Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000990-TA|BGIBMGA000990-PA|IPR012337|Polynucleotidyl
transferase, Ribonuclease H fold
(290 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0387 - 21695277-21695351,21696186-21696228,21696325-216964... 42 8e-04
03_02_0900 - 12262149-12262565,12262924-12263061,12263387-122634... 37 0.022
11_08_0077 - 28180918-28183269,28183553-28184608 30 2.5
08_01_0038 - 282431-283954 30 2.5
07_01_1180 - 11188789-11188797,11189032-11189068,11190328-111903... 29 3.3
05_01_0166 + 1145829-1145971,1146211-1146235,1147330-1147425,114... 29 3.3
07_03_1702 + 28828635-28828905,28831222-28831448,28831601-288322... 29 5.8
02_03_0205 - 16411707-16412759,16413077-16413256,16413960-164144... 29 5.8
01_06_1609 + 38621264-38621386,38621521-38621578,38621778-386220... 28 7.6
>01_05_0387 -
21695277-21695351,21696186-21696228,21696325-21696454,
21696812-21697028,21697202-21697248,21698132-21698228,
21698637-21698687,21698788-21698919,21699345-21699499,
21700461-21700534,21700566-21700730,21701368-21701420
Length = 412
Score = 41.5 bits (93), Expect = 8e-04
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Query: 111 QQDFIAVSGDGANMGRKCKMPFLVLSTDHQIYIFDIQVMQYHAFESGLKKILEGDSPKKI 170
Q+ I +G ++ R + + ++ +Y+ D E+ K LE + K+
Sbjct: 126 QKLVIGFDCEGVDLCRHGALCIMQIAFPDAVYLVDAIEGGKELIEA-CKPALESEYVTKV 184
Query: 171 AHDCRKLSDCLYHKHNVKLKSVFDTQV 197
HDC++ S+ LY + +KL +V DTQ+
Sbjct: 185 IHDCKRDSEALYFQFGIKLHNVMDTQI 211
>03_02_0900 -
12262149-12262565,12262924-12263061,12263387-12263446,
12263557-12263619,12264181-12264243,12264420-12264482,
12265076-12265153,12265673-12266080
Length = 429
Score = 36.7 bits (81), Expect = 0.022
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 182 YHKHN-VKLKSVFDTQVGDLIITKNKKVTLPNKVRSLGECLTNYLGLQQNTIDEKLKGLL 240
YH N V+L+ + + K+V L NKVRS+ E + + L Q+ ++ E+L GL
Sbjct: 178 YHAQNEVRLEEKLNNLQNGYDVLIKKEVALDNKVRSI-EVINDALTHQETSLKERLSGLE 236
Query: 241 HLAKFSRLNPEANLEASGYTVLKS 264
K + + EAS TV +S
Sbjct: 237 ETNKVLLVQVKVLEEASNNTVEES 260
>11_08_0077 - 28180918-28183269,28183553-28184608
Length = 1135
Score = 29.9 bits (64), Expect = 2.5
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 209 TLPNKVRSLGECLTNYLGLQQNTIDEKLKGLLHLAKFSRLNPEAN 253
T+ + +RS + ++ L +T DE+ KG L KF RL+ E N
Sbjct: 501 TMHDVIRSFAQDISRDEALVVSTSDERGKGALRSQKFLRLSVETN 545
>08_01_0038 - 282431-283954
Length = 507
Score = 29.9 bits (64), Expect = 2.5
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 11/88 (12%)
Query: 6 TKGELLQVHTKNYDVFEGRFYSMAQDKTKISLYDVKEIPHGDANDGVLHYYDSEIREVVK 65
T +L+ H + VF R Y+ D DV P+GD Y +I+++V
Sbjct: 90 TAQAILRTHDR---VFASRPYNTIADILLYGATDVAFSPYGD--------YWRQIKKIVT 138
Query: 66 LQESTEKKVLKISQTKYEEILKISKKYI 93
+ T KKV QT+ +E+ + K +
Sbjct: 139 MNLLTIKKVHSYGQTRQQEVRLVMAKIV 166
>07_01_1180 -
11188789-11188797,11189032-11189068,11190328-11190392,
11190464-11190562,11190707-11190878,11190973-11191325,
11191451-11191561,11191637-11191708,11192203-11192420,
11192546-11192594,11192697-11192750,11192876-11192958,
11193088-11193304,11193387-11193510,11194042-11194105,
11194413-11194500,11194623-11194724,11194842-11194937
Length = 670
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 208 VTLPNKVRS-LGECLTNYLGLQQNTIDEKLKGLL 240
V LP +++ + E L ++LG +N ID+++K LL
Sbjct: 178 VDLPQEIKKDINELLLHHLGPDENCIDDRVKNLL 211
>05_01_0166 +
1145829-1145971,1146211-1146235,1147330-1147425,
1147544-1147645,1147767-1147889,1147996-1148622,
1148710-1148883,1148965-1149181,1149312-1149394,
1149478-1149573,1149676-1149724,1149850-1150088,
1150547-1150618,1150694-1150804,1150930-1151282,
1151377-1151464,1151691-1151789,1151860-1151991,
1152119-1152222,1153179-1153215,1153334-1153367,
1153451-1153467
Length = 1006
Score = 29.5 bits (63), Expect = 3.3
Identities = 13/34 (38%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 208 VTLPNKVRS-LGECLTNYLGLQQNTIDEKLKGLL 240
V LP +++ + E L ++LG +N ID+++K LL
Sbjct: 450 VDLPQEIKKDINELLLHHLGPDENCIDDRVKNLL 483
>07_03_1702 +
28828635-28828905,28831222-28831448,28831601-28832233,
28832311-28832760
Length = 526
Score = 28.7 bits (61), Expect = 5.8
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 149 MQYHAFES-GLKKILEGDSPKKIAHDCRKLSDCLYHKHNVKLKSVFDTQVGDLIITKNKK 207
M+ HA + G K EG I HD R+ Y + VF VG+++
Sbjct: 49 MRSHAAAAAGGKATGEGRQEGDIVHDYRQAVFPFYENWRKQYGPVFTYSVGNMVFL---H 105
Query: 208 VTLPNKVRSLGECLTNYLG 226
V+ P+ VR L C++ LG
Sbjct: 106 VSRPDIVRELSLCVSLDLG 124
>02_03_0205 -
16411707-16412759,16413077-16413256,16413960-16414498,
16414798-16414825
Length = 599
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 96 NQVDKSFHEAVDDLNQQDFIAVS 118
+ + K HEA+DDL DF+A S
Sbjct: 407 SDLSKMVHEAIDDLEMPDFVAKS 429
>01_06_1609 +
38621264-38621386,38621521-38621578,38621778-38622013,
38622536-38622652,38622690-38622798,38622973-38623064,
38623191-38623265,38623333-38623421,38623576-38623625,
38623830-38623870,38623963-38624172,38624278-38624345,
38624434-38624494,38624607-38624840
Length = 520
Score = 28.3 bits (60), Expect = 7.6
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 115 IAVSGDGAN-MGRKCKMPFLVLSTDHQIYIFDIQVMQYHAFESGLKKILEG 164
+A G GA+ K K+P L L HQ++IF + H S L +L G
Sbjct: 126 LADGGTGADHCQNKGKVPLLSLEALHQLHIFIFVLAITHVIFSALTMLLGG 176
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.135 0.378
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,752,385
Number of Sequences: 37544
Number of extensions: 296630
Number of successful extensions: 735
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 730
Number of HSP's gapped (non-prelim): 10
length of query: 290
length of database: 14,793,348
effective HSP length: 81
effective length of query: 209
effective length of database: 11,752,284
effective search space: 2456227356
effective search space used: 2456227356
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)
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