Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000990-TA|BGIBMGA000990-PA|IPR012337|Polynucleotidyl
transferase, Ribonuclease H fold
(290 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_25337| Best HMM Match : No HMM Matches (HMM E-Value=.) 80 2e-15
SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24) 32 0.63
SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053) 31 1.5
SB_5807| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_28229| Best HMM Match : PWP2 (HMM E-Value=0.68) 30 2.6
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.6
SB_32913| Best HMM Match : TSP_1 (HMM E-Value=1.4e-16) 29 3.4
SB_35445| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_51392| Best HMM Match : Peptidase_M1 (HMM E-Value=0) 28 7.8
>SB_25337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1879
Score = 80.2 bits (189), Expect = 2e-15
Identities = 39/94 (41%), Positives = 58/94 (61%), Gaps = 1/94 (1%)
Query: 135 LSTDHQIYIFDIQVMQYHAFESGLKKILEGDSPKKIAHDCRKLSDCLYHKHNVKLKSVFD 194
+ T +Y+FD+ + F+ GL++ILE + K+ HDCR SD L+H ++V+L +VFD
Sbjct: 166 IGTREFVYLFDVLKLGASCFDEGLQEILENGNILKVFHDCRHPSDALFHLYSVRLINVFD 225
Query: 195 TQVGDLIITKNKKV-TLPNKVRSLGECLTNYLGL 227
TQV D+II K ++ LP V L CL YL +
Sbjct: 226 TQVADIIIYKRERQGELPQLVNGLVACLYEYLNM 259
>SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24)
Length = 1064
Score = 31.9 bits (69), Expect = 0.63
Identities = 18/99 (18%), Positives = 52/99 (52%), Gaps = 6/99 (6%)
Query: 4 LYTKGELLQVHTKNYDVFEGRFYSMAQDKTKISLYDVKEIPHGDANDGVLHYYDSEIREV 63
L + L ++H N + +G F ++ K++++ + P +N G+L Y+ I +
Sbjct: 949 LNRRSRLFKLHYINLNRRDGNFTDQDINEAKLAVFAAVDSPVSPSNRGML-YFTQGITDA 1007
Query: 64 VKLQESTEKKVLKISQTKYEEILKISKKYIFINQVDKSF 102
++++ ++ +S+ ++I+ +++KY+ ++ S+
Sbjct: 1008 --MRQAQRDRLFAVSR---DDIVNVTRKYLSSSEATNSY 1041
>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
Length = 1152
Score = 30.7 bits (66), Expect = 1.5
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 45 HGDANDGVLHYYDSEIREVVKLQESTEKKVLKISQTKYEEILKISKKYIFINQVDKSFHE 104
H D D L S+ R++++ S + ++ +Q KY +I K KY I++ + +
Sbjct: 42 HRDIIDKALQ--QSKYRDIIEKARSKYRDIIDKAQNKYRDIDKAQSKYRDIDKAQSKYRD 99
Query: 105 AVD 107
++
Sbjct: 100 IIE 102
Score = 30.7 bits (66), Expect = 1.5
Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 31 DKTKISLYDVKEIPHGDANDGVLHYYDSEIREVVKLQESTEKKVLKISQTKYEEILKISK 90
DK + D+ + + D ++ S R+++ +S + ++ +Q+KY +I K
Sbjct: 219 DKAQSKYRDIIDKAQSNYRD-IIDKAQSNYRDIIDKAQSKYRDIIDKAQSKYRDIDKAQS 277
Query: 91 KYIFINQVDKSFHEAVD--DLNQQDFI 115
KY I ++S + +D N +D I
Sbjct: 278 KYRDIIDKEQSKYRDIDKAQSNYRDII 304
>SB_5807| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 250
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 200 LIITKNKKVTLPNKVRSLGECLTNYLGLQQNTIDEKLKGLLHLAKFSRLNPEAN-LEASG 258
L ++ N + ++ L + LT ++G + N +DE K LAK +LN N LE+ G
Sbjct: 67 LDVSSNGLAYISARISELDKLLT-FIG-RNNNLDELPKEFGSLAKLEKLNLSGNRLESFG 124
Query: 259 YTVLKSVTESIVSLSATKLD 278
++ + ++ L K++
Sbjct: 125 PSIFRLTQLKVLLLGGNKIN 144
>SB_28229| Best HMM Match : PWP2 (HMM E-Value=0.68)
Length = 317
Score = 29.9 bits (64), Expect = 2.6
Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 4/102 (3%)
Query: 164 GDSPKKIAHDCRKLSDCLYHKHNVK-LKSVFDTQVGDLIITKNKKVTLPNKVRSLGECLT 222
GD K + D K +VK LK + D Q L+ T K P K R L
Sbjct: 147 GDDVKTWSVDQLKSVGKFLKDFDVKDLKQLVDQQFKTLLSTLGKMDWSPEKARELARKTI 206
Query: 223 NYLGLQQNTIDEKLKGLLHLAKFSRLNPEANLEASGYTVLKS 264
+LG N L+ L +A S L P + ++ G TVL++
Sbjct: 207 QFLGTPGNWTASNLRDLGKIA--SGLLP-SEIKQIGNTVLRA 245
>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1711
Score = 29.9 bits (64), Expect = 2.6
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 2 DNLYTKGELLQVHTKNYDVFEGRFYSMAQD-KTKI-SLYDVKEIPHGDANDGVLHYYDSE 59
++L T+ L +N + R+ + A++ + K+ S + K+ P + VL D
Sbjct: 554 ESLETQNTLADEKIRNLESEVKRWRTTAEELEAKLRSAEEEKKTPRKEKTKVVLTTTDEN 613
Query: 60 IREVVKLQESTEKKVLK-ISQTKYEEILKISKKYIFINQVDKSFHEAVDDLNQQ 112
+RE+VKL++ +E + S K E +K+ F Q + E V DL ++
Sbjct: 614 VRELVKLRQESENYARETTSLRKLLEQESAAKR--FEAQCRREVEEKVSDLEKE 665
>SB_32913| Best HMM Match : TSP_1 (HMM E-Value=1.4e-16)
Length = 491
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 44 PHGDANDGVLHYYDSEIREVVKLQESTEKKVLKISQTKYEEIL 86
P G DG + DS I++V +Q EK L I Q +++L
Sbjct: 127 PRGKVGDGTRCFKDSSIKDVC-IQGKCEKSYLNIQQVGCDDVL 168
>SB_35445| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 250
Score = 29.5 bits (63), Expect = 3.4
Identities = 16/70 (22%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 53 LHYYDSEIREVVKLQESTEKKVLKISQTKYEEILKISKK----YIFINQVDKSFHEAVDD 108
+ + +SE VK+ ES + +KIS+++ E +KIS+ ++ I++ + + +
Sbjct: 13 IDWVESEPETFVKISESEPETFVKISESEPETFVKISESEPETFVKISESEPETFVKISE 72
Query: 109 LNQQDFIAVS 118
+ F+ +S
Sbjct: 73 SEPETFVKIS 82
Score = 28.7 bits (61), Expect = 5.9
Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 57 DSEIREVVKLQESTEKKVLKISQTKYEEILKISKK----YIFINQVDKSFHEAVDDLNQQ 112
+SE VK+ ES + +KIS+++ E +KIS+ ++ I++ + + + +
Sbjct: 50 ESEPETFVKISESEPETFVKISESEPETFVKISESEPETFVKISESEPETFVKISESEPE 109
Query: 113 DFIAVS 118
F+ +S
Sbjct: 110 TFVKIS 115
>SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1531
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 7/65 (10%)
Query: 62 EVVKLQESTEKKVLKISQTKYEEILKISKKYIF-----INQVDKSFHEAVDDLNQQDFIA 116
E+ KLQ + + ++ E++L SK+ + + ++DK +E+VD+L Q+D
Sbjct: 932 ELTKLQNDFQDTITQLKTL--EDLLDTSKRVVEEKEQKVTELDKLLNESVDELQQKDKSL 989
Query: 117 VSGDG 121
DG
Sbjct: 990 KEKDG 994
>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2248
Score = 29.1 bits (62), Expect = 4.5
Identities = 19/66 (28%), Positives = 29/66 (43%)
Query: 62 EVVKLQESTEKKVLKISQTKYEEILKISKKYIFINQVDKSFHEAVDDLNQQDFIAVSGDG 121
E+ KLQES +V + + L+ + K + SFH + + DF+ V DG
Sbjct: 2020 EIGKLQESFRSQVADVELRAHNNWLQWNSKLHCLCSNGPSFHIRLVVFDFVDFVCVLADG 2079
Query: 122 ANMGRK 127
A K
Sbjct: 2080 AETPAK 2085
>SB_51392| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
Length = 791
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 243 AKFSRLNPEANLEASGYTVLKSVTESIVSLSATKLDVSCVYDDGSNIV 290
A+F ++N ++LE GY + V E + + S + D VY GS+++
Sbjct: 352 AQFVQINVCSSLELDGYESSRPVVEPVNTPSLSMFD-DIVYKKGSSVI 398
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.135 0.378
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,233,418
Number of Sequences: 59808
Number of extensions: 365465
Number of successful extensions: 983
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 966
Number of HSP's gapped (non-prelim): 20
length of query: 290
length of database: 16,821,457
effective HSP length: 81
effective length of query: 209
effective length of database: 11,977,009
effective search space: 2503194881
effective search space used: 2503194881
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)
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