Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000990-TA|BGIBMGA000990-PA|IPR012337|Polynucleotidyl
transferase, Ribonuclease H fold
(290 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa... 29 0.78
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ... 29 1.0
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 28 1.8
SPAC17H9.11 |||cofilin/tropomyosin family protein|Schizosaccharo... 27 2.4
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 27 2.4
SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces p... 27 3.1
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 4.1
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 27 4.1
SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor Mc... 27 4.1
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 27 4.1
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 27 4.1
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 26 5.5
SPAC926.02 |||conserved fungal protein|Schizosaccharomyces pombe... 26 5.5
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 9.6
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 25 9.6
>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 300
Score = 29.1 bits (62), Expect = 0.78
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Query: 214 VRSLGECLTNYLGLQQNTIDEKLKGL---LHLAKFSRLNPEANLEASGYTVLKS 264
+ L L+ +L + T+D K+ L H FS +PE+NL + GY L S
Sbjct: 16 IDKLKATLSGHLPVSCITMDAKITSLQPGYHFLFFSLASPESNLNSDGYESLYS 69
>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 28.7 bits (61), Expect = 1.0
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 191 SVFDTQVGDLIITKNKKVTLPNKVRSLGECLTNYLGLQQNTIDEKLKGLLHLAKFSRLNP 250
S+ T + +K ++ + S + LT L N +++ + L K + +P
Sbjct: 75 SMSRTSASSFRYSSPQKSSIDTPITSSDQGLTPDLVGSSNALNKPTRESDSL-KHQKSHP 133
Query: 251 EANLEASGYTVLKSVTESIVSLSATKLDVSCVYDD 285
N S ++ KSV+ S+S T LDVS +D+
Sbjct: 134 MLNSLGSSLSLKKSVSRPPSSMSRTNLDVSSRWDN 168
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 180 CLYHKHNVKLKSVFDTQVGDLIITKNKKVTLPNKVRSLGECLT--NYLGLQQNTIDE 234
CL KHN L+ F+++ ++ K+ + N ++ + ++ L + QN+I+E
Sbjct: 263 CLVSKHNNALEDKFNSEAARQLLQKSLSIVASNLKQAENKTISYEEKLSIAQNSINE 319
>SPAC17H9.11 |||cofilin/tropomyosin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 141
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/46 (41%), Positives = 25/46 (54%), Gaps = 6/46 (13%)
Query: 69 STEKKVLKISQTKYEEI------LKISKKYIFINQVDKSFHEAVDD 108
S+E ++ IS T +EI LK S Y FI +VDK+ E V D
Sbjct: 2 SSEARMFTISDTTMKEIDRFRLRLKKSVMYAFILKVDKATKEIVPD 47
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 25 FYSMAQDKTKISLYDVKEIPHGDANDGVLHYYDSEIREVVKLQESTEKKVLKIS 78
F S+++ K KISLY++K D L + +R + ++ ST+ K L ++
Sbjct: 167 FASVSERKYKISLYNIKSFDARPFQDIPLTFLPPHVR-IANVEFSTDGKYLLLT 219
>SPAC7D4.10 |vma13||V-type ATPase subunit H|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 450
Score = 27.1 bits (57), Expect = 3.1
Identities = 21/62 (33%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 190 KSVFDTQVGDLIITKNKKVTLPNKVRSLGECLTNYLGLQQNTIDEKLKGLLHLAKFSRLN 249
K+ DT L+ +K V L K + E +TNYL +T+DE K HL+ F
Sbjct: 279 KAPKDTISTMLLEHVDKAVQLLQKRKWADEDITNYLDFITSTLDESSK---HLSTFDMYK 335
Query: 250 PE 251
E
Sbjct: 336 SE 337
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 26.6 bits (56), Expect = 4.1
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 208 VTLPNKVRSLGECLTNYLGLQQ--NTIDEKLKGLLHLAKFSRLNPEANLEASGYTVLKSV 265
++ PN + L +C NY+ +Q+ N DE K L+ L S + P+ G +L +
Sbjct: 717 LSFPNIEQLLDDCYANYV-MQRFLNVADESQKFLI-LRSISHVIPKIQNTRHGRHILAKL 774
Query: 266 TESIVS 271
T S S
Sbjct: 775 TSSTSS 780
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 26.6 bits (56), Expect = 4.1
Identities = 23/96 (23%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 29 AQDKTKISLYDVKE-IPHGDANDGVLHYYDSEIREVVKLQESTEKKVL--KISQTKYEEI 85
AQ K L+D E +P G+ + +I ++ + S E V K++ K E+
Sbjct: 351 AQQINKALLFDQNEWLPPGEKQFDFVFDESQQIDFLLDTKLSAENPVDTDKMTDVKVEKS 410
Query: 86 LKISKKYIFINQVDKSFHEAVDDLNQQDFIAVSGDG 121
L+ S+K + + Q +A+++ +A +G G
Sbjct: 411 LESSRKSLPVYQYKDDLLKAINEYQVLLIVAETGSG 446
>SPAPB1E7.02c |mcl1|slr3|DNA polymerase alpha accessory factor
Mcl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 26.6 bits (56), Expect = 4.1
Identities = 8/21 (38%), Positives = 17/21 (80%)
Query: 50 DGVLHYYDSEIREVVKLQEST 70
+G+L++YD++ RE++K +T
Sbjct: 158 NGILYFYDTQTRELIKFLTNT 178
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 26.6 bits (56), Expect = 4.1
Identities = 17/97 (17%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 14 HTKNYDVFEGRFYSMAQDKTK-ISLYDVKEIPHGDANDGVLHYYDSEIREVVKLQESTEK 72
+ +NYD+F+ +SM+ + K +L ++ E+ + +Y D + ++ + +
Sbjct: 1258 NARNYDLFDDSIFSMSFAELKYTALSNIVEMEKLGFANRRNNYQDMVNSIALDIRNKSRR 1317
Query: 73 KVLKISQ--TKYEEILKISKKYIFINQVDKSFHEAVD 107
++ + + ++ +L + +K F++ KS++E ++
Sbjct: 1318 RMQRQRELDAGHQSLLNLREKRAFLDSQLKSYNEYIE 1354
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 26.6 bits (56), Expect = 4.1
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Query: 62 EVVKLQESTEKKVLKISQTKYEEILKISKKYIFINQVDKSFHEAVDDLNQQDFIAVSG 119
E + L ++T ++L + KY + +I+ I++ KSF+E V D Q F SG
Sbjct: 150 EAISLMQAT-LQLLNFFK-KYRSVERIASLSRSISEFQKSFYEQVFDTFQSQFKKESG 205
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 26.2 bits (55), Expect = 5.5
Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
Query: 198 GDLIITKNKKVTLPNKVRSLG-ECLTNYLGLQQ-NTIDEKLKGLLHLAKFSRLNPEANLE 255
G L NKKVTLP+KV SL E L N + I K LA + P + L+
Sbjct: 840 GFLSAFDNKKVTLPDKVVSLMIELLENLTAVNDPKLIPYISKSYAFLAYLYQSKPTSVLD 899
Query: 256 ASGYTVLKSVTES 268
T++K ES
Sbjct: 900 ----TIIKRAAES 908
>SPAC926.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 443
Score = 26.2 bits (55), Expect = 5.5
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 48 ANDGVLHYYDSEIREVVKLQESTEKKVLKISQTKYEEILKISKKYIFINQVDKSFHEAVD 107
A + H D + RE ++ + + + SQ KYEEI I + ++ + DK V
Sbjct: 149 ALQSISHSIDLQERERIEWENTIQTS----SQQKYEEIPDIQARRLYFIEADKEASTLVT 204
Query: 108 DL 109
++
Sbjct: 205 EI 206
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
Query: 136 STDHQIYIFDIQVMQYHAFESGLKKIL------EGDSPKK 169
STD + F+ ++ +Y A++SGL + +G++PK+
Sbjct: 906 STDQRYNFFNQKIQEYSAYDSGLDNWIQFCLEKDGEAPKE 945
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 25.4 bits (53), Expect = 9.6
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 214 VRSLGECLTNYLGLQQNTIDEKLKGLLHLAKFSRLNPEANLEASGYTVLKSVTESIV 270
VRSL EC+T Y Q +T++++ L LAK P LE VLK VT ++V
Sbjct: 596 VRSLEECITLYNNGQISTLNDEEVVQLTLAK---KIPLYALE----RVLKDVTRAVV 645
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.135 0.378
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,331,718
Number of Sequences: 5004
Number of extensions: 55779
Number of successful extensions: 173
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 166
Number of HSP's gapped (non-prelim): 17
length of query: 290
length of database: 2,362,478
effective HSP length: 72
effective length of query: 218
effective length of database: 2,002,190
effective search space: 436477420
effective search space used: 436477420
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)
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