GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000990-TA|BGIBMGA000990-PA|IPR012337|Polynucleotidyl
transferase, Ribonuclease H fold
         (290 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25337| Best HMM Match : No HMM Matches (HMM E-Value=.)              80   2e-15
SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24)       32   0.63 
SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)                 31   1.5  
SB_5807| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   2.6  
SB_28229| Best HMM Match : PWP2 (HMM E-Value=0.68)                     30   2.6  
SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_32913| Best HMM Match : TSP_1 (HMM E-Value=1.4e-16)                 29   3.4  
SB_35445| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.4  
SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_51392| Best HMM Match : Peptidase_M1 (HMM E-Value=0)                28   7.8  

>SB_25337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1879

 Score = 80.2 bits (189), Expect = 2e-15
 Identities = 39/94 (41%), Positives = 58/94 (61%), Gaps = 1/94 (1%)

Query: 135 LSTDHQIYIFDIQVMQYHAFESGLKKILEGDSPKKIAHDCRKLSDCLYHKHNVKLKSVFD 194
           + T   +Y+FD+  +    F+ GL++ILE  +  K+ HDCR  SD L+H ++V+L +VFD
Sbjct: 166 IGTREFVYLFDVLKLGASCFDEGLQEILENGNILKVFHDCRHPSDALFHLYSVRLINVFD 225

Query: 195 TQVGDLIITKNKKV-TLPNKVRSLGECLTNYLGL 227
           TQV D+II K ++   LP  V  L  CL  YL +
Sbjct: 226 TQVADIIIYKRERQGELPQLVNGLVACLYEYLNM 259


>SB_58392| Best HMM Match : Peptidase_M16_C (HMM E-Value=1.2e-24)
          Length = 1064

 Score = 31.9 bits (69), Expect = 0.63
 Identities = 18/99 (18%), Positives = 52/99 (52%), Gaps = 6/99 (6%)

Query: 4    LYTKGELLQVHTKNYDVFEGRFYSMAQDKTKISLYDVKEIPHGDANDGVLHYYDSEIREV 63
            L  +  L ++H  N +  +G F     ++ K++++   + P   +N G+L Y+   I + 
Sbjct: 949  LNRRSRLFKLHYINLNRRDGNFTDQDINEAKLAVFAAVDSPVSPSNRGML-YFTQGITDA 1007

Query: 64   VKLQESTEKKVLKISQTKYEEILKISKKYIFINQVDKSF 102
              ++++   ++  +S+   ++I+ +++KY+  ++   S+
Sbjct: 1008 --MRQAQRDRLFAVSR---DDIVNVTRKYLSSSEATNSY 1041


>SB_19195| Best HMM Match : LEA_4 (HMM E-Value=0.00053)
          Length = 1152

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 45  HGDANDGVLHYYDSEIREVVKLQESTEKKVLKISQTKYEEILKISKKYIFINQVDKSFHE 104
           H D  D  L    S+ R++++   S  + ++  +Q KY +I K   KY  I++    + +
Sbjct: 42  HRDIIDKALQ--QSKYRDIIEKARSKYRDIIDKAQNKYRDIDKAQSKYRDIDKAQSKYRD 99

Query: 105 AVD 107
            ++
Sbjct: 100 IIE 102



 Score = 30.7 bits (66), Expect = 1.5
 Identities = 20/87 (22%), Positives = 41/87 (47%), Gaps = 3/87 (3%)

Query: 31  DKTKISLYDVKEIPHGDANDGVLHYYDSEIREVVKLQESTEKKVLKISQTKYEEILKISK 90
           DK +    D+ +    +  D ++    S  R+++   +S  + ++  +Q+KY +I K   
Sbjct: 219 DKAQSKYRDIIDKAQSNYRD-IIDKAQSNYRDIIDKAQSKYRDIIDKAQSKYRDIDKAQS 277

Query: 91  KYIFINQVDKSFHEAVD--DLNQQDFI 115
           KY  I   ++S +  +D    N +D I
Sbjct: 278 KYRDIIDKEQSKYRDIDKAQSNYRDII 304


>SB_5807| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 3/80 (3%)

Query: 200 LIITKNKKVTLPNKVRSLGECLTNYLGLQQNTIDEKLKGLLHLAKFSRLNPEAN-LEASG 258
           L ++ N    +  ++  L + LT ++G + N +DE  K    LAK  +LN   N LE+ G
Sbjct: 67  LDVSSNGLAYISARISELDKLLT-FIG-RNNNLDELPKEFGSLAKLEKLNLSGNRLESFG 124

Query: 259 YTVLKSVTESIVSLSATKLD 278
            ++ +     ++ L   K++
Sbjct: 125 PSIFRLTQLKVLLLGGNKIN 144


>SB_28229| Best HMM Match : PWP2 (HMM E-Value=0.68)
          Length = 317

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 31/102 (30%), Positives = 43/102 (42%), Gaps = 4/102 (3%)

Query: 164 GDSPKKIAHDCRKLSDCLYHKHNVK-LKSVFDTQVGDLIITKNKKVTLPNKVRSLGECLT 222
           GD  K  + D  K         +VK LK + D Q   L+ T  K    P K R L     
Sbjct: 147 GDDVKTWSVDQLKSVGKFLKDFDVKDLKQLVDQQFKTLLSTLGKMDWSPEKARELARKTI 206

Query: 223 NYLGLQQNTIDEKLKGLLHLAKFSRLNPEANLEASGYTVLKS 264
            +LG   N     L+ L  +A  S L P + ++  G TVL++
Sbjct: 207 QFLGTPGNWTASNLRDLGKIA--SGLLP-SEIKQIGNTVLRA 245


>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1711

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 5/114 (4%)

Query: 2   DNLYTKGELLQVHTKNYDVFEGRFYSMAQD-KTKI-SLYDVKEIPHGDANDGVLHYYDSE 59
           ++L T+  L     +N +    R+ + A++ + K+ S  + K+ P  +    VL   D  
Sbjct: 554 ESLETQNTLADEKIRNLESEVKRWRTTAEELEAKLRSAEEEKKTPRKEKTKVVLTTTDEN 613

Query: 60  IREVVKLQESTEKKVLK-ISQTKYEEILKISKKYIFINQVDKSFHEAVDDLNQQ 112
           +RE+VKL++ +E    +  S  K  E    +K+  F  Q  +   E V DL ++
Sbjct: 614 VRELVKLRQESENYARETTSLRKLLEQESAAKR--FEAQCRREVEEKVSDLEKE 665


>SB_32913| Best HMM Match : TSP_1 (HMM E-Value=1.4e-16)
          Length = 491

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 44  PHGDANDGVLHYYDSEIREVVKLQESTEKKVLKISQTKYEEIL 86
           P G   DG   + DS I++V  +Q   EK  L I Q   +++L
Sbjct: 127 PRGKVGDGTRCFKDSSIKDVC-IQGKCEKSYLNIQQVGCDDVL 168


>SB_35445| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/70 (22%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 53  LHYYDSEIREVVKLQESTEKKVLKISQTKYEEILKISKK----YIFINQVDKSFHEAVDD 108
           + + +SE    VK+ ES  +  +KIS+++ E  +KIS+     ++ I++ +      + +
Sbjct: 13  IDWVESEPETFVKISESEPETFVKISESEPETFVKISESEPETFVKISESEPETFVKISE 72

Query: 109 LNQQDFIAVS 118
              + F+ +S
Sbjct: 73  SEPETFVKIS 82



 Score = 28.7 bits (61), Expect = 5.9
 Identities = 16/66 (24%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 57  DSEIREVVKLQESTEKKVLKISQTKYEEILKISKK----YIFINQVDKSFHEAVDDLNQQ 112
           +SE    VK+ ES  +  +KIS+++ E  +KIS+     ++ I++ +      + +   +
Sbjct: 50  ESEPETFVKISESEPETFVKISESEPETFVKISESEPETFVKISESEPETFVKISESEPE 109

Query: 113 DFIAVS 118
            F+ +S
Sbjct: 110 TFVKIS 115


>SB_21400| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1531

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 7/65 (10%)

Query: 62  EVVKLQESTEKKVLKISQTKYEEILKISKKYIF-----INQVDKSFHEAVDDLNQQDFIA 116
           E+ KLQ   +  + ++     E++L  SK+ +      + ++DK  +E+VD+L Q+D   
Sbjct: 932 ELTKLQNDFQDTITQLKTL--EDLLDTSKRVVEEKEQKVTELDKLLNESVDELQQKDKSL 989

Query: 117 VSGDG 121
              DG
Sbjct: 990 KEKDG 994


>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2248

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 19/66 (28%), Positives = 29/66 (43%)

Query: 62   EVVKLQESTEKKVLKISQTKYEEILKISKKYIFINQVDKSFHEAVDDLNQQDFIAVSGDG 121
            E+ KLQES   +V  +    +   L+ + K   +     SFH  +   +  DF+ V  DG
Sbjct: 2020 EIGKLQESFRSQVADVELRAHNNWLQWNSKLHCLCSNGPSFHIRLVVFDFVDFVCVLADG 2079

Query: 122  ANMGRK 127
            A    K
Sbjct: 2080 AETPAK 2085


>SB_51392| Best HMM Match : Peptidase_M1 (HMM E-Value=0)
          Length = 791

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 243 AKFSRLNPEANLEASGYTVLKSVTESIVSLSATKLDVSCVYDDGSNIV 290
           A+F ++N  ++LE  GY   + V E + + S +  D   VY  GS+++
Sbjct: 352 AQFVQINVCSSLELDGYESSRPVVEPVNTPSLSMFD-DIVYKKGSSVI 398


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.135    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,233,418
Number of Sequences: 59808
Number of extensions: 365465
Number of successful extensions: 983
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 966
Number of HSP's gapped (non-prelim): 20
length of query: 290
length of database: 16,821,457
effective HSP length: 81
effective length of query: 209
effective length of database: 11,977,009
effective search space: 2503194881
effective search space used: 2503194881
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 60 (28.3 bits)