GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000990-TA|BGIBMGA000990-PA|IPR012337|Polynucleotidyl
transferase, Ribonuclease H fold
         (290 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   3.5  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    22   6.1  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    21   8.1  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 212 NKVRSLGECLTNYLGLQQNTIDEKLKGLLHLAKFS 246
           N++RSL + L    GL++  +   L G L L   S
Sbjct: 330 NRLRSLPDNLFRETGLERLDVSHNLLGKLPLTSLS 364


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 3/28 (10%)

Query: 86  LKISKKYIFINQVDKSFHEAVDDLNQQD 113
           L ++ KY    ++DK  HE++DD +  D
Sbjct: 270 LSMNHKY---EKIDKEEHESMDDDDDDD 294


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 74  VLKISQTKYEEILKISKKYIFINQVDKSFHEAVDDL 109
           V+ I    Y  I ++SK    I+++  + HE +D +
Sbjct: 922 VVCICHVCYSTIQEVSKSGELIHKIATNDHEIIDKI 957


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.135    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,537
Number of Sequences: 317
Number of extensions: 2755
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 5
length of query: 290
length of database: 114,650
effective HSP length: 56
effective length of query: 234
effective length of database: 96,898
effective search space: 22674132
effective search space used: 22674132
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)