG L+ AA + ++
Sbjct: 1486 EPQSERLRNEQINRLLEGLQITDHNISALYGFLSFE-GPVQKVREHIISTSSAAAHQTLQ 1544
Query: 317 AIKTLLQYCELFGIKDKILFDLSLARGLDYYTGVIYEAV 355
++ + + E FG+K I+ SL + +++GVI++ V
Sbjct: 1545 ELQAVANHMETFGVKLPIVVHTSLVYCIQHFSGVIFQVV 1583
Score = 40.7 bits (91), Expect = 0.003
Identities = 37/126 (29%), Positives = 63/126 (50%), Gaps = 13/126 (10%)
Query: 360 SIGVERIFSVLEAKLAAGDITVRTSDIDVYVASAQKNFLEERMKICAELWDAGIKTEQSY 419
SI VE+I + +++A D V S DV + + ++ERM++ ELW+AGI Y
Sbjct: 1627 SIAVEKIVT----QVSADDEMVLPSACDVLIWG---HVMQERMRVVRELWNAGIAATLLY 1679
Query: 420 -KKNPKMLNQLQ-HCEENKIPLAVVLGDSELKRGVVKIRNITTRE--EDEVPRNDLVQEI 475
+ L +Q +C + IP V L E GV K+ +I + + V ++LV +
Sbjct: 1680 DSRGLHALEDVQEYCRDTGIPHLVFL--KEQDPGVAKVVSIEKDKLTKTSVSTSELVDHL 1737
Query: 476 KKRIDN 481
+ +I +
Sbjct: 1738 QTKISS 1743
>SB_59042| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 225
Score = 43.6 bits (98), Expect = 4e-04
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 44 IDKHLSHYSYICGYVPSKPDVDVAKALKSLDFSNYKYIKRWWNHMRSFSD 93
++ L+ SYI GYVPS+ D V +ALKS ++ + RW+NH+ S+ +
Sbjct: 15 LNTFLTERSYIEGYVPSQADAVVFEALKSAPPASLPHALRWYNHIVSYGE 64
>SB_52162| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 35.1 bits (77), Expect = 0.13
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 57 YVPSKPDVDVAKALKSLDFSNYKYIKRWWNHMRSFSD 93
YVPS+ D V +ALKS ++ + RW+NH+ S+ +
Sbjct: 2 YVPSQADAVVFEALKSAPPASLPHALRWYNHIVSYGE 38
>SB_25172| Best HMM Match : HGTP_anticodon (HMM E-Value=6e-29)
Length = 314
Score = 31.1 bits (67), Expect = 2.1
Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 2/94 (2%)
Query: 363 VERIFSVLEAKLAAGDITVRTSDIDVYVASAQKNFLEERMKICAELWDAGIKTEQSYKKN 422
+ER ++L + AG+ + + S + + K+ + L + I+ Q +N
Sbjct: 191 MERFIAIL-LEHTAGNFPIWLMPEQAIILSLSEKYENYAQKVFSLLENHEIRA-QIDNRN 248
Query: 423 PKMLNQLQHCEENKIPLAVVLGDSELKRGVVKIR 456
+ +++ E K P +++G+ E K G + +R
Sbjct: 249 ETIGKKIREAETQKYPFMLIIGEDEEKNGTISVR 282
>SB_52694| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1450
Score = 30.7 bits (66), Expect = 2.8
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Query: 432 CEENKIPLAVVLGDSELKRGVVKIRNITTREEDEVPRNDLVQEIKK 477
CE KIPL + D L++ IR T DE+PR LVQ +K+
Sbjct: 164 CEGRKIPLDDIRKDL-LEKHSRFIRQNTDEHYDEMPRLQLVQRLKE 208
>SB_37259| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1690
Score = 30.3 bits (65), Expect = 3.7
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 354 AVLTRVSIGVERIFSVLEAKLAAGDITVRTSDIDVYVASAQKNF---LEERM-KICAELW 409
A+L VS VE++ + L DI + + D+ + S Q N L++RM +I EL
Sbjct: 358 AILFLVSPLVEKLEQLKGRGLFLSDIPIHDATRDLILVSEQANAQDGLKKRMEQIQKELQ 417
Query: 410 DAGIKTEQSYKKNPKMLNQL-QHCEENKI 437
A + E+ KK +L+ + H NK+
Sbjct: 418 QASSELEEEKKKTENLLSSIFPHDVANKL 446
>SB_42511| Best HMM Match : Ala_racemase_N (HMM E-Value=2.7)
Length = 228
Score = 30.3 bits (65), Expect = 3.7
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 55 CGYVPSKPDVDVAKALKSLDFSNYKYIKRW--WN-HMRSFSDTEVSL 98
CG P + V +AK + +L N+K I+ + WN H+R F D + ++
Sbjct: 56 CGVEPGEQVVQLAKHILALPNLNFKGIQTYQGWNQHVRKFGDRKTAV 102
>SB_484| Best HMM Match : bZIP_1 (HMM E-Value=1.4)
Length = 263
Score = 30.3 bits (65), Expect = 3.7
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
Query: 45 DKHLSHYSYICGYVPSKPDVDVAKALKSLDFSN-YK-YIKRWWNHMRSFSDTEVSLFPDF 102
+K L I ++ KPDV AK + +DF Y+ Y N + ++ L PD+
Sbjct: 85 EKKLKGLLEIHSHLLLKPDVGNAKHIGYIDFDTAYELYCGHQENAVEKKDFRDILLHPDY 144
Query: 103 ----RQPNFLKYNSKKILESQVKEEVSKLLALKAQLVTED 138
NFL+YN + I+ + +V +A +VT +
Sbjct: 145 GLHVHIVNFLEYNRRYIILKTSELDVPNFVAELLTMVTSE 184
>SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036)
Length = 1136
Score = 29.9 bits (64), Expect = 4.9
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 6/100 (6%)
Query: 45 DKHLSHYSYICGYVPSKPDVDVAKALKSLDFSN-YK-YIKRWWNHMRSFSDTEVSLFPDF 102
+K L I ++ KPDV AK + +DF Y+ Y N + ++ L PD+
Sbjct: 85 EKKLKGLLEIHSHLLLKPDVGNAKHIGYIDFDTAYELYCGHQENAVEKKDFRDILLHPDY 144
Query: 103 ----RQPNFLKYNSKKILESQVKEEVSKLLALKAQLVTED 138
NFL+YN + I+ + +V +A +VT +
Sbjct: 145 GLHVHIVNFLEYNRRCIILKTSELDVPNFVAELLTMVTSE 184
>SB_51779| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3610
Score = 29.9 bits (64), Expect = 4.9
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 4/103 (3%)
Query: 363 VERIFSVLEAKLAAGDITVRTSDIDVYVASAQK---NFLEERMKICAELWDAGIKTEQSY 419
+ R S + K G VR ID+ S K F+E K E GI T ++
Sbjct: 1531 IHRYVSSVYQKAPVGHSLVRVKAIDLDTGSNAKVEYTFVEPSDKFAIEK-TTGIVTVKTD 1589
Query: 420 KKNPKMLNQLQHCEENKIPLAVVLGDSELKRGVVKIRNITTRE 462
+ LQ N +P+ V +G+ + R + + ++TT E
Sbjct: 1590 LSSFTGFVTLQVQSSNPVPITVSVGEDDRDRQTLVVIDVTTVE 1632
>SB_20181| Best HMM Match : RhoGEF (HMM E-Value=0.038)
Length = 274
Score = 29.5 bits (63), Expect = 6.4
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 234 DGMFEACGVPADKFRTTCSTVDKLDKSPWEEVRTEMINEKGVSPDAADR 282
+G+ A + A+ ST +K W E E++ + GVSP +DR
Sbjct: 174 EGILNAFEIKANGDVMKLSTNHAPEKVAWMETLPELLGQSGVSPTLSDR 222
>SB_7266| Best HMM Match : UPAR_LY6 (HMM E-Value=0.015)
Length = 513
Score = 29.5 bits (63), Expect = 6.4
Identities = 13/50 (26%), Positives = 29/50 (58%)
Query: 310 AALEGVEAIKTLLQYCELFGIKDKILFDLSLARGLDYYTGVIYEAVLTRV 359
AA + ++ ++ + + E FG+K I+ SL + +++GVI++ R+
Sbjct: 255 AARQTLQELQAVANHMEKFGVKLPIVVHTSLVYCIQHFSGVIFQFSYYRI 304
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.136 0.389
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,126,110
Number of Sequences: 59808
Number of extensions: 622852
Number of successful extensions: 1574
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1558
Number of HSP's gapped (non-prelim): 18
length of query: 491
length of database: 16,821,457
effective HSP length: 85
effective length of query: 406
effective length of database: 11,737,777
effective search space: 4765537462
effective search space used: 4765537462
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 62 (29.1 bits)
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